ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2h07 |
|---|---|
| Clone Library Name | barley_pub |
>SUI1_ORYSA (P33278) Protein translation factor SUI1 homolog (GOS2 protein)| Length = 115 Score = 71.6 bits (174), Expect = 5e-13 Identities = 32/38 (84%), Positives = 36/38 (94%) Frame = +1 Query: 139 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQ 252 MSDLD+Q+PTAFDPFAEANA DSGA AGSK+YVHVR+Q Sbjct: 1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQ 38
>SUI1_MAIZE (P56330) Protein translation factor SUI1 homolog (GOS2 protein)| Length = 115 Score = 71.6 bits (174), Expect = 5e-13 Identities = 32/38 (84%), Positives = 36/38 (94%) Frame = +1 Query: 139 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQ 252 MSDLD+Q+PTAFDPFAEANA DSGA AGSK+YVHVR+Q Sbjct: 1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQ 38
>SUI1_SPOST (Q9SM41) Protein translation factor SUI1 homolog| Length = 115 Score = 70.5 bits (171), Expect = 1e-12 Identities = 31/38 (81%), Positives = 36/38 (94%) Frame = +1 Query: 139 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQ 252 MSDLD+Q+PTAFDPF+EANA DSGA AGSK+YVHVR+Q Sbjct: 1 MSDLDIQIPTAFDPFSEANAGDSGAAAGSKDYVHVRIQ 38
>SUI12_ARATH (Q94JV4) Protein translation factor SUI1 homolog 2| Length = 113 Score = 64.3 bits (155), Expect = 8e-11 Identities = 31/38 (81%), Positives = 35/38 (92%) Frame = +1 Query: 139 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQ 252 MSDL+VQVPTAFDPFA+ANAEDS GAG+K YVH+RVQ Sbjct: 1 MSDLEVQVPTAFDPFADANAEDS--GAGTKEYVHIRVQ 36
>SUI1_BRAOL (Q9SQF4) Protein translation factor SUI1 homolog (Translation| initiation factor nps45) Length = 113 Score = 62.0 bits (149), Expect = 4e-10 Identities = 30/38 (78%), Positives = 34/38 (89%) Frame = +1 Query: 139 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQ 252 MS+LD QVPTAFDPFA+ANAEDS GAG+K YVH+RVQ Sbjct: 1 MSELDSQVPTAFDPFADANAEDS--GAGTKEYVHIRVQ 36
>SUI11_ARATH (P41568) Protein translation factor SUI1 homolog 1| Length = 113 Score = 62.0 bits (149), Expect = 4e-10 Identities = 30/38 (78%), Positives = 34/38 (89%) Frame = +1 Query: 139 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQ 252 MS+LD QVPTAFDPFA+ANAEDS GAG+K YVH+RVQ Sbjct: 1 MSELDSQVPTAFDPFADANAEDS--GAGTKEYVHIRVQ 36
>SUI1_SALBA (O48650) Protein translation factor SUI1 homolog| Length = 113 Score = 59.3 bits (142), Expect = 3e-09 Identities = 29/38 (76%), Positives = 33/38 (86%) Frame = +1 Query: 139 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQ 252 MS+ D +PTAFDPFAEANAEDS GAG+K+YVHVRVQ Sbjct: 1 MSEFDNAIPTAFDPFAEANAEDS--GAGTKDYVHVRVQ 36
>SUI1_PIMBR (O82569) Protein translation factor SUI1 homolog| Length = 113 Score = 46.6 bits (109), Expect = 2e-05 Identities = 21/38 (55%), Positives = 27/38 (71%) Frame = +1 Query: 139 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQ 252 M D D+Q+PT+FDPFAEA D A +K YVH+R+Q Sbjct: 1 MVDSDIQIPTSFDPFAEAEITD--ATGSTKEYVHIRIQ 36
>EIF1_PONPY (Q5RFF4) Eukaryotic translation initiation factor 1 (eIF1) (Protein| translation factor SUI1 homolog) Length = 113 Score = 35.4 bits (80), Expect = 0.039 Identities = 13/28 (46%), Positives = 22/28 (78%) Frame = +1 Query: 169 AFDPFAEANAEDSGAGAGSKNYVHVRVQ 252 +FDPFA+A+ D AG+++Y+H+R+Q Sbjct: 9 SFDPFADASKGDDLLPAGTEDYIHIRIQ 36
>EIF1_MOUSE (P48024) Eukaryotic translation initiation factor 1 (eIF1) (Protein| translation factor SUI1 homolog) Length = 113 Score = 35.4 bits (80), Expect = 0.039 Identities = 13/28 (46%), Positives = 22/28 (78%) Frame = +1 Query: 169 AFDPFAEANAEDSGAGAGSKNYVHVRVQ 252 +FDPFA+A+ D AG+++Y+H+R+Q Sbjct: 9 SFDPFADASKGDDLLPAGTEDYIHIRIQ 36
>EIF1_HUMAN (P41567) Eukaryotic translation initiation factor 1 (eIF1) (Protein| translation factor SUI1 homolog) (Sui1iso1) (A121) Length = 113 Score = 35.4 bits (80), Expect = 0.039 Identities = 13/28 (46%), Positives = 22/28 (78%) Frame = +1 Query: 169 AFDPFAEANAEDSGAGAGSKNYVHVRVQ 252 +FDPFA+A+ D AG+++Y+H+R+Q Sbjct: 9 SFDPFADASKGDDLLPAGTEDYIHIRIQ 36
