Clone Name | basd2h08 |
---|---|
Clone Library Name | barley_pub |
>gb|AY736122.1| Triticum aestivum chloroplast inositol phosphatase-like protein mRNA, complete cds; nuclear gene for chloroplast product Length = 909 Score = 722 bits (364), Expect = 0.0 Identities = 424/444 (95%) Strand = Plus / Plus Query: 75 tatccagtgcgagagccggtagcagcccgaggactctcccatggcggccatatcgtcgct 134 ||||| ||| ||||||||| | |||||||||| |||||||||||||||||||||||||| Sbjct: 1 tatcccgtgagagagccggcggtagcccgaggagtctcccatggcggccatatcgtcgct 60 Query: 135 tccgttcgctgcactgcgccgagcggccgactggaggccgtcgacggcgactgccgcggt 194 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 61 tcctttcgctgcactgcgccgagcggccgactggaggccgtcaacggcgactgccgcggt 120 Query: 195 gagcgtctccggtggcgtcatgctcaacgcgagggctcggcggggctcacgttcggtggt 254 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 121 gagcgtctccggtggcgtcatgctcaacgcgagggctcggcggggatcacgttcggtggt 180 Query: 255 gcgctgcgtcatcactgccggtgatattccacctactgtggcagatacaaagatgaactt 314 |||||||||| || || |||||||| |||||||||||||||||||||||||||||||| Sbjct: 181 gcgctgcgtcgctacggctggtgatatcccacctactgtggcagatacaaagatgaactt 240 Query: 315 cctgaagtcgtacaaacgtcctattccaagcatttacagtacagttctacaagaactttt 374 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 241 cctgaagtcatacaaacgtcctattccaagcatttacagtacagtcctacaagaactttt 300 Query: 375 ggtgcagcaacatctgatgagatacaaaagtacgtatcagtatgatcctgtgtttgctct 434 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 301 ggtgcagcaacatctgatgagatacaaaagtacctatcagtatgatcctgtgtttgctct 360 Query: 435 tggatttgtcaccgtctatgaccagcttatggaagggtaccccagcaacgaggacaggga 494 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 361 tggatttgtcaccgtctatgaccagcttatggaagggtaccccagcaccgaggacaggga 420 Query: 495 tgccatcttcaagtcatatgtaac 518 |||||||||||||||||| ||||| Sbjct: 421 tgccatcttcaagtcatacgtaac 444
>gb|AY377991.1| Triticum aestivum chloroplast-localized Ptr ToxA-binding protein1 (TaThf1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1130 Score = 694 bits (350), Expect = 0.0 Identities = 395/410 (96%) Strand = Plus / Plus Query: 109 tctcccatggcggccatatcgtcgcttccgttcgctgcactgcgccgagcggccgactgg 168 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1 tctcccatggcggccatatcgtcgcttcctttcgctgcactgcgccgagcggccgactgg 60 Query: 169 aggccgtcgacggcgactgccgcggtgagcgtctccggtggcgtcatgctcaacgcgagg 228 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aggccgtcaacggcgactgccgcggtgagcgtctccggtggcgtcatgctcaacgcgagg 120 Query: 229 gctcggcggggctcacgttcggtggtgcgctgcgtcatcactgccggtgatattccacct 288 ||||||||||| |||||||||||||||||||||||| || || |||||||| |||||| Sbjct: 121 gctcggcggggatcacgttcggtggtgcgctgcgtcgctacggctggtgatatcccacct 180 Query: 289 actgtggcagatacaaagatgaacttcctgaagtcgtacaaacgtcctattccaagcatt 348 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 181 actgtggcagatacaaagatgaacttcctgaagtcatacaaacgtcctattccaagcatt 240 Query: 349 tacagtacagttctacaagaacttttggtgcagcaacatctgatgagatacaaaagtacg 408 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 tacagtacagtcctacaagaacttttggtgcagcaacatctgatgagatacaaaagtacc 300 Query: 409 tatcagtatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaa 468 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 301 tatcagtatgatcctgtgtttgctcttggatttgtcactgtctatgaccagcttatggaa 360 Query: 469 gggtaccccagcaacgaggacagggatgccatcttcaagtcatatgtaac 518 ||||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct: 361 gggtaccccagcaccgaggacagggatgccatcttcaagtcatacgtaac 410
