ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY736122.1| Triticum aestivum chloroplast inositol phosphatas... 722 0.0
2gb|AY377991.1| Triticum aestivum chloroplast-localized Ptr ToxA-... 694 0.0
3gb|AY104484.1| Zea mays PCO107854 mRNA sequence 305 8e-80
4ref|XM_478693.1| Oryza sativa (japonica cultivar-group), mRNA 280 4e-72
5gb|AY224446.1| Oryza sativa (japonica cultivar-group) isolate 23... 280 4e-72
6dbj|AK064914.1| Oryza sativa (japonica cultivar-group) cDNA clon... 280 4e-72
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 250 4e-63
8dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic D... 250 4e-63
9ref|NM_127659.1| Arabidopsis thaliana THF1 AT2G20890 (THF1) mRNA... 64 5e-07
10gb|AC006234.4| Arabidopsis thaliana chromosome 2 clone F5H14 map... 64 5e-07
11gb|AY081596.1| Arabidopsis thaliana unknown protein (At2g20890) ... 64 5e-07
12gb|AY062799.1| Arabidopsis thaliana Unknown protein (At2g20890; ... 64 5e-07
13emb|BX818901.1|CNS0A8Y0 Arabidopsis thaliana Full-length cDNA Co... 64 5e-07
14emb|BX820020.1|CNS0A8FF Arabidopsis thaliana Full-length cDNA Co... 64 5e-07
15gb|AY087394.1| Arabidopsis thaliana clone 34875 mRNA, complete s... 64 5e-07
16gb|AY899908.1| Arabidopsis thaliana chloroplast thylakoid format... 64 5e-07
17gb|AC003694.1|AC003694 Mus musculus chromosome 19, clone CIT282B... 48 0.029
18gb|AE015451.1| Pseudomonas putida KT2440 complete genome 46 0.11
19gb|AY190958.1| Drosophila virilis clone DVIF01_45_J10 (D1457) ge... 44 0.45
20gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 44 0.45
21gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 1.8
22emb|BX820185.1|CNS0A8J4 Arabidopsis thaliana Full-length cDNA Co... 42 1.8
23dbj|AB089954.1| Micromonospora griseorubida gene cluster for the... 42 1.8
24ref|NM_103989.2| Arabidopsis thaliana structural molecule AT1G51... 40 7.0
25gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence 40 7.0
26gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 7.0
27gb|AC140332.3| Mus musculus BAC clone RP23-408K9 from chromosome... 40 7.0
28gb|AY254102.1| Streptomyces castaneoglobisporus MelC gene, compl... 40 7.0
29emb|BX813641.1|CNS0AC3Y Arabidopsis thaliana Full-length cDNA Co... 40 7.0
30emb|BX814945.1|CNS0ABC0 Arabidopsis thaliana Full-length cDNA Co... 40 7.0
31gb|AC079828.4|AC079828 Arabidopsis thaliana chromosome 1 BAC F23... 40 7.0
32gb|BT005347.1| Arabidopsis thaliana At1g51115 mRNA, complete cds 40 7.0
33dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 7.0
34gb|AY087688.1| Arabidopsis thaliana clone 37689 mRNA, complete s... 40 7.0
35dbj|AK118545.1| Arabidopsis thaliana At1g51110 mRNA for unknown ... 40 7.0
36emb|AJ131520.2|TMA131520 Tropaeolum majus mRNA for alpha-D-xylos... 40 7.0
37gb|AY262106.1| Newcastle disease virus AF2240 large protein (L) ... 40 7.0
38gb|AC149086.4| Mus musculus BAC clone RP24-245L1 from 19, comple... 40 7.0
39emb|AL109767.7|CNS018OX Human chromosome 14 DNA sequence BAC R-8... 40 7.0
40emb|AL132819.6|CNS01DTO Human chromosome 14 DNA sequence BAC C-2... 40 7.0 
>gb|AY736122.1| Triticum aestivum chloroplast inositol phosphatase-like protein
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 909

