ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2h08 |
|---|---|
| Clone Library Name | barley_pub |
>THF1_ORYSA (Q84PB7) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 287 Score = 204 bits (518), Expect = 2e-52 Identities = 105/135 (77%), Positives = 113/135 (83%), Gaps = 1/135 (0%) Frame = +1 Query: 115 MAAISSLPFAALRRAADWRPSTATAAVSV-SGGVMLNXXXXXXXXXXXXCVITAGDIPPT 291 MAAISSLPFAALRRAAD RPSTA AA +G V+L+ CV TAGD+PPT Sbjct: 1 MAAISSLPFAALRRAADCRPSTAAAAAGAGAGAVVLSVRPRRGSRSVVRCVATAGDVPPT 60 Query: 292 VADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMEG 471 VA+TKMNFLKSYKRPI SIYSTVLQELLVQQHLMRYK+TYQYD VFALGFVTVYDQLMEG Sbjct: 61 VAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQYDAVFALGFVTVYDQLMEG 120 Query: 472 YPSNEDRDAIFKSYV 516 YPSNEDRDAIFK+Y+ Sbjct: 121 YPSNEDRDAIFKAYI 135
>THF1_ARATH (Q9SKT0) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 300 Score = 144 bits (364), Expect = 1e-34 Identities = 80/139 (57%), Positives = 97/139 (69%), Gaps = 7/139 (5%) Frame = +1 Query: 121 AISSLPFAALRRA------ADWRPSTATAAVSVS-GGVMLNXXXXXXXXXXXXCVITAGD 279 AISSL F AL ++ A RP + + + LN +TA D Sbjct: 5 AISSLSFPALGQSDKISNFASSRPLASAIRICTKFSRLSLNSRSTSKSLIHCMSNVTA-D 63 Query: 280 IPPTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQ 459 +PP V++TK FLK+YKRPIPSIY+TVLQEL+VQQHLMRYK TY+YDPVFALGFVTVYDQ Sbjct: 64 VPP-VSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFVTVYDQ 122 Query: 460 LMEGYPSNEDRDAIFKSYV 516 LMEGYPS++DRDAIFK+Y+ Sbjct: 123 LMEGYPSDQDRDAIFKAYI 141
>THF1_SOLTU (Q7XAB8) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 293 Score = 142 bits (359), Expect = 4e-34 Identities = 75/144 (52%), Positives = 101/144 (70%), Gaps = 10/144 (6%) Frame = +1 Query: 115 MAAISSLPFAALRRAADWRPSTATAAVSVS----------GGVMLNXXXXXXXXXXXXCV 264 MAA++S+ F+A+ ++A+ R S+ +++ S+ V + Sbjct: 1 MAAVTSVSFSAITQSAE-RKSSVSSSRSIDTFRFRSNFSFDSVNVRSSNSTSRFVVHCTS 59 Query: 265 ITAGDIPPTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFV 444 +A D+P TVADTK+ FL +YKRPIP++Y+TVLQEL+VQQHL RYK +YQYDPVFALGFV Sbjct: 60 SSAADLP-TVADTKLKFLTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFALGFV 118 Query: 445 TVYDQLMEGYPSNEDRDAIFKSYV 516 TVYDQLMEGYPS EDR+AIFK+Y+ Sbjct: 119 TVYDQLMEGYPSEEDRNAIFKAYI 142
>THF1_SYNEL (Q8DJT8) Protein thf1| Length = 222 Score = 82.0 bits (201), Expect = 9e-16 Identities = 39/74 (52%), Positives = 50/74 (67%) Frame = +1 Query: 283 PPTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQL 462 P TV+DTK F ++ RPI SIY ++ELLV+ HL+R ++Y P+FALG VT +DQ Sbjct: 4 PRTVSDTKRAFYAAHTRPIHSIYRRFIEELLVEIHLLRVNVDFRYSPLFALGVVTAFDQF 63 Query: 463 MEGYPSNEDRDAIF 504 MEGY DRD IF Sbjct: 64 MEGYQPEGDRDRIF 77
