ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SUI1_ORYSA (P33278) Protein translation factor SUI1 homolog (GOS... 72 5e-13
2SUI1_MAIZE (P56330) Protein translation factor SUI1 homolog (GOS... 72 5e-13
3SUI1_SPOST (Q9SM41) Protein translation factor SUI1 homolog 70 1e-12
4SUI12_ARATH (Q94JV4) Protein translation factor SUI1 homolog 2 64 8e-11
5SUI1_BRAOL (Q9SQF4) Protein translation factor SUI1 homolog (Tra... 62 4e-10
6SUI11_ARATH (P41568) Protein translation factor SUI1 homolog 1 62 4e-10
7SUI1_SALBA (O48650) Protein translation factor SUI1 homolog 59 3e-09
8SUI1_PIMBR (O82569) Protein translation factor SUI1 homolog 47 2e-05
9EIF1_PONPY (Q5RFF4) Eukaryotic translation initiation factor 1 (... 35 0.039
10EIF1_MOUSE (P48024) Eukaryotic translation initiation factor 1 (... 35 0.039
11EIF1_HUMAN (P41567) Eukaryotic translation initiation factor 1 (... 35 0.039
12EIF1_BOVIN (Q5E938) Eukaryotic translation initiation factor 1 (... 35 0.039
13EIF1B_PIG (P61220) Eukaryotic translation initiation factor 1b (... 35 0.039
14EIF1B_MOUSE (Q9CXU9) Eukaryotic translation initiation factor 1b... 35 0.039
15EIF1B_MACFA (Q4R4X9) Eukaryotic translation initiation factor 1b... 35 0.039
16EIF1B_HUMAN (O60739) Eukaryotic translation initiation factor 1b... 35 0.039
17SUI1_ASHGO (Q755R1) Protein translation factor SUI1 30 1.3
18HR4_DROME (Q9W539) Hormone receptor 4 (dHR4) 30 1.6
19BAR3_CHITE (Q03376) Balbiani ring protein 3 precursor 29 3.6
20ARSD_HUMAN (P51689) Arylsulfatase D precursor (EC 3.1.6.-) (ASD) 28 4.8
21SUI1_YEAST (P32911) Protein translation factor SUI1 28 6.2
22CAUP_DROME (P54269) Homeobox protein caupolican 28 8.1

>SUI1_ORYSA (P33278) Protein translation factor SUI1 homolog (GOS2 protein)|
          Length = 115

 Score = 71.6 bits (174), Expect = 5e-13
 Identities = 32/38 (84%), Positives = 36/38 (94%)
 Frame = +1

Query: 139 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQ 252
           MSDLD+Q+PTAFDPFAEANA DSGA AGSK+YVHVR+Q
Sbjct: 1   MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQ 38



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>SUI1_MAIZE (P56330) Protein translation factor SUI1 homolog (GOS2 protein)|
          Length = 115

 Score = 71.6 bits (174), Expect = 5e-13
 Identities = 32/38 (84%), Positives = 36/38 (94%)
 Frame = +1

Query: 139 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQ 252
           MSDLD+Q+PTAFDPFAEANA DSGA AGSK+YVHVR+Q
Sbjct: 1   MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQ 38



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>SUI1_SPOST (Q9SM41) Protein translation factor SUI1 homolog|
          Length = 115

 Score = 70.5 bits (171), Expect = 1e-12
 Identities = 31/38 (81%), Positives = 36/38 (94%)
 Frame = +1

Query: 139 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQ 252
           MSDLD+Q+PTAFDPF+EANA DSGA AGSK+YVHVR+Q
Sbjct: 1   MSDLDIQIPTAFDPFSEANAGDSGAAAGSKDYVHVRIQ 38



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>SUI12_ARATH (Q94JV4) Protein translation factor SUI1 homolog 2|
          Length = 113

 Score = 64.3 bits (155), Expect = 8e-11
 Identities = 31/38 (81%), Positives = 35/38 (92%)
 Frame = +1

Query: 139 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQ 252
           MSDL+VQVPTAFDPFA+ANAEDS  GAG+K YVH+RVQ
Sbjct: 1   MSDLEVQVPTAFDPFADANAEDS--GAGTKEYVHIRVQ 36



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>SUI1_BRAOL (Q9SQF4) Protein translation factor SUI1 homolog (Translation|
           initiation factor nps45)
          Length = 113

 Score = 62.0 bits (149), Expect = 4e-10
 Identities = 30/38 (78%), Positives = 34/38 (89%)
 Frame = +1

Query: 139 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQ 252
           MS+LD QVPTAFDPFA+ANAEDS  GAG+K YVH+RVQ
Sbjct: 1   MSELDSQVPTAFDPFADANAEDS--GAGTKEYVHIRVQ 36



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>SUI11_ARATH (P41568) Protein translation factor SUI1 homolog 1|
          Length = 113

 Score = 62.0 bits (149), Expect = 4e-10
 Identities = 30/38 (78%), Positives = 34/38 (89%)
 Frame = +1

Query: 139 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQ 252
           MS+LD QVPTAFDPFA+ANAEDS  GAG+K YVH+RVQ
Sbjct: 1   MSELDSQVPTAFDPFADANAEDS--GAGTKEYVHIRVQ 36



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>SUI1_SALBA (O48650) Protein translation factor SUI1 homolog|
          Length = 113

 Score = 59.3 bits (142), Expect = 3e-09
 Identities = 29/38 (76%), Positives = 33/38 (86%)
 Frame = +1

Query: 139 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQ 252
           MS+ D  +PTAFDPFAEANAEDS  GAG+K+YVHVRVQ
Sbjct: 1   MSEFDNAIPTAFDPFAEANAEDS--GAGTKDYVHVRVQ 36



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>SUI1_PIMBR (O82569) Protein translation factor SUI1 homolog|
          Length = 113

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 21/38 (55%), Positives = 27/38 (71%)
 Frame = +1

Query: 139 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQ 252
           M D D+Q+PT+FDPFAEA   D  A   +K YVH+R+Q
Sbjct: 1   MVDSDIQIPTSFDPFAEAEITD--ATGSTKEYVHIRIQ 36



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>EIF1_PONPY (Q5RFF4) Eukaryotic translation initiation factor 1 (eIF1) (Protein|
           translation factor SUI1 homolog)
          Length = 113

 Score = 35.4 bits (80), Expect = 0.039
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = +1

Query: 169 AFDPFAEANAEDSGAGAGSKNYVHVRVQ 252
           +FDPFA+A+  D    AG+++Y+H+R+Q
Sbjct: 9   SFDPFADASKGDDLLPAGTEDYIHIRIQ 36



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>EIF1_MOUSE (P48024) Eukaryotic translation initiation factor 1 (eIF1) (Protein|
           translation factor SUI1 homolog)
          Length = 113

 Score = 35.4 bits (80), Expect = 0.039
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = +1

Query: 169 AFDPFAEANAEDSGAGAGSKNYVHVRVQ 252
           +FDPFA+A+  D    AG+++Y+H+R+Q
Sbjct: 9   SFDPFADASKGDDLLPAGTEDYIHIRIQ 36



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>EIF1_HUMAN (P41567) Eukaryotic translation initiation factor 1 (eIF1) (Protein|
           translation factor SUI1 homolog) (Sui1iso1) (A121)
          Length = 113

 Score = 35.4 bits (80), Expect = 0.039
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = +1

Query: 169 AFDPFAEANAEDSGAGAGSKNYVHVRVQ 252
           +FDPFA+A+  D    AG+++Y+H+R+Q
Sbjct: 9   SFDPFADASKGDDLLPAGTEDYIHIRIQ 36



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>EIF1_BOVIN (Q5E938) Eukaryotic translation initiation factor 1 (eIF1) (Protein|
           translation factor SUI1 homolog)
          Length = 113

 Score = 35.4 bits (80), Expect = 0.039
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = +1

Query: 169 AFDPFAEANAEDSGAGAGSKNYVHVRVQ 252
           +FDPFA+A+  D    AG+++Y+H+R+Q
Sbjct: 9   SFDPFADASKGDDLLPAGTEDYIHIRIQ 36



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>EIF1B_PIG (P61220) Eukaryotic translation initiation factor 1b (eIF1b)|
           (Protein translation factor SUI1 homolog GC20)
          Length = 113

 Score = 35.4 bits (80), Expect = 0.039
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +1

Query: 154 VQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQ 252
           +Q   +FDPFA+A   D    AG+++Y+H+R+Q
Sbjct: 4   IQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQ 36



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>EIF1B_MOUSE (Q9CXU9) Eukaryotic translation initiation factor 1b (eIF1b)|
          Length = 113

 Score = 35.4 bits (80), Expect = 0.039
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +1

Query: 154 VQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQ 252
           +Q   +FDPFA+A   D    AG+++Y+H+R+Q
Sbjct: 4   IQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQ 36



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>EIF1B_MACFA (Q4R4X9) Eukaryotic translation initiation factor 1b (eIF1b)|
          Length = 113

 Score = 35.4 bits (80), Expect = 0.039
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +1

Query: 154 VQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQ 252
           +Q   +FDPFA+A   D    AG+++Y+H+R+Q
Sbjct: 4   IQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQ 36



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>EIF1B_HUMAN (O60739) Eukaryotic translation initiation factor 1b (eIF1b)|
           (Protein translation factor SUI1 homolog GC20)
          Length = 113

 Score = 35.4 bits (80), Expect = 0.039
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +1

Query: 154 VQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQ 252
           +Q   +FDPFA+A   D    AG+++Y+H+R+Q
Sbjct: 4   IQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQ 36



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>SUI1_ASHGO (Q755R1) Protein translation factor SUI1|
          Length = 108

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 169 AFDPFAEANAEDSGAGAGSKNYVHVRVQ 252
           +FDPFA+   ++    A S NY+H+R+Q
Sbjct: 8   SFDPFADTGDDE----ASSSNYIHIRIQ 31



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>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)|
          Length = 1518

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 253 AGHAHAHSSLIQHQRRSPQHLPQQTDQKQLEPGRRDQ 143
           AG +H      Q Q++SP H PQQ  Q+Q +  ++ Q
Sbjct: 737 AGQSHGQHP--QQQQQSPHHQPQQQQQQQQQQSQQQQ 771



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>BAR3_CHITE (Q03376) Balbiani ring protein 3 precursor|
          Length = 1700

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 189  GKC*GLRRWCWIKELCACACPA 254
            GKC G + WC   + C C CPA
Sbjct: 1372 GKCTGAQVWC--SKACKCVCPA 1391



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>ARSD_HUMAN (P51689) Arylsulfatase D precursor (EC 3.1.6.-) (ASD)|
          Length = 593

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -3

Query: 114 PQTDDALFIVL-MCELVRWCEPRTANA 37
           P   D+L ++L +C L++ CEP+TANA
Sbjct: 12  PAARDSLPVLLFLCLLLKTCEPKTANA 38



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>SUI1_YEAST (P32911) Protein translation factor SUI1|
          Length = 108

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 169 AFDPFAEANAEDSGAGAGSKNYVHVRVQ 252
           +FDPFA+   +++     + NY+H+R+Q
Sbjct: 8   SFDPFADTGDDETA----TSNYIHIRIQ 31



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>CAUP_DROME (P54269) Homeobox protein caupolican|
          Length = 693

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 247 HAHAHSSLIQHQRRSPQHLPQQTDQKQLEPGRRDQ 143
           H H H   +QH ++  Q   QQ +Q+QL+  + DQ
Sbjct: 393 HTHPHPQQMQHHQQQQQ---QQQNQQQLQHHQMDQ 424


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,323,086
Number of Sequences: 219361
Number of extensions: 513891
Number of successful extensions: 1668
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1658
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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