 Score =  722 bits (364), Expect = 0.0
 Identities = 424/444 (95%)
 Strand = Plus / Plus

                                                                       
Query: 75  tatccagtgcgagagccggtagcagcccgaggactctcccatggcggccatatcgtcgct 134
           ||||| ||| |||||||||  | |||||||||| ||||||||||||||||||||||||||
Sbjct: 1   tatcccgtgagagagccggcggtagcccgaggagtctcccatggcggccatatcgtcgct 60

                                                                       
Query: 135 tccgttcgctgcactgcgccgagcggccgactggaggccgtcgacggcgactgccgcggt 194
           ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 61  tcctttcgctgcactgcgccgagcggccgactggaggccgtcaacggcgactgccgcggt 120

                                                                       
Query: 195 gagcgtctccggtggcgtcatgctcaacgcgagggctcggcggggctcacgttcggtggt 254
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 121 gagcgtctccggtggcgtcatgctcaacgcgagggctcggcggggatcacgttcggtggt 180

                                                                       
Query: 255 gcgctgcgtcatcactgccggtgatattccacctactgtggcagatacaaagatgaactt 314
           ||||||||||   || || |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 181 gcgctgcgtcgctacggctggtgatatcccacctactgtggcagatacaaagatgaactt 240

                                                                       
Query: 315 cctgaagtcgtacaaacgtcctattccaagcatttacagtacagttctacaagaactttt 374
           ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 241 cctgaagtcatacaaacgtcctattccaagcatttacagtacagtcctacaagaactttt 300

                                                                       
Query: 375 ggtgcagcaacatctgatgagatacaaaagtacgtatcagtatgatcctgtgtttgctct 434
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 301 ggtgcagcaacatctgatgagatacaaaagtacctatcagtatgatcctgtgtttgctct 360

                                                                       
Query: 435 tggatttgtcaccgtctatgaccagcttatggaagggtaccccagcaacgaggacaggga 494
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 361 tggatttgtcaccgtctatgaccagcttatggaagggtaccccagcaccgaggacaggga 420

                                   
Query: 495 tgccatcttcaagtcatatgtaac 518
           |||||||||||||||||| |||||
Sbjct: 421 tgccatcttcaagtcatacgtaac 444
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>gb|AY377991.1| Triticum aestivum chloroplast-localized Ptr ToxA-binding protein1
           (TaThf1) mRNA, complete cds; nuclear gene for
           chloroplast product
          Length = 1130

 Score =  694 bits (350), Expect = 0.0
 Identities = 395/410 (96%)
 Strand = Plus / Plus

                                                                       
Query: 109 tctcccatggcggccatatcgtcgcttccgttcgctgcactgcgccgagcggccgactgg 168
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1   tctcccatggcggccatatcgtcgcttcctttcgctgcactgcgccgagcggccgactgg 60

                                                                       
Query: 169 aggccgtcgacggcgactgccgcggtgagcgtctccggtggcgtcatgctcaacgcgagg 228
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aggccgtcaacggcgactgccgcggtgagcgtctccggtggcgtcatgctcaacgcgagg 120

                                                                       
Query: 229 gctcggcggggctcacgttcggtggtgcgctgcgtcatcactgccggtgatattccacct 288
           ||||||||||| ||||||||||||||||||||||||   || || |||||||| ||||||
Sbjct: 121 gctcggcggggatcacgttcggtggtgcgctgcgtcgctacggctggtgatatcccacct 180

                                                                       
Query: 289 actgtggcagatacaaagatgaacttcctgaagtcgtacaaacgtcctattccaagcatt 348
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 181 actgtggcagatacaaagatgaacttcctgaagtcatacaaacgtcctattccaagcatt 240

                                                                       
Query: 349 tacagtacagttctacaagaacttttggtgcagcaacatctgatgagatacaaaagtacg 408
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 241 tacagtacagtcctacaagaacttttggtgcagcaacatctgatgagatacaaaagtacc 300

                                                                       
Query: 409 tatcagtatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaa 468
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 301 tatcagtatgatcctgtgtttgctcttggatttgtcactgtctatgaccagcttatggaa 360

                                                             
Query: 469 gggtaccccagcaacgaggacagggatgccatcttcaagtcatatgtaac 518
           ||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 361 gggtaccccagcaccgaggacagggatgccatcttcaagtcatacgtaac 410
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>gb|AY104484.1| Zea mays PCO107854 mRNA sequence
          Length = 842

 Score =  305 bits (154), Expect = 8e-80
 Identities = 342/405 (84%), Gaps = 6/405 (1%)
 Strand = Plus / Plus

                                                                       
Query: 114 catggcggccatatcgtcgcttccgttcgctgcactgcgccgagcggccgactggaggcc 173
           |||||||||||||||||| ||||| ||||| || |||||| |||| ||||| ||||||||
Sbjct: 128 catggcggccatatcgtcacttcccttcgcggcgctgcgcggagccgccgagtggaggcc 187

                                                                       
Query: 174 gtcgacggcgactgccgcggtgagcgtctccggtggcgtcatgctcaacgcgagggctcg 233
           |||| || || | || ||      ||||||||| | |||| |||||| ||||||| ||||
Sbjct: 188 gtcgtcgacggcggcggc------cgtctccggcgccgtcgtgctcagcgcgaggtctcg 241

                                                                       
Query: 234 gcggggctcacgttcggtggtgcgctgcgtcatcactgccggtgatattccacctactgt 293
            |||||||| || ||||||||||| || |||  |||  | |||||| | ||||| |||||
Sbjct: 242 ccggggctcgcgctcggtggtgcgatgtgtcgccacgacgggtgatgtcccacccactgt 301

                                                                       
Query: 294 ggcagatacaaagatgaacttcctgaagtcgtacaaacgtcctattccaagcatttacag 353
            ||||| |||||  |||||||||| ||||| |||||||| || || ||||||||||||||
Sbjct: 302 cgcagaaacaaaactgaacttccttaagtcatacaaacgcccaatcccaagcatttacag 361

                                                                       
Query: 354 tacagttctacaagaacttttggtgcagcaacatctgatgagatacaaaagtacgtatca 413
           | ||||  ||||||||||||||||||||||||| ||||||||||||||||  || |||||
Sbjct: 362 tgcagtcttacaagaacttttggtgcagcaacacctgatgagatacaaaaaaacctatca 421

                                                                       
Query: 414 gtatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagggta 473
           ||||||| |||||||||||||||| || ||||| |||||||| ||||| |||||||||||
Sbjct: 422 gtatgatgctgtgtttgctcttggcttcgtcactgtctatgatcagctcatggaagggta 481

                                                        
Query: 474 ccccagcaacgaggacagggatgccatcttcaagtcatatgtaac 518
           ||||||||| ||||||| |||| ||||||||||| ||||| ||||
Sbjct: 482 ccccagcaatgaggacaaggattccatcttcaaggcatatataac 526
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>ref|XM_478693.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1153

 Score =  280 bits (141), Expect = 4e-72
 Identities = 258/297 (86%)
 Strand = Plus / Plus

                                                                       
Query: 210 cgtcatgctcaacgcgagggctcggcggggctcacgttcggtggtgcgctgcgtcatcac 269
           |||| |||||| || |||| | |||||||| || || ||||||||||||||||||  |||
Sbjct: 198 cgtcgtgctcagcgtgaggccccggcgggggtcgcgctcggtggtgcgctgcgtcgccac 257

                                                                       
Query: 270 tgccggtgatattccacctactgtggcagatacaaagatgaacttcctgaagtcgtacaa 329
            || || ||| ||||||| ||||| ||||| ||||||||||| || || ||||| |||||
Sbjct: 258 ggcgggcgatgttccacccactgtcgcagaaacaaagatgaattttctcaagtcatacaa 317

                                                                       
Query: 330 acgtcctattccaagcatttacagtacagttctacaagaacttttggtgcagcaacatct 389
            |||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 318 gcgtcctatcctaagcatttacagtacagttctacaagaacttttggtacagcaacatct 377

                                                                       
Query: 390 gatgagatacaaaagtacgtatcagtatgatcctgtgtttgctcttggatttgtcaccgt 449
           ||||||||||||||  || ||||| |||||| | |||||||||||||| ||||| |||||
Sbjct: 378 gatgagatacaaaacaacatatcaatatgatgcggtgtttgctcttggttttgtgaccgt 437

                                                                    
Query: 450 ctatgaccagcttatggaagggtaccccagcaacgaggacagggatgccatcttcaa 506
           ||||||||| || |||||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct: 438 ctatgaccaactcatggaagggtaccctagcaatgaggatagggatgcaatcttcaa 494



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 63/69 (91%)
 Strand = Plus / Plus

                                                                       
Query: 115 atggcggccatatcgtcgcttccgttcgctgcactgcgccgagcggccgactggaggccg 174
           |||||||||||||| |||||||| ||||| ||||||||||| || |||||||| ||||||
Sbjct: 100 atggcggccatatcttcgcttcccttcgcggcactgcgccgggccgccgactgcaggccg 159

                    
Query: 175 tcgacggcg 183
           |||||||||
Sbjct: 160 tcgacggcg 168
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>gb|AY224446.1| Oryza sativa (japonica cultivar-group) isolate 23045 inositol
           phosphatase-like protein mRNA, complete cds
          Length = 864

 Score =  280 bits (141), Expect = 4e-72
 Identities = 258/297 (86%)
 Strand = Plus / Plus

                                                                       
Query: 210 cgtcatgctcaacgcgagggctcggcggggctcacgttcggtggtgcgctgcgtcatcac 269
           |||| |||||| || |||| | |||||||| || || ||||||||||||||||||  |||
Sbjct: 99  cgtcgtgctcagcgtgaggccccggcgggggtcgcgctcggtggtgcgctgcgtcgccac 158

                                                                       
Query: 270 tgccggtgatattccacctactgtggcagatacaaagatgaacttcctgaagtcgtacaa 329
            || || ||| ||||||| ||||| ||||| ||||||||||| || || ||||| |||||
Sbjct: 159 ggcgggcgatgttccacccactgtcgcagaaacaaagatgaattttctcaagtcatacaa 218

                                                                       
Query: 330 acgtcctattccaagcatttacagtacagttctacaagaacttttggtgcagcaacatct 389
            |||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 219 gcgtcctatcctaagcatttacagtacagttctacaagaacttttggtacagcaacatct 278

                                                                       
Query: 390 gatgagatacaaaagtacgtatcagtatgatcctgtgtttgctcttggatttgtcaccgt 449
           ||||||||||||||  || ||||| |||||| | |||||||||||||| ||||| |||||
Sbjct: 279 gatgagatacaaaacaacatatcaatatgatgcggtgtttgctcttggttttgtgaccgt 338

                                                                    
Query: 450 ctatgaccagcttatggaagggtaccccagcaacgaggacagggatgccatcttcaa 506
           ||||||||| || |||||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct: 339 ctatgaccaactcatggaagggtaccctagcaatgaggatagggatgcaatcttcaa 395



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 63/69 (91%)
 Strand = Plus / Plus

                                                                       
Query: 115 atggcggccatatcgtcgcttccgttcgctgcactgcgccgagcggccgactggaggccg 174
           |||||||||||||| |||||||| ||||| ||||||||||| || |||||||| ||||||
Sbjct: 1   atggcggccatatcttcgcttcccttcgcggcactgcgccgggccgccgactgcaggccg 60

                    
Query: 175 tcgacggcg 183
           |||||||||
Sbjct: 61  tcgacggcg 69
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>dbj|AK064914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M13, full
           insert sequence
          Length = 1152

 Score =  280 bits (141), Expect = 4e-72
 Identities = 258/297 (86%)
 Strand = Plus / Plus

                                                                       
Query: 210 cgtcatgctcaacgcgagggctcggcggggctcacgttcggtggtgcgctgcgtcatcac 269
           |||| |||||| || |||| | |||||||| || || ||||||||||||||||||  |||
Sbjct: 197 cgtcgtgctcagcgtgaggccccggcgggggtcgcgctcggtggtgcgctgcgtcgccac 256

                                                                       
Query: 270 tgccggtgatattccacctactgtggcagatacaaagatgaacttcctgaagtcgtacaa 329
            || || ||| ||||||| ||||| ||||| ||||||||||| || || ||||| |||||
Sbjct: 257 ggcgggcgatgttccacccactgtcgcagaaacaaagatgaattttctcaagtcatacaa 316

                                                                       
Query: 330 acgtcctattccaagcatttacagtacagttctacaagaacttttggtgcagcaacatct 389
            |||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 317 gcgtcctatcctaagcatttacagtacagttctacaagaacttttggtacagcaacatct 376

                                                                       
Query: 390 gatgagatacaaaagtacgtatcagtatgatcctgtgtttgctcttggatttgtcaccgt 449
           ||||||||||||||  || ||||| |||||| | |||||||||||||| ||||| |||||
Sbjct: 377 gatgagatacaaaacaacatatcaatatgatgcggtgtttgctcttggttttgtgaccgt 436

                                                                    
Query: 450 ctatgaccagcttatggaagggtaccccagcaacgaggacagggatgccatcttcaa 506
           ||||||||| || |||||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct: 437 ctatgaccaactcatggaagggtaccctagcaatgaggatagggatgcaatcttcaa 493



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 63/69 (91%)
 Strand = Plus / Plus

                                                                       
Query: 115 atggcggccatatcgtcgcttccgttcgctgcactgcgccgagcggccgactggaggccg 174
           |||||||||||||| |||||||| ||||| ||||||||||| || |||||||| ||||||
Sbjct: 99  atggcggccatatcttcgcttcccttcgcggcactgcgccgggccgccgactgcaggccg 158

                    
Query: 175 tcgacggcg 183
           |||||||||
Sbjct: 159 tcgacggcg 167
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  250 bits (126), Expect = 4e-63
 Identities = 201/226 (88%)
 Strand = Plus / Minus

                                                                            
Query: 281      ttccacctactgtggcagatacaaagatgaacttcctgaagtcgtacaaacgtcctattc 340
                ||||||| ||||| ||||| ||||||||||| || || ||||| ||||| |||||||| |
Sbjct: 22268329 ttccacccactgtcgcagaaacaaagatgaattttctcaagtcatacaagcgtcctatcc 22268270

                                                                            
Query: 341      caagcatttacagtacagttctacaagaacttttggtgcagcaacatctgatgagataca 400
                 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 22268269 taagcatttacagtacagttctacaagaacttttggtacagcaacatctgatgagataca 22268210

                                                                            
Query: 401      aaagtacgtatcagtatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagc 460
                |||  || ||||| |||||| | |||||||||||||| ||||| |||||||||||||| |
Sbjct: 22268209 aaacaacatatcaatatgatgcggtgtttgctcttggttttgtgaccgtctatgaccaac 22268150

                                                              
Query: 461      ttatggaagggtaccccagcaacgaggacagggatgccatcttcaa 506
                | |||||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct: 22268149 tcatggaagggtaccctagcaatgaggatagggatgcaatcttcaa 22268104



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                            
Query: 115      atggcggccatatcgtcgcttccgttcgctgcactgcgccgagcggccgactggaggccg 174
                |||||||||||||| |||||||| ||||| ||||||||||| || |||||||| ||||||
Sbjct: 22269475 atggcggccatatcttcgcttcccttcgcggcactgcgccgggccgccgactgcaggccg 22269416