>THF1_SYNJB (P0C1D1) Protein thf1| Length = 239 Score = 79.3 bits (194), Expect = 6e-15 Identities = 38/74 (51%), Positives = 50/74 (67%) Frame = +1 Query: 289 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 468 T++ TK F +Y RPI ++Y V++ELLV+ HL ST+ YDP FALG VT+YD LME Sbjct: 6 TLSATKAAFFSAYPRPINAVYRRVVEELLVELHLTTVNSTFVYDPFFALGLVTLYDGLME 65 Query: 469 GYPSNEDRDAIFKS 510 Y E R+AIF + Sbjct: 66 AYHPPEQREAIFNA 79
>THF1_SYNJA (Q2JSQ3) Protein thf1| Length = 239 Score = 76.6 bits (187), Expect = 4e-14 Identities = 37/74 (50%), Positives = 48/74 (64%) Frame = +1 Query: 289 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 468 T++ TK F +Y RPI + Y V++ELLV+ HL S + YDP FALG VT+YD LME Sbjct: 6 TLSATKAAFFSAYPRPINAAYRRVVEELLVELHLTTVNSAFVYDPFFALGLVTLYDSLME 65 Query: 469 GYPSNEDRDAIFKS 510 Y E R+AIF + Sbjct: 66 AYHPPEQREAIFNA 79
>THF1_ANASP (Q8YZ41) Protein thf1| Length = 233 Score = 75.5 bits (184), Expect = 8e-14 Identities = 32/74 (43%), Positives = 50/74 (67%) Frame = +1 Query: 289 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 468 TV+DTK F + RPI +IY V++EL+V+ HL+ + Y+P++ALG VT +D+ ME Sbjct: 6 TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFME 65 Query: 469 GYPSNEDRDAIFKS 510 GY D+++IF + Sbjct: 66 GYQPERDKESIFSA 79
>THF1_GLOVI (Q7NKS7) Protein thf1| Length = 228 Score = 75.5 bits (184), Expect = 8e-14 Identities = 35/74 (47%), Positives = 49/74 (66%) Frame = +1 Query: 289 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 468 TV+D+K F +Y RP+ SIY V+ ELLV+ HL+ +++DP+FA G +T Y LME Sbjct: 6 TVSDSKRAFFAAYPRPVNSIYRRVIDELLVEVHLLITNQDFRHDPLFATGLLTAYQALME 65 Query: 469 GYPSNEDRDAIFKS 510 GY E RDAI ++ Sbjct: 66 GYTPVEQRDAILRA 79
>THF1_ANAVT (Q3M4B2) Protein thf1| Length = 233 Score = 74.3 bits (181), Expect = 2e-13 Identities = 31/74 (41%), Positives = 50/74 (67%) Frame = +1 Query: 289 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 468 TV+DTK F + RPI +IY V++EL+V+ HL+ + Y+P++ALG VT +D+ M+ Sbjct: 6 TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFMQ 65 Query: 469 GYPSNEDRDAIFKS 510 GY D+++IF + Sbjct: 66 GYQPERDKESIFSA 79
>THF1_SYNY3 (P73956) Protein thf1| Length = 240 Score = 73.2 bits (178), Expect = 4e-13 Identities = 34/74 (45%), Positives = 45/74 (60%) Frame = +1 Query: 289 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 468 TV+D K F Y RPI SIY ++ELLV+ HL+ + YDP+FALG VT ++ M+ Sbjct: 6 TVSDAKRKFFTHYSRPISSIYRRFVEELLVEMHLLSVNIDFTYDPIFALGIVTSFNSFMQ 65 Query: 469 GYPSNEDRDAIFKS 510 GY E AIF + Sbjct: 66 GYQPAEQLPAIFNA 79
>THF1_SYNP7 (Q31MY4) Protein thf1| Length = 254 Score = 68.2 bits (165), Expect = 1e-11 Identities = 30/63 (47%), Positives = 43/63 (68%) Frame = +1 Query: 286 PTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLM 465 PTV+D+K F +Y RPI +Y V++ELLV+ HL+ +++ YDP+FALG VT +D M Sbjct: 5 PTVSDSKRAFYAAYPRPINPLYRRVVEELLVEIHLLSVNTSFVYDPLFALGVVTAFDSFM 64 Query: 466 EGY 474 Y Sbjct: 65 SSY 67
>THF1_SYNP6 (Q5N664) Protein thf1| Length = 254 Score = 68.2 bits (165), Expect = 1e-11 Identities = 30/63 (47%), Positives = 43/63 (68%) Frame = +1 Query: 286 PTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLM 465 PTV+D+K F +Y RPI +Y V++ELLV+ HL+ +++ YDP+FALG VT +D M Sbjct: 5 PTVSDSKRAFYAAYPRPINPLYRRVVEELLVEIHLLSVNTSFVYDPLFALGVVTAFDSFM 64 Query: 466 EGY 474 Y Sbjct: 65 SSY 67
>THF1_SYNSC (Q3AJN7) Protein thf1| Length = 215 Score = 57.0 bits (136), Expect = 3e-08 Identities = 24/74 (32%), Positives = 47/74 (63%) Frame = +1 Query: 289 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 468 T+AD+K F +++ I +Y + ELLV+ HL+ ++S ++ + +F++G TV+D ++ Sbjct: 6 TIADSKRAFHQAFPHVIAPLYRRLADELLVELHLLSHQSRFEANELFSVGLCTVFDTFIK 65 Query: 469 GYPSNEDRDAIFKS 510 GY DA+F++ Sbjct: 66 GYRPEAQTDALFRA 79
>THF1_SYNPX (Q7U6N6) Protein thf1| Length = 212 Score = 54.3 bits (129), Expect = 2e-07 Identities = 24/74 (32%), Positives = 46/74 (62%) Frame = +1 Query: 289 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 468 T+AD+K F +++ I +Y + ELLV+ HL+ +++T+Q + +FA+G TV+++ + Sbjct: 6 TIADSKRAFHQAFPHVIAPLYRRIADELLVELHLLSHQATFQANSLFAVGLKTVFERFTQ 65 Query: 469 GYPSNEDRDAIFKS 510 GY E A+ + Sbjct: 66 GYRPMEHPAALLSA 79
>THF1_PROMT (Q46L45) Protein thf1| Length = 199 Score = 53.9 bits (128), Expect = 3e-07 Identities = 23/72 (31%), Positives = 42/72 (58%) Frame = +1 Query: 289 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 468 T++D+K +F K + IP+IY + ELLV+ HL+ ++ ++ D +F+ G V+ + Sbjct: 6 TISDSKSDFHKEFPYVIPAIYRKLADELLVELHLLSHQKNFKKDSIFSTGLKEVFSKFTS 65 Query: 469 GYPSNEDRDAIF 504 GY +E +F Sbjct: 66 GYKPSEHATKLF 77
>THF1_SYNS9 (Q3AY05) Protein thf1| Length = 215 Score = 53.9 bits (128), Expect = 3e-07 Identities = 24/66 (36%), Positives = 41/66 (62%) Frame = +1 Query: 289 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 468 T+AD+K F +++ I +Y + ELLV+ HL+ ++S+++ P+FA+G TV+D Sbjct: 6 TIADSKRAFHQAFPHVIAPLYRRLADELLVELHLLSHQSSFKTTPLFAVGLCTVFDTFSA 65 Query: 469 GYPSNE 486 GY E Sbjct: 66 GYRPEE 71
>THF1_PROMM (Q7V7R3) Protein thf1| Length = 243 Score = 50.4 bits (119), Expect = 3e-06 Identities = 23/62 (37%), Positives = 35/62 (56%) Frame = +1 Query: 289 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 468 T+AD+K F + IPS+Y ELLV+ HL+ ++ + D +FA+G V+D Sbjct: 6 TIADSKRAFNHDFPHVIPSLYRRTTDELLVELHLLSHQKHFHPDALFAIGLSQVFDVFTS 65 Query: 469 GY 474 GY Sbjct: 66 GY 67
>AKAP2_HUMAN (Q9Y2D5) A-kinase anchor protein 2 (Protein kinase A-anchoring| protein 2) (PRKA2) (AKAP-2) Length = 1103 Score = 30.4 bits (67), Expect = 3.0 Identities = 19/62 (30%), Positives = 28/62 (45%) Frame = -1 Query: 290 VGGISPAVMTQRTTEREPRRALALSMTPPETLTAAVAVDGLQSAARRSAANGSDDMAAMG 111 VGG+SP V T+ EP A PP + + D + A R + + S A+G Sbjct: 318 VGGLSPPV--HEATQPEPTERTASRQAPPHIELSNSSPDPMAEAERTNGHSPSQPRDALG 375 Query: 110 ES 105 +S Sbjct: 376 DS 377