>gb|AY104484.1| Zea mays PCO107854 mRNA sequence Length = 842 Score = 305 bits (154), Expect = 8e-80 Identities = 342/405 (84%), Gaps = 6/405 (1%) Strand = Plus / Plus Query: 114 catggcggccatatcgtcgcttccgttcgctgcactgcgccgagcggccgactggaggcc 173 |||||||||||||||||| ||||| ||||| || |||||| |||| ||||| |||||||| Sbjct: 128 catggcggccatatcgtcacttcccttcgcggcgctgcgcggagccgccgagtggaggcc 187 Query: 174 gtcgacggcgactgccgcggtgagcgtctccggtggcgtcatgctcaacgcgagggctcg 233 |||| || || | || || ||||||||| | |||| |||||| ||||||| |||| Sbjct: 188 gtcgtcgacggcggcggc------cgtctccggcgccgtcgtgctcagcgcgaggtctcg 241 Query: 234 gcggggctcacgttcggtggtgcgctgcgtcatcactgccggtgatattccacctactgt 293 |||||||| || ||||||||||| || ||| ||| | |||||| | ||||| ||||| Sbjct: 242 ccggggctcgcgctcggtggtgcgatgtgtcgccacgacgggtgatgtcccacccactgt 301 Query: 294 ggcagatacaaagatgaacttcctgaagtcgtacaaacgtcctattccaagcatttacag 353 ||||| ||||| |||||||||| ||||| |||||||| || || |||||||||||||| Sbjct: 302 cgcagaaacaaaactgaacttccttaagtcatacaaacgcccaatcccaagcatttacag 361 Query: 354 tacagttctacaagaacttttggtgcagcaacatctgatgagatacaaaagtacgtatca 413 | |||| ||||||||||||||||||||||||| |||||||||||||||| || ||||| Sbjct: 362 tgcagtcttacaagaacttttggtgcagcaacacctgatgagatacaaaaaaacctatca 421 Query: 414 gtatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagggta 473 ||||||| |||||||||||||||| || ||||| |||||||| ||||| ||||||||||| Sbjct: 422 gtatgatgctgtgtttgctcttggcttcgtcactgtctatgatcagctcatggaagggta 481 Query: 474 ccccagcaacgaggacagggatgccatcttcaagtcatatgtaac 518 ||||||||| ||||||| |||| ||||||||||| ||||| |||| Sbjct: 482 ccccagcaatgaggacaaggattccatcttcaaggcatatataac 526
>ref|XM_478693.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1153 Score = 280 bits (141), Expect = 4e-72 Identities = 258/297 (86%) Strand = Plus / Plus Query: 210 cgtcatgctcaacgcgagggctcggcggggctcacgttcggtggtgcgctgcgtcatcac 269 |||| |||||| || |||| | |||||||| || || |||||||||||||||||| ||| Sbjct: 198 cgtcgtgctcagcgtgaggccccggcgggggtcgcgctcggtggtgcgctgcgtcgccac 257 Query: 270 tgccggtgatattccacctactgtggcagatacaaagatgaacttcctgaagtcgtacaa 329 || || ||| ||||||| ||||| ||||| ||||||||||| || || ||||| ||||| Sbjct: 258 ggcgggcgatgttccacccactgtcgcagaaacaaagatgaattttctcaagtcatacaa 317 Query: 330 acgtcctattccaagcatttacagtacagttctacaagaacttttggtgcagcaacatct 389 |||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 318 gcgtcctatcctaagcatttacagtacagttctacaagaacttttggtacagcaacatct 377 Query: 390 gatgagatacaaaagtacgtatcagtatgatcctgtgtttgctcttggatttgtcaccgt 449 |||||||||||||| || ||||| |||||| | |||||||||||||| ||||| ||||| Sbjct: 378 gatgagatacaaaacaacatatcaatatgatgcggtgtttgctcttggttttgtgaccgt 437 Query: 450 ctatgaccagcttatggaagggtaccccagcaacgaggacagggatgccatcttcaa 506 ||||||||| || |||||||||||||| ||||| ||||| |||||||| |||||||| Sbjct: 438 ctatgaccaactcatggaagggtaccctagcaatgaggatagggatgcaatcttcaa 494 Score = 89.7 bits (45), Expect = 8e-15 Identities = 63/69 (91%) Strand = Plus / Plus Query: 115 atggcggccatatcgtcgcttccgttcgctgcactgcgccgagcggccgactggaggccg 174 |||||||||||||| |||||||| ||||| ||||||||||| || |||||||| |||||| Sbjct: 100 atggcggccatatcttcgcttcccttcgcggcactgcgccgggccgccgactgcaggccg 159 Query: 175 tcgacggcg 183 ||||||||| Sbjct: 160 tcgacggcg 168
>gb|AY224446.1| Oryza sativa (japonica cultivar-group) isolate 23045 inositol phosphatase-like protein mRNA, complete cds Length = 864 Score = 280 bits (141), Expect = 4e-72 Identities = 258/297 (86%) Strand = Plus / Plus Query: 210 cgtcatgctcaacgcgagggctcggcggggctcacgttcggtggtgcgctgcgtcatcac 269 |||| |||||| || |||| | |||||||| || || |||||||||||||||||| ||| Sbjct: 99 cgtcgtgctcagcgtgaggccccggcgggggtcgcgctcggtggtgcgctgcgtcgccac 158 Query: 270 tgccggtgatattccacctactgtggcagatacaaagatgaacttcctgaagtcgtacaa 329 || || ||| ||||||| ||||| ||||| ||||||||||| || || ||||| ||||| Sbjct: 159 ggcgggcgatgttccacccactgtcgcagaaacaaagatgaattttctcaagtcatacaa 218 Query: 330 acgtcctattccaagcatttacagtacagttctacaagaacttttggtgcagcaacatct 389 |||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 219 gcgtcctatcctaagcatttacagtacagttctacaagaacttttggtacagcaacatct 278 Query: 390 gatgagatacaaaagtacgtatcagtatgatcctgtgtttgctcttggatttgtcaccgt 449 |||||||||||||| || ||||| |||||| | |||||||||||||| ||||| ||||| Sbjct: 279 gatgagatacaaaacaacatatcaatatgatgcggtgtttgctcttggttttgtgaccgt 338 Query: 450 ctatgaccagcttatggaagggtaccccagcaacgaggacagggatgccatcttcaa 506 ||||||||| || |||||||||||||| ||||| ||||| |||||||| |||||||| Sbjct: 339 ctatgaccaactcatggaagggtaccctagcaatgaggatagggatgcaatcttcaa 395 Score = 89.7 bits (45), Expect = 8e-15 Identities = 63/69 (91%) Strand = Plus / Plus Query: 115 atggcggccatatcgtcgcttccgttcgctgcactgcgccgagcggccgactggaggccg 174 |||||||||||||| |||||||| ||||| ||||||||||| || |||||||| |||||| Sbjct: 1 atggcggccatatcttcgcttcccttcgcggcactgcgccgggccgccgactgcaggccg 60 Query: 175 tcgacggcg 183 ||||||||| Sbjct: 61 tcgacggcg 69
>dbj|AK064914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M13, full insert sequence Length = 1152 Score = 280 bits (141), Expect = 4e-72 Identities = 258/297 (86%) Strand = Plus / Plus Query: 210 cgtcatgctcaacgcgagggctcggcggggctcacgttcggtggtgcgctgcgtcatcac 269 |||| |||||| || |||| | |||||||| || || |||||||||||||||||| ||| Sbjct: 197 cgtcgtgctcagcgtgaggccccggcgggggtcgcgctcggtggtgcgctgcgtcgccac 256 Query: 270 tgccggtgatattccacctactgtggcagatacaaagatgaacttcctgaagtcgtacaa 329 || || ||| ||||||| ||||| ||||| ||||||||||| || || ||||| ||||| Sbjct: 257 ggcgggcgatgttccacccactgtcgcagaaacaaagatgaattttctcaagtcatacaa 316 Query: 330 acgtcctattccaagcatttacagtacagttctacaagaacttttggtgcagcaacatct 389 |||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 317 gcgtcctatcctaagcatttacagtacagttctacaagaacttttggtacagcaacatct 376 Query: 390 gatgagatacaaaagtacgtatcagtatgatcctgtgtttgctcttggatttgtcaccgt 449 |||||||||||||| || ||||| |||||| | |||||||||||||| ||||| ||||| Sbjct: 377 gatgagatacaaaacaacatatcaatatgatgcggtgtttgctcttggttttgtgaccgt 436 Query: 450 ctatgaccagcttatggaagggtaccccagcaacgaggacagggatgccatcttcaa 506 ||||||||| || |||||||||||||| ||||| ||||| |||||||| |||||||| Sbjct: 437 ctatgaccaactcatggaagggtaccctagcaatgaggatagggatgcaatcttcaa 493 Score = 89.7 bits (45), Expect = 8e-15 Identities = 63/69 (91%) Strand = Plus / Plus Query: 115 atggcggccatatcgtcgcttccgttcgctgcactgcgccgagcggccgactggaggccg 174 |||||||||||||| |||||||| ||||| ||||||||||| || |||||||| |||||| Sbjct: 99 atggcggccatatcttcgcttcccttcgcggcactgcgccgggccgccgactgcaggccg 158 Query: 175 tcgacggcg 183 ||||||||| Sbjct: 159 tcgacggcg 167
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 250 bits (126), Expect = 4e-63 Identities = 201/226 (88%) Strand = Plus / Minus Query: 281 ttccacctactgtggcagatacaaagatgaacttcctgaagtcgtacaaacgtcctattc 340 ||||||| ||||| ||||| ||||||||||| || || ||||| ||||| |||||||| | Sbjct: 22268329 ttccacccactgtcgcagaaacaaagatgaattttctcaagtcatacaagcgtcctatcc 22268270 Query: 341 caagcatttacagtacagttctacaagaacttttggtgcagcaacatctgatgagataca 400 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 22268269 taagcatttacagtacagttctacaagaacttttggtacagcaacatctgatgagataca 22268210 Query: 401 aaagtacgtatcagtatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagc 460 ||| || ||||| |||||| | |||||||||||||| ||||| |||||||||||||| | Sbjct: 22268209 aaacaacatatcaatatgatgcggtgtttgctcttggttttgtgaccgtctatgaccaac 22268150 Query: 461 ttatggaagggtaccccagcaacgaggacagggatgccatcttcaa 506 | |||||||||||||| ||||| ||||| |||||||| |||||||| Sbjct: 22268149 tcatggaagggtaccctagcaatgaggatagggatgcaatcttcaa 22268104 Score = 89.7 bits (45), Expect = 8e-15 Identities = 63/69 (91%) Strand = Plus / Minus Query: 115 atggcggccatatcgtcgcttccgttcgctgcactgcgccgagcggccgactggaggccg 174 |||||||||||||| |||||||| ||||| ||||||||||| || |||||||| |||||| Sbjct: 22269475 atggcggccatatcttcgcttcccttcgcggcactgcgccgggccgccgactgcaggccg 22269416 Query: 175 tcgacggcg 183 ||||||||| Sbjct: 22269415 tcgacggcg 22269407 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Minus Query: 210 cgtcatgctcaacgcgagggctcggcggggctcacgttcggtggtgcgctgcgtc 264 |||| |||||| || |||| | |||||||| || || |||||||||||||||||| Sbjct: 22269377 cgtcgtgctcagcgtgaggccccggcgggggtcgcgctcggtggtgcgctgcgtc 22269323
>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0567H04 Length = 181420 Score = 250 bits (126), Expect = 4e-63 Identities = 201/226 (88%) Strand = Plus / Minus Query: 281 ttccacctactgtggcagatacaaagatgaacttcctgaagtcgtacaaacgtcctattc 340 ||||||| ||||| ||||| ||||||||||| || || ||||| ||||| |||||||| | Sbjct: 73575 ttccacccactgtcgcagaaacaaagatgaattttctcaagtcatacaagcgtcctatcc 73516 Query: 341 caagcatttacagtacagttctacaagaacttttggtgcagcaacatctgatgagataca 400 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 73515 taagcatttacagtacagttctacaagaacttttggtacagcaacatctgatgagataca 73456 Query: 401 aaagtacgtatcagtatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagc 460 ||| || ||||| |||||| | |||||||||||||| ||||| |||||||||||||| | Sbjct: 73455 aaacaacatatcaatatgatgcggtgtttgctcttggttttgtgaccgtctatgaccaac 73396 Query: 461 ttatggaagggtaccccagcaacgaggacagggatgccatcttcaa 506 | |||||||||||||| ||||| ||||| |||||||| |||||||| Sbjct: 73395 tcatggaagggtaccctagcaatgaggatagggatgcaatcttcaa 73350 Score = 89.7 bits (45), Expect = 8e-15 Identities = 63/69 (91%) Strand = Plus / Minus Query: 115 atggcggccatatcgtcgcttccgttcgctgcactgcgccgagcggccgactggaggccg 174 |||||||||||||| |||||||| ||||| ||||||||||| || |||||||| |||||| Sbjct: 74721 atggcggccatatcttcgcttcccttcgcggcactgcgccgggccgccgactgcaggccg 74662 Query: 175 tcgacggcg 183 ||||||||| Sbjct: 74661 tcgacggcg 74653 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Minus Query: 210 cgtcatgctcaacgcgagggctcggcggggctcacgttcggtggtgcgctgcgtc 264 |||| |||||| || |||| | |||||||| || || |||||||||||||||||| Sbjct: 74623 cgtcgtgctcagcgtgaggccccggcgggggtcgcgctcggtggtgcgctgcgtc 74569
>ref|NM_127659.1| Arabidopsis thaliana THF1 AT2G20890 (THF1) mRNA, complete cds Length = 1246 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 415 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 470 ||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 437 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 492
>gb|AC006234.4| Arabidopsis thaliana chromosome 2 clone F5H14 map mi148, complete sequence Length = 129667 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 415 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 470 ||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 43483 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 43428
>gb|AY081596.1| Arabidopsis thaliana unknown protein (At2g20890) mRNA, complete cds Length = 953 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 415 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 470 ||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 322 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 377
>gb|AY062799.1| Arabidopsis thaliana Unknown protein (At2g20890; F5H14.14) mRNA, complete cds Length = 1143 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 415 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 470 ||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 432 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 487
>emb|BX818901.1|CNS0A8Y0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB24ZE08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1114 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 415 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 470 ||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 419 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 474
>emb|BX820020.1|CNS0A8FF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS62ZD04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1131 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 415 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 470 ||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 397 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 452
>gb|AY087394.1| Arabidopsis thaliana clone 34875 mRNA, complete sequence Length = 1246 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 415 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 470 ||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 437 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 492
>gb|AY899908.1| Arabidopsis thaliana chloroplast thylakoid formation 1 (THF1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1245 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 415 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 470 ||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 436 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 491
>gb|AC003694.1|AC003694 Mus musculus chromosome 19, clone CIT282B21, complete sequence Length = 186314 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Minus Query: 486 ggacagggatgccatcttcaagtc 509 |||||||||||||||||||||||| Sbjct: 44823 ggacagggatgccatcttcaagtc 44800
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 36 ccttttgccctcaccggcggtgt 58 ||||||||||||||||||||||| Sbjct: 6142967 ccttttgccctcaccggcggtgt 6142989
>gb|AY190958.1| Drosophila virilis clone DVIF01_45_J10 (D1457) genomic sequence Length = 44255 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 193 gtgagcgtctccggtggcgtca 214 |||||||||||||||||||||| Sbjct: 10405 gtgagcgtctccggtggcgtca 10384
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 112 cccatggcggccatatcgtcgc 133 |||||||||||||||||||||| Sbjct: 2996924 cccatggcggccatatcgtcgc 2996945
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 187 gccgcggtgagcgtctccggtggcg 211 ||||||| ||||||||||||||||| Sbjct: 2649540 gccgcggcgagcgtctccggtggcg 2649516
>emb|BX820185.1|CNS0A8J4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS88ZH01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1158 Score = 42.1 bits (21), Expect = 1.8 Identities = 49/57 (85%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 415 tatgatcctgtgtttgctct-tggatttgtcaccgtctatgaccagcttatggaagg 470 ||||||||||| ||||| | |||||||||||| || ||||| ||||| |||||||| Sbjct: 420 tatgatcctgtttttgccccgtggatttgtcactgtatatgatcagctcatggaagg 476
>dbj|AB089954.1| Micromonospora griseorubida gene cluster for the polyketide macrolide mycinamicin, partial and comeplete cds Length = 58343 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 tcaccggcggtgtcgaccatc 66 ||||||||||||||||||||| Sbjct: 39142 tcaccggcggtgtcgaccatc 39162
>ref|NM_103989.2| Arabidopsis thaliana structural molecule AT1G51110 mRNA, complete cds Length = 1437 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 ccatcttcaagtcatatgta 516 |||||||||||||||||||| Sbjct: 1116 ccatcttcaagtcatatgta 1097
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 cgtcgacggcgactgccgcg 192 |||||||||||||||||||| Sbjct: 948933 cgtcgacggcgactgccgcg 948914
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cgtcgacggcgactgccgcg 192 |||||||||||||||||||| Sbjct: 247276 cgtcgacggcgactgccgcg 247295
>gb|AC140332.3| Mus musculus BAC clone RP23-408K9 from chromosome 19, complete sequence Length = 206515 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 486 ggacagggatgccatcttcaagtc 509 |||||||| ||||||||||||||| Sbjct: 7961 ggacagggctgccatcttcaagtc 7938
>gb|AY254102.1| Streptomyces castaneoglobisporus MelC gene, complete cds Length = 381 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 cgacggcgactgccgcggtgagcg 199 |||||||| ||||||||||||||| Sbjct: 49 cgacggcggctgccgcggtgagcg 26
>emb|BX813641.1|CNS0AC3Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB2ZA12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1271 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 ccatcttcaagtcatatgta 516 |||||||||||||||||||| Sbjct: 1075 ccatcttcaagtcatatgta 1056
>emb|BX814945.1|CNS0ABC0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS1ZF08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1308 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 ccatcttcaagtcatatgta 516 |||||||||||||||||||| Sbjct: 1085 ccatcttcaagtcatatgta 1066
>gb|AC079828.4|AC079828 Arabidopsis thaliana chromosome 1 BAC F23H24 genomic sequence, complete sequence Length = 45337 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 497 ccatcttcaagtcatatgta 516 |||||||||||||||||||| Sbjct: 18104 ccatcttcaagtcatatgta 18123
>gb|BT005347.1| Arabidopsis thaliana At1g51115 mRNA, complete cds Length = 1230 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 ccatcttcaagtcatatgta 516 |||||||||||||||||||| Sbjct: 1084 ccatcttcaagtcatatgta 1065
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 cggcggtgtcgaccatccgc 69 |||||||||||||||||||| Sbjct: 7160641 cggcggtgtcgaccatccgc 7160660
>gb|AY087688.1| Arabidopsis thaliana clone 37689 mRNA, complete sequence Length = 1439 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 ccatcttcaagtcatatgta 516 |||||||||||||||||||| Sbjct: 1117 ccatcttcaagtcatatgta 1098
>dbj|AK118545.1| Arabidopsis thaliana At1g51110 mRNA for unknown protein, complete cds, clone: RAFL19-77-I08 Length = 1333 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 ccatcttcaagtcatatgta 516 |||||||||||||||||||| Sbjct: 1088 ccatcttcaagtcatatgta 1069
>emb|AJ131520.2|TMA131520 Tropaeolum majus mRNA for alpha-D-xylosidase Length = 3151 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 acaaagatgaacttcctgaa 320 |||||||||||||||||||| Sbjct: 2459 acaaagatgaacttcctgaa 2478
>gb|AY262106.1| Newcastle disease virus AF2240 large protein (L) mRNA, complete cds Length = 6615 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 gaggacagggatgccatctt 503 |||||||||||||||||||| Sbjct: 4996 gaggacagggatgccatctt 5015
>gb|AC149086.4| Mus musculus BAC clone RP24-245L1 from 19, complete sequence Length = 185283 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 486 ggacagggatgccatcttcaagtc 509 |||||||| ||||||||||||||| Sbjct: 66251 ggacagggctgccatcttcaagtc 66274
>emb|AL109767.7|CNS018OX Human chromosome 14 DNA sequence BAC R-889B13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 184039 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 ttttggtgcagcaacatctg 390 |||||||||||||||||||| Sbjct: 72474 ttttggtgcagcaacatctg 72493
>emb|AL132819.6|CNS01DTO Human chromosome 14 DNA sequence BAC C-2200A16 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 140073 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 ttttggtgcagcaacatctg 390 |||||||||||||||||||| Sbjct: 97330 ttttggtgcagcaacatctg 97349 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,206,468 Number of Sequences: 3902068 Number of extensions: 3206468 Number of successful extensions: 68094 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67806 Number of HSP's gapped (non-prelim): 287 length of query: 518 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 495 effective length of database: 17,143,297,704 effective search space: 8485932363480 effective search space used: 8485932363480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)