                         
Query: 175      tcgacggcg 183
                |||||||||
Sbjct: 22269415 tcgacggcg 22269407



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                       
Query: 210      cgtcatgctcaacgcgagggctcggcggggctcacgttcggtggtgcgctgcgtc 264
                |||| |||||| || |||| | |||||||| || || ||||||||||||||||||
Sbjct: 22269377 cgtcgtgctcagcgtgaggccccggcgggggtcgcgctcggtggtgcgctgcgtc 22269323
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>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0567H04
          Length = 181420

 Score =  250 bits (126), Expect = 4e-63
 Identities = 201/226 (88%)
 Strand = Plus / Minus

                                                                         
Query: 281   ttccacctactgtggcagatacaaagatgaacttcctgaagtcgtacaaacgtcctattc 340
             ||||||| ||||| ||||| ||||||||||| || || ||||| ||||| |||||||| |
Sbjct: 73575 ttccacccactgtcgcagaaacaaagatgaattttctcaagtcatacaagcgtcctatcc 73516

                                                                         
Query: 341   caagcatttacagtacagttctacaagaacttttggtgcagcaacatctgatgagataca 400
              |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 73515 taagcatttacagtacagttctacaagaacttttggtacagcaacatctgatgagataca 73456

                                                                         
Query: 401   aaagtacgtatcagtatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagc 460
             |||  || ||||| |||||| | |||||||||||||| ||||| |||||||||||||| |
Sbjct: 73455 aaacaacatatcaatatgatgcggtgtttgctcttggttttgtgaccgtctatgaccaac 73396

                                                           
Query: 461   ttatggaagggtaccccagcaacgaggacagggatgccatcttcaa 506
             | |||||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct: 73395 tcatggaagggtaccctagcaatgaggatagggatgcaatcttcaa 73350



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                         
Query: 115   atggcggccatatcgtcgcttccgttcgctgcactgcgccgagcggccgactggaggccg 174
             |||||||||||||| |||||||| ||||| ||||||||||| || |||||||| ||||||
Sbjct: 74721 atggcggccatatcttcgcttcccttcgcggcactgcgccgggccgccgactgcaggccg 74662

                      
Query: 175   tcgacggcg 183
             |||||||||
Sbjct: 74661 tcgacggcg 74653



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                    
Query: 210   cgtcatgctcaacgcgagggctcggcggggctcacgttcggtggtgcgctgcgtc 264
             |||| |||||| || |||| | |||||||| || || ||||||||||||||||||
Sbjct: 74623 cgtcgtgctcagcgtgaggccccggcgggggtcgcgctcggtggtgcgctgcgtc 74569
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>ref|NM_127659.1| Arabidopsis thaliana THF1 AT2G20890 (THF1) mRNA, complete cds
          Length = 1246

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 415 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 470
           ||||||||||| ||||| |||||||||||||| || ||||| ||||| ||||||||
Sbjct: 437 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 492
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>gb|AC006234.4| Arabidopsis thaliana chromosome 2 clone F5H14 map mi148, complete
             sequence
          Length = 129667

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                     
Query: 415   tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 470
             ||||||||||| ||||| |||||||||||||| || ||||| ||||| ||||||||
Sbjct: 43483 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 43428
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>gb|AY081596.1| Arabidopsis thaliana unknown protein (At2g20890) mRNA, complete cds
          Length = 953

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 415 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 470
           ||||||||||| ||||| |||||||||||||| || ||||| ||||| ||||||||
Sbjct: 322 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 377
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>gb|AY062799.1| Arabidopsis thaliana Unknown protein (At2g20890; F5H14.14) mRNA,
           complete cds
          Length = 1143

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 415 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 470
           ||||||||||| ||||| |||||||||||||| || ||||| ||||| ||||||||
Sbjct: 432 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 487
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>emb|BX818901.1|CNS0A8Y0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB24ZE08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1114

