ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2h07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY108531.1| Zea mays PCO112988 mRNA sequence Length = 792 Score = 165 bits (83), Expect = 8e-38 Identities = 104/111 (93%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 |||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| Sbjct: 170 ttcatgtctgatctcgacgtccagcttccatctgcttttgatccgtttgcagaggcaaat 229 Query: 196 gctgaggactccggcgctggtgctggatcaaagaactatgtgcatgtgcgt 246 |||||||||||| | |||||||||||||||||| |||||||||| |||||| Sbjct: 230 gctgaggactccagtgctggtgctggatcaaaggactatgtgcacgtgcgt 280
>dbj|AK070301.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049M22, full insert sequence Length = 1410 Score = 141 bits (71), Expect = 1e-30 Identities = 107/119 (89%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 |||||||||||||||||||| ||| ||||| |||| || ||||||||||||||||||||| Sbjct: 835 ttcatgtctgatctcgacgttcagcttccatctgccttcgatccgtttgctgaggcaaat 894 Query: 196 gctgaggactccggcgctggtgctggatcaaagaactatgtgcatgtgcgtgtccagca 254 |||||||||||||||||||| ||||| ||||| | |||||||||||||| ||||||| Sbjct: 895 gctgaggactccggcgctggccctggagcaaaggattatgtgcatgtgcgcatccagca 953
>gb|AY104121.1| Zea mays PCO141133 mRNA sequence Length = 815 Score = 141 bits (71), Expect = 1e-30 Identities = 107/119 (89%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 |||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||| Sbjct: 163 ttcatgtctgatctcgacgtccagcttccatctgcctttgatccgtttgctgaggcaaat 222 Query: 196 gctgaggactccggcgctggtgctggatcaaagaactatgtgcatgtgcgtgtccagca 254 ||||||||||| || |||||| ||||| | ||| | |||||||||||||| ||||||| Sbjct: 223 gctgaggactctggtgctggtcctggaacgaaggattatgtgcatgtgcgcatccagca 281
>ref|XM_475493.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 348 Score = 135 bits (68), Expect = 7e-29 Identities = 104/116 (89%) Strand = Plus / Plus Query: 139 atgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaatgct 198 ||||||||||||||||| ||| ||||| |||| || |||||||||||||||||||||||| Sbjct: 1 atgtctgatctcgacgttcagcttccatctgccttcgatccgtttgctgaggcaaatgct 60 Query: 199 gaggactccggcgctggtgctggatcaaagaactatgtgcatgtgcgtgtccagca 254 ||||||||||||||||| ||||| ||||| | |||||||||||||| ||||||| Sbjct: 61 gaggactccggcgctggccctggagcaaaggattatgtgcatgtgcgcatccagca 116
>dbj|AK058219.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-F05, full insert sequence Length = 731 Score = 135 bits (68), Expect = 7e-29 Identities = 98/108 (90%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 |||||||||||||||||||| ||| ||||| |||| || ||||||||||||||||||||| Sbjct: 156 ttcatgtctgatctcgacgttcagcttccatctgccttcgatccgtttgctgaggcaaat 215 Query: 196 gctgaggactccggcgctggtgctggatcaaagaactatgtgcatgtg 243 |||||||||||||||||||| ||||| ||||| | |||||||||||| Sbjct: 216 gctgaggactccggcgctggccctggagcaaaggattatgtgcatgtg 263
>ref|NM_190883.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 360 Score = 125 bits (63), Expect = 7e-26 Identities = 96/107 (89%) Strand = Plus / Plus Query: 139 atgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaatgct 198 ||||||||||||||||||||| ||||| | ||||||||||||||||| || || |||||| Sbjct: 1 atgtctgatctcgacgtccagcttccatcