ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1THF1_ORYSA (Q84PB7) Protein THYLAKOID FORMATION1, chloroplast pr... 204 2e-52
2THF1_ARATH (Q9SKT0) Protein THYLAKOID FORMATION1, chloroplast pr... 144 1e-34
3THF1_SOLTU (Q7XAB8) Protein THYLAKOID FORMATION1, chloroplast pr... 142 4e-34
4THF1_SYNEL (Q8DJT8) Protein thf1 82 9e-16
5THF1_SYNJB (P0C1D1) Protein thf1 79 6e-15
6THF1_SYNJA (Q2JSQ3) Protein thf1 77 4e-14
7THF1_ANASP (Q8YZ41) Protein thf1 75 8e-14
8THF1_GLOVI (Q7NKS7) Protein thf1 75 8e-14
9THF1_ANAVT (Q3M4B2) Protein thf1 74 2e-13
10THF1_SYNY3 (P73956) Protein thf1 73 4e-13
11THF1_SYNP7 (Q31MY4) Protein thf1 68 1e-11
12THF1_SYNP6 (Q5N664) Protein thf1 68 1e-11
13THF1_SYNSC (Q3AJN7) Protein thf1 57 3e-08
14THF1_SYNPX (Q7U6N6) Protein thf1 54 2e-07
15THF1_PROMT (Q46L45) Protein thf1 54 3e-07
16THF1_SYNS9 (Q3AY05) Protein thf1 54 3e-07
17THF1_PROMM (Q7V7R3) Protein thf1 50 3e-06
18AKAP2_HUMAN (Q9Y2D5) A-kinase anchor protein 2 (Protein kinase A... 30 3.0
19HXA4_HUMAN (Q00056) Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4) 29 6.8
20SN_HUMAN (Q9BZZ2) Sialoadhesin precursor (Sialic acid-binding Ig... 29 6.8
21PFTB_CAEEL (P41992) Probable protein farnesyltransferase beta su... 29 6.8
22SMAD4_PIG (Q9GKQ9) Mothers against decapentaplegic homolog 4 (SM... 29 8.9
23HMDH1_ORYSA (P48019) 3-hydroxy-3-methylglutaryl-coenzyme A reduc... 29 8.9
24FMT_MYCGE (P47605) Methionyl-tRNA formyltransferase (EC 2.1.2.9) 29 8.9

>THF1_ORYSA (Q84PB7) Protein THYLAKOID FORMATION1, chloroplast precursor|
          Length = 287

 Score =  204 bits (518), Expect = 2e-52
 Identities = 105/135 (77%), Positives = 113/135 (83%), Gaps = 1/135 (0%)
 Frame = +1

Query: 115 MAAISSLPFAALRRAADWRPSTATAAVSV-SGGVMLNXXXXXXXXXXXXCVITAGDIPPT 291
           MAAISSLPFAALRRAAD RPSTA AA    +G V+L+            CV TAGD+PPT
Sbjct: 1   MAAISSLPFAALRRAADCRPSTAAAAAGAGAGAVVLSVRPRRGSRSVVRCVATAGDVPPT 60

Query: 292 VADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMEG 471
           VA+TKMNFLKSYKRPI SIYSTVLQELLVQQHLMRYK+TYQYD VFALGFVTVYDQLMEG
Sbjct: 61  VAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQYDAVFALGFVTVYDQLMEG 120

Query: 472 YPSNEDRDAIFKSYV 516
           YPSNEDRDAIFK+Y+
Sbjct: 121 YPSNEDRDAIFKAYI 135



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>THF1_ARATH (Q9SKT0) Protein THYLAKOID FORMATION1, chloroplast precursor|
          Length = 300

 Score =  144 bits (364), Expect = 1e-34
 Identities = 80/139 (57%), Positives = 97/139 (69%), Gaps = 7/139 (5%)
 Frame = +1

Query: 121 AISSLPFAALRRA------ADWRPSTATAAVSVS-GGVMLNXXXXXXXXXXXXCVITAGD 279
           AISSL F AL ++      A  RP  +   +      + LN              +TA D
Sbjct: 5   AISSLSFPALGQSDKISNFASSRPLASAIRICTKFSRLSLNSRSTSKSLIHCMSNVTA-D 63

Query: 280 IPPTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQ 459
           +PP V++TK  FLK+YKRPIPSIY+TVLQEL+VQQHLMRYK TY+YDPVFALGFVTVYDQ
Sbjct: 64  VPP-VSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFVTVYDQ 122

Query: 460 LMEGYPSNEDRDAIFKSYV 516
           LMEGYPS++DRDAIFK+Y+
Sbjct: 123 LMEGYPSDQDRDAIFKAYI 141



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>THF1_SOLTU (Q7XAB8) Protein THYLAKOID FORMATION1, chloroplast precursor|
          Length = 293

 Score =  142 bits (359), Expect = 4e-34
 Identities = 75/144 (52%), Positives = 101/144 (70%), Gaps = 10/144 (6%)
 Frame = +1

Query: 115 MAAISSLPFAALRRAADWRPSTATAAVSVS----------GGVMLNXXXXXXXXXXXXCV 264
           MAA++S+ F+A+ ++A+ R S+ +++ S+             V +               
Sbjct: 1   MAAVTSVSFSAITQSAE-RKSSVSSSRSIDTFRFRSNFSFDSVNVRSSNSTSRFVVHCTS 59

Query: 265 ITAGDIPPTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFV 444
            +A D+P TVADTK+ FL +YKRPIP++Y+TVLQEL+VQQHL RYK +YQYDPVFALGFV
Sbjct: 60  SSAADLP-TVADTKLKFLTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFALGFV 118

Query: 445 TVYDQLMEGYPSNEDRDAIFKSYV 516
           TVYDQLMEGYPS EDR+AIFK+Y+
Sbjct: 119 TVYDQLMEGYPSEEDRNAIFKAYI 142



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>THF1_SYNEL (Q8DJT8) Protein thf1|
          Length = 222

 Score = 82.0 bits (201), Expect = 9e-16
 Identities = 39/74 (52%), Positives = 50/74 (67%)
 Frame = +1

Query: 283 PPTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQL 462
           P TV+DTK  F  ++ RPI SIY   ++ELLV+ HL+R    ++Y P+FALG VT +DQ 
Sbjct: 4   PRTVSDTKRAFYAAHTRPIHSIYRRFIEELLVEIHLLRVNVDFRYSPLFALGVVTAFDQF 63

Query: 463 MEGYPSNEDRDAIF 504
           MEGY    DRD IF
Sbjct: 64  MEGYQPEGDRDRIF 77



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>THF1_SYNJB (P0C1D1) Protein thf1|
          Length = 239

 Score = 79.3 bits (194), Expect = 6e-15
 Identities = 38/74 (51%), Positives = 50/74 (67%)
 Frame = +1

Query: 289 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 468
           T++ TK  F  +Y RPI ++Y  V++ELLV+ HL    ST+ YDP FALG VT+YD LME
Sbjct: 6   TLSATKAAFFSAYPRPINAVYRRVVEELLVELHLTTVNSTFVYDPFFALGLVTLYDGLME 65

Query: 469 GYPSNEDRDAIFKS 510
            Y   E R+AIF +
Sbjct: 66  AYHPPEQREAIFNA 79



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>THF1_SYNJA (Q2JSQ3) Protein thf1|
          Length = 239

 Score = 76.6 bits (187), Expect = 4e-14
 Identities = 37/74 (50%), Positives = 48/74 (64%)
 Frame = +1

Query: 289 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 468
           T++ TK  F  +Y RPI + Y  V++ELLV+ HL    S + YDP FALG VT+YD LME
Sbjct: 6   TLSATKAAFFSAYPRPINAAYRRVVEELLVELHLTTVNSAFVYDPFFALGLVTLYDSLME 65

Query: 469 GYPSNEDRDAIFKS 510
            Y   E R+AIF +
Sbjct: 66  AYHPPEQREAIFNA 79



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>THF1_ANASP (Q8YZ41) Protein thf1|
          Length = 233

 Score = 75.5 bits (184), Expect = 8e-14
 Identities = 32/74 (43%), Positives = 50/74 (67%)
 Frame = +1

Query: 289 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 468
           TV+DTK  F   + RPI +IY  V++EL+V+ HL+     + Y+P++ALG VT +D+ ME
Sbjct: 6   TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFME 65

Query: 469 GYPSNEDRDAIFKS 510
           GY    D+++IF +
Sbjct: 66  GYQPERDKESIFSA 79



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>THF1_GLOVI (Q7NKS7) Protein thf1|
          Length = 228

 Score = 75.5 bits (184), Expect = 8e-14
 Identities = 35/74 (47%), Positives = 49/74 (66%)
 Frame = +1

Query: 289 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 468
           TV+D+K  F  +Y RP+ SIY  V+ ELLV+ HL+     +++DP+FA G +T Y  LME
Sbjct: 6   TVSDSKRAFFAAYPRPVNSIYRRVIDELLVEVHLLITNQDFRHDPLFATGLLTAYQALME 65

Query: 469 GYPSNEDRDAIFKS 510
           GY   E RDAI ++
Sbjct: 66  GYTPVEQRDAILRA 79



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>THF1_ANAVT (Q3M4B2) Protein thf1|
          Length = 233

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 31/74 (41%), Positives = 50/74 (67%)
 Frame = +1

Query: 289 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 468
           TV+DTK  F   + RPI +IY  V++EL+V+ HL+     + Y+P++ALG VT +D+ M+
Sbjct: 6   TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFMQ 65

Query: 469 GYPSNEDRDAIFKS 510
           GY    D+++IF +
Sbjct: 66  GYQPERDKESIFSA 79



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>THF1_SYNY3 (P73956) Protein thf1|
          Length = 240

 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 34/74 (45%), Positives = 45/74 (60%)
 Frame = +1

Query: 289 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 468
           TV+D K  F   Y RPI SIY   ++ELLV+ HL+     + YDP+FALG VT ++  M+
Sbjct: 6   TVSDAKRKFFTHYSRPISSIYRRFVEELLVEMHLLSVNIDFTYDPIFALGIVTSFNSFMQ 65

Query: 469 GYPSNEDRDAIFKS 510
           GY   E   AIF +
Sbjct: 66  GYQPAEQLPAIFNA 79



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>THF1_SYNP7 (Q31MY4) Protein thf1|
          Length = 254

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 30/63 (47%), Positives = 43/63 (68%)
 Frame = +1

Query: 286 PTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLM 465
           PTV+D+K  F  +Y RPI  +Y  V++ELLV+ HL+   +++ YDP+FALG VT +D  M
Sbjct: 5   PTVSDSKRAFYAAYPRPINPLYRRVVEELLVEIHLLSVNTSFVYDPLFALGVVTAFDSFM 64

Query: 466 EGY 474
             Y
Sbjct: 65  SSY 67



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>THF1_SYNP6 (Q5N664) Protein thf1|
          Length = 254

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 30/63 (47%), Positives = 43/63 (68%)
 Frame = +1

Query: 286 PTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLM 465
           PTV+D+K  F  +Y RPI  +Y  V++ELLV+ HL+   +++ YDP+FALG VT +D  M
Sbjct: 5   PTVSDSKRAFYAAYPRPINPLYRRVVEELLVEIHLLSVNTSFVYDPLFALGVVTAFDSFM 64

Query: 466 EGY 474
             Y
Sbjct: 65  SSY 67



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>THF1_SYNSC (Q3AJN7) Protein thf1|
          Length = 215

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 24/74 (32%), Positives = 47/74 (63%)
 Frame = +1

Query: 289 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 468
           T+AD+K  F +++   I  +Y  +  ELLV+ HL+ ++S ++ + +F++G  TV+D  ++
Sbjct: 6   TIADSKRAFHQAFPHVIAPLYRRLADELLVELHLLSHQSRFEANELFSVGLCTVFDTFIK 65

Query: 469 GYPSNEDRDAIFKS 510
           GY      DA+F++
Sbjct: 66  GYRPEAQTDALFRA 79



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>THF1_SYNPX (Q7U6N6) Protein thf1|
          Length = 212

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 24/74 (32%), Positives = 46/74 (62%)
 Frame = +1

Query: 289 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 468
           T+AD+K  F +++   I  +Y  +  ELLV+ HL+ +++T+Q + +FA+G  TV+++  +
Sbjct: 6   TIADSKRAFHQAFPHVIAPLYRRIADELLVELHLLSHQATFQANSLFAVGLKTVFERFTQ 65

Query: 469 GYPSNEDRDAIFKS 510
           GY   E   A+  +
Sbjct: 66  GYRPMEHPAALLSA 79



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>THF1_PROMT (Q46L45) Protein thf1|
          Length = 199

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 23/72 (31%), Positives = 42/72 (58%)
 Frame = +1

Query: 289 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 468
           T++D+K +F K +   IP+IY  +  ELLV+ HL+ ++  ++ D +F+ G   V+ +   
Sbjct: 6   TISDSKSDFHKEFPYVIPAIYRKLADELLVELHLLSHQKNFKKDSIFSTGLKEVFSKFTS 65

Query: 469 GYPSNEDRDAIF 504
           GY  +E    +F
Sbjct: 66  GYKPSEHATKLF 77



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>THF1_SYNS9 (Q3AY05) Protein thf1|
          Length = 215

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 24/66 (36%), Positives = 41/66 (62%)
 Frame = +1

Query: 289 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 468
           T+AD+K  F +++   I  +Y  +  ELLV+ HL+ ++S+++  P+FA+G  TV+D    
Sbjct: 6   TIADSKRAFHQAFPHVIAPLYRRLADELLVELHLLSHQSSFKTTPLFAVGLCTVFDTFSA 65