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 415 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 470
           ||||||||||| ||||| |||||||||||||| || ||||| ||||| ||||||||
Sbjct: 419 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 474
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>emb|BX820020.1|CNS0A8FF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS62ZD04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1131

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 415 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 470
           ||||||||||| ||||| |||||||||||||| || ||||| ||||| ||||||||
Sbjct: 397 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 452
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>gb|AY087394.1| Arabidopsis thaliana clone 34875 mRNA, complete sequence
          Length = 1246

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 415 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 470
           ||||||||||| ||||| |||||||||||||| || ||||| ||||| ||||||||
Sbjct: 437 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 492
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>gb|AY899908.1| Arabidopsis thaliana chloroplast thylakoid formation 1 (THF1) mRNA,
           complete cds; nuclear gene for chloroplast product
          Length = 1245

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 415 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 470
           ||||||||||| ||||| |||||||||||||| || ||||| ||||| ||||||||
Sbjct: 436 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 491
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>gb|AC003694.1|AC003694 Mus musculus chromosome 19, clone CIT282B21, complete sequence
          Length = 186314

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 486   ggacagggatgccatcttcaagtc 509
             ||||||||||||||||||||||||
Sbjct: 44823 ggacagggatgccatcttcaagtc 44800
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 36      ccttttgccctcaccggcggtgt 58
               |||||||||||||||||||||||
Sbjct: 6142967 ccttttgccctcaccggcggtgt 6142989
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>gb|AY190958.1| Drosophila virilis clone DVIF01_45_J10 (D1457) genomic sequence
          Length = 44255

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 193   gtgagcgtctccggtggcgtca 214
             ||||||||||||||||||||||
Sbjct: 10405 gtgagcgtctccggtggcgtca 10384
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 112     cccatggcggccatatcgtcgc 133
               ||||||||||||||||||||||
Sbjct: 2996924 cccatggcggccatatcgtcgc 2996945
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 187     gccgcggtgagcgtctccggtggcg 211
               ||||||| |||||||||||||||||
Sbjct: 2649540 gccgcggcgagcgtctccggtggcg 2649516
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>emb|BX820185.1|CNS0A8J4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS88ZH01 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1158

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 49/57 (85%), Gaps = 1/57 (1%)
 Strand = Plus / Plus

                                                                    
Query: 415 tatgatcctgtgtttgctct-tggatttgtcaccgtctatgaccagcttatggaagg 470
           ||||||||||| ||||| |  |||||||||||| || ||||| ||||| ||||||||
Sbjct: 420 tatgatcctgtttttgccccgtggatttgtcactgtatatgatcagctcatggaagg 476
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>dbj|AB089954.1| Micromonospora griseorubida gene cluster for the polyketide macrolide
             mycinamicin, partial and comeplete cds
          Length = 58343

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 46    tcaccggcggtgtcgaccatc 66
             |||||||||||||||||||||
Sbjct: 39142 tcaccggcggtgtcgaccatc 39162
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>ref|NM_103989.2| Arabidopsis thaliana structural molecule AT1G51110 mRNA, complete cds
          Length = 1437

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 497  ccatcttcaagtcatatgta 516
            ||||||||||||||||||||
Sbjct: 1116 ccatcttcaagtcatatgta 1097
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>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 173    cgtcgacggcgactgccgcg 192
              ||||||||||||||||||||
Sbjct: 948933 cgtcgacggcgactgccgcg 948914
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    cgtcgacggcgactgccgcg 192
              ||||||||||||||||||||
Sbjct: 247276 cgtcgacggcgactgccgcg 247295
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>gb|AC140332.3| Mus musculus BAC clone RP23-408K9 from chromosome 19, complete
            sequence
          Length = 206515