>HXA4_HUMAN (Q00056) Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4)| Length = 320 Score = 29.3 bits (64), Expect = 6.8 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Frame = +3 Query: 21 APVNYPFALTGGVDHP-PPYPVREPVAARGLSHGGH 125 A YP+ GG PP P + P A+G +HG H Sbjct: 96 ADTAYPYGYRGGASPGRPPQPEQPPAQAKGPAHGLH 131
>SN_HUMAN (Q9BZZ2) Sialoadhesin precursor (Sialic acid-binding Ig-like| lectin-1) (Siglec-1) (CD169 antigen) Length = 1709 Score = 29.3 bits (64), Expect = 6.8 Identities = 13/19 (68%), Positives = 15/19 (78%) Frame = +3 Query: 81 VREPVAARGLSHGGHIVAS 137 V EP+A LSHGGHI+AS Sbjct: 436 VSEPLATLVLSHGGHILAS 454
>PFTB_CAEEL (P41992) Probable protein farnesyltransferase beta subunit (EC| 2.5.1.58) (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta) Length = 335 Score = 29.3 bits (64), Expect = 6.8 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = +3 Query: 111 SHGGHIVASVRCTAPSGRLEAVDGDCRGERLRWRHAQREGSAG 239 SH G I V A +GRL+ +D D E L +R G G Sbjct: 195 SHSGQIYCCVGALAIAGRLDEIDRDRTAEWLAFRQCDSGGLNG 237
>SMAD4_PIG (Q9GKQ9) Mothers against decapentaplegic homolog 4 (SMAD 4)| (Mothers against DPP homolog 4) (Smad4) Length = 552 Score = 28.9 bits (63), Expect = 8.9 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 3 GTRLAPAPVNYPFALTGGVDHPPPYP 80 G+R AP P N P G + H PP P Sbjct: 270 GSRTAPYPPNLPHHQNGHLQHHPPMP 295
>HMDH1_ORYSA (P48019) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (EC| 1.1.1.34) (HMG-CoA reductase 1) Length = 509 Score = 28.9 bits (63), Expect = 8.9 Identities = 28/69 (40%), Positives = 31/69 (44%), Gaps = 7/69 (10%) Frame = +3 Query: 69 PPYPVREPVAARGLSHGG--HIVASVRCTA-PSGRLEAVDGDC-RGERLR---WRHAQRE 227 PP P G+ G IVA+V A PS RLE+ GDC R RLR R Sbjct: 77 PPEPAPMHGHGGGMMEGDDEEIVAAVASGALPSHRLESRLGDCRRAARLRREALRRVTGR 136 Query: 228 GSAGLTFGG 254 G GL F G Sbjct: 137 GVEGLPFDG 145
>FMT_MYCGE (P47605) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 311 Score = 28.9 bits (63), Expect = 8.9 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = -3 Query: 495 IPVLVAGVPFHKLVIDGDKSKSKHRIILIRTFVSHQMLLHQKFL*NCTVNAWN 337 +P+L G P H +I+G K + I L++ + + Q FL N N WN Sbjct: 111 LPLLRGGAPLHWTIINGFKKSALSVIQLVKKMDAGPIWKQQDFLVN---NDWN 160 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,599,898 Number of Sequences: 219361 Number of extensions: 1636331 Number of successful extensions: 5690 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 5435 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5688 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