>EIF1_BOVIN (Q5E938) Eukaryotic translation initiation factor 1 (eIF1) (Protein| translation factor SUI1 homolog) Length = 113 Score = 35.4 bits (80), Expect = 0.039 Identities = 13/28 (46%), Positives = 22/28 (78%) Frame = +1 Query: 169 AFDPFAEANAEDSGAGAGSKNYVHVRVQ 252 +FDPFA+A+ D AG+++Y+H+R+Q Sbjct: 9 SFDPFADASKGDDLLPAGTEDYIHIRIQ 36
>EIF1B_PIG (P61220) Eukaryotic translation initiation factor 1b (eIF1b)| (Protein translation factor SUI1 homolog GC20) Length = 113 Score = 35.4 bits (80), Expect = 0.039 Identities = 14/33 (42%), Positives = 23/33 (69%) Frame = +1 Query: 154 VQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQ 252 +Q +FDPFA+A D AG+++Y+H+R+Q Sbjct: 4 IQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQ 36
>EIF1B_MOUSE (Q9CXU9) Eukaryotic translation initiation factor 1b (eIF1b)| Length = 113 Score = 35.4 bits (80), Expect = 0.039 Identities = 14/33 (42%), Positives = 23/33 (69%) Frame = +1 Query: 154 VQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQ 252 +Q +FDPFA+A D AG+++Y+H+R+Q Sbjct: 4 IQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQ 36
>EIF1B_MACFA (Q4R4X9) Eukaryotic translation initiation factor 1b (eIF1b)| Length = 113 Score = 35.4 bits (80), Expect = 0.039 Identities = 14/33 (42%), Positives = 23/33 (69%) Frame = +1 Query: 154 VQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQ 252 +Q +FDPFA+A D AG+++Y+H+R+Q Sbjct: 4 IQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQ 36
>EIF1B_HUMAN (O60739) Eukaryotic translation initiation factor 1b (eIF1b)| (Protein translation factor SUI1 homolog GC20) Length = 113 Score = 35.4 bits (80), Expect = 0.039 Identities = 14/33 (42%), Positives = 23/33 (69%) Frame = +1 Query: 154 VQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQ 252 +Q +FDPFA+A D AG+++Y+H+R+Q Sbjct: 4 IQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQ 36
>SUI1_ASHGO (Q755R1) Protein translation factor SUI1| Length = 108 Score = 30.4 bits (67), Expect = 1.3 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +1 Query: 169 AFDPFAEANAEDSGAGAGSKNYVHVRVQ 252 +FDPFA+ ++ A S NY+H+R+Q Sbjct: 8 SFDPFADTGDDE----ASSSNYIHIRIQ 31
>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)| Length = 1518 Score = 30.0 bits (66), Expect = 1.6 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -2 Query: 253 AGHAHAHSSLIQHQRRSPQHLPQQTDQKQLEPGRRDQ 143 AG +H Q Q++SP H PQQ Q+Q + ++ Q Sbjct: 737 AGQSHGQHP--QQQQQSPHHQPQQQQQQQQQQSQQQQ 771
>BAR3_CHITE (Q03376) Balbiani ring protein 3 precursor| Length = 1700 Score = 28.9 bits (63), Expect = 3.6 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +3 Query: 189 GKC*GLRRWCWIKELCACACPA 254 GKC G + WC + C C CPA Sbjct: 1372 GKCTGAQVWC--SKACKCVCPA 1391
>ARSD_HUMAN (P51689) Arylsulfatase D precursor (EC 3.1.6.-) (ASD)| Length = 593 Score = 28.5 bits (62), Expect = 4.8 Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%) Frame = -3 Query: 114 PQTDDALFIVL-MCELVRWCEPRTANA 37 P D+L ++L +C L++ CEP+TANA Sbjct: 12 PAARDSLPVLLFLCLLLKTCEPKTANA 38
>SUI1_YEAST (P32911) Protein translation factor SUI1| Length = 108 Score = 28.1 bits (61), Expect = 6.2 Identities = 10/28 (35%), Positives = 19/28 (67%) Frame = +1 Query: 169 AFDPFAEANAEDSGAGAGSKNYVHVRVQ 252 +FDPFA+ +++ + NY+H+R+Q Sbjct: 8 SFDPFADTGDDETA----TSNYIHIRIQ 31
>CAUP_DROME (P54269) Homeobox protein caupolican| Length = 693 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -2 Query: 247 HAHAHSSLIQHQRRSPQHLPQQTDQKQLEPGRRDQ 143 H H H +QH ++ Q QQ +Q+QL+ + DQ Sbjct: 393 HTHPHPQQMQHHQQQQQ---QQQNQQQLQHHQMDQ 424 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,323,086 Number of Sequences: 219361 Number of extensions: 513891 Number of successful extensions: 1668 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 1579 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1658 length of database: 80,573,946 effective HSP length: 60 effective length of database: 67,412,286 effective search space used: 1617894864 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