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 486  ggacagggatgccatcttcaagtc 509
            |||||||| |||||||||||||||
Sbjct: 7961 ggacagggctgccatcttcaagtc 7938
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>gb|AY254102.1| Streptomyces castaneoglobisporus MelC gene, complete cds
          Length = 381

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 176 cgacggcgactgccgcggtgagcg 199
           |||||||| |||||||||||||||
Sbjct: 49  cgacggcggctgccgcggtgagcg 26
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>emb|BX813641.1|CNS0AC3Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB2ZA12 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1271

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 497  ccatcttcaagtcatatgta 516
            ||||||||||||||||||||
Sbjct: 1075 ccatcttcaagtcatatgta 1056
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>emb|BX814945.1|CNS0ABC0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS1ZF08 of Adult vegetative tissue of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1308

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 497  ccatcttcaagtcatatgta 516
            ||||||||||||||||||||
Sbjct: 1085 ccatcttcaagtcatatgta 1066
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>gb|AC079828.4|AC079828 Arabidopsis thaliana chromosome 1 BAC F23H24 genomic sequence, complete
             sequence
          Length = 45337

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 497   ccatcttcaagtcatatgta 516
             ||||||||||||||||||||
Sbjct: 18104 ccatcttcaagtcatatgta 18123
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>gb|BT005347.1| Arabidopsis thaliana At1g51115 mRNA, complete cds
          Length = 1230

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 497  ccatcttcaagtcatatgta 516
            ||||||||||||||||||||
Sbjct: 1084 ccatcttcaagtcatatgta 1065
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 50      cggcggtgtcgaccatccgc 69
               ||||||||||||||||||||
Sbjct: 7160641 cggcggtgtcgaccatccgc 7160660
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>gb|AY087688.1| Arabidopsis thaliana clone 37689 mRNA, complete sequence
          Length = 1439

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 497  ccatcttcaagtcatatgta 516
            ||||||||||||||||||||
Sbjct: 1117 ccatcttcaagtcatatgta 1098
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>dbj|AK118545.1| Arabidopsis thaliana At1g51110 mRNA for unknown protein, complete
            cds, clone: RAFL19-77-I08
          Length = 1333

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 497  ccatcttcaagtcatatgta 516
            ||||||||||||||||||||
Sbjct: 1088 ccatcttcaagtcatatgta 1069
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>emb|AJ131520.2|TMA131520 Tropaeolum majus mRNA for alpha-D-xylosidase
          Length = 3151

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 301  acaaagatgaacttcctgaa 320
            ||||||||||||||||||||
Sbjct: 2459 acaaagatgaacttcctgaa 2478
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>gb|AY262106.1| Newcastle disease virus AF2240 large protein (L) mRNA, complete cds
          Length = 6615

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 484  gaggacagggatgccatctt 503
            ||||||||||||||||||||
Sbjct: 4996 gaggacagggatgccatctt 5015
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>gb|AC149086.4| Mus musculus BAC clone RP24-245L1 from 19, complete sequence
          Length = 185283

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 486   ggacagggatgccatcttcaagtc 509
             |||||||| |||||||||||||||
Sbjct: 66251 ggacagggctgccatcttcaagtc 66274
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>emb|AL109767.7|CNS018OX Human chromosome 14 DNA sequence BAC R-889B13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 184039

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 371   ttttggtgcagcaacatctg 390
             ||||||||||||||||||||
Sbjct: 72474 ttttggtgcagcaacatctg 72493
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>emb|AL132819.6|CNS01DTO Human chromosome 14 DNA sequence BAC C-2200A16 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 140073

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 371   ttttggtgcagcaacatctg 390
             ||||||||||||||||||||
Sbjct: 97330 ttttggtgcagcaacatctg 97349


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,206,468
Number of Sequences: 3902068
Number of extensions: 3206468
Number of successful extensions: 68094
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67806
Number of HSP's gapped (non-prelim): 287
length of query: 518
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 495
effective length of database: 17,143,297,704
effective search space: 8485932363480
effective search space used: 8485932363480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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