Query: 469 GYPSNE 486
           GY   E
Sbjct: 66  GYRPEE 71



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>THF1_PROMM (Q7V7R3) Protein thf1|
          Length = 243

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 23/62 (37%), Positives = 35/62 (56%)
 Frame = +1

Query: 289 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 468
           T+AD+K  F   +   IPS+Y     ELLV+ HL+ ++  +  D +FA+G   V+D    
Sbjct: 6   TIADSKRAFNHDFPHVIPSLYRRTTDELLVELHLLSHQKHFHPDALFAIGLSQVFDVFTS 65

Query: 469 GY 474
           GY
Sbjct: 66  GY 67



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>AKAP2_HUMAN (Q9Y2D5) A-kinase anchor protein 2 (Protein kinase A-anchoring|
           protein 2) (PRKA2) (AKAP-2)
          Length = 1103

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -1

Query: 290 VGGISPAVMTQRTTEREPRRALALSMTPPETLTAAVAVDGLQSAARRSAANGSDDMAAMG 111
           VGG+SP V     T+ EP    A    PP    +  + D +  A R +  + S    A+G
Sbjct: 318 VGGLSPPV--HEATQPEPTERTASRQAPPHIELSNSSPDPMAEAERTNGHSPSQPRDALG 375

Query: 110 ES 105
           +S
Sbjct: 376 DS 377



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>HXA4_HUMAN (Q00056) Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4)|
          Length = 320

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 21  APVNYPFALTGGVDHP-PPYPVREPVAARGLSHGGH 125
           A   YP+   GG     PP P + P  A+G +HG H
Sbjct: 96  ADTAYPYGYRGGASPGRPPQPEQPPAQAKGPAHGLH 131



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>SN_HUMAN (Q9BZZ2) Sialoadhesin precursor (Sialic acid-binding Ig-like|
           lectin-1) (Siglec-1) (CD169 antigen)
          Length = 1709

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +3

Query: 81  VREPVAARGLSHGGHIVAS 137
           V EP+A   LSHGGHI+AS
Sbjct: 436 VSEPLATLVLSHGGHILAS 454



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>PFTB_CAEEL (P41992) Probable protein farnesyltransferase beta subunit (EC|
           2.5.1.58) (CAAX farnesyltransferase beta subunit) (RAS
           proteins prenyltransferase beta) (FTase-beta)
          Length = 335

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 111 SHGGHIVASVRCTAPSGRLEAVDGDCRGERLRWRHAQREGSAG 239
           SH G I   V   A +GRL+ +D D   E L +R     G  G
Sbjct: 195 SHSGQIYCCVGALAIAGRLDEIDRDRTAEWLAFRQCDSGGLNG 237



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>SMAD4_PIG (Q9GKQ9) Mothers against decapentaplegic homolog 4 (SMAD 4)|
           (Mothers against DPP homolog 4) (Smad4)
          Length = 552

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 3   GTRLAPAPVNYPFALTGGVDHPPPYP 80
           G+R AP P N P    G + H PP P
Sbjct: 270 GSRTAPYPPNLPHHQNGHLQHHPPMP 295



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>HMDH1_ORYSA (P48019) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (EC|
           1.1.1.34) (HMG-CoA reductase 1)
          Length = 509

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 28/69 (40%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
 Frame = +3

Query: 69  PPYPVREPVAARGLSHGG--HIVASVRCTA-PSGRLEAVDGDC-RGERLR---WRHAQRE 227
           PP P        G+  G    IVA+V   A PS RLE+  GDC R  RLR    R     
Sbjct: 77  PPEPAPMHGHGGGMMEGDDEEIVAAVASGALPSHRLESRLGDCRRAARLRREALRRVTGR 136

Query: 228 GSAGLTFGG 254
           G  GL F G
Sbjct: 137 GVEGLPFDG 145



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>FMT_MYCGE (P47605) Methionyl-tRNA formyltransferase (EC 2.1.2.9)|
          Length = 311

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 495 IPVLVAGVPFHKLVIDGDKSKSKHRIILIRTFVSHQMLLHQKFL*NCTVNAWN 337
           +P+L  G P H  +I+G K  +   I L++   +  +   Q FL N   N WN
Sbjct: 111 LPLLRGGAPLHWTIINGFKKSALSVIQLVKKMDAGPIWKQQDFLVN---NDWN 160


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,599,898
Number of Sequences: 219361
Number of extensions: 1636331
Number of successful extensions: 5690
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 5435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5688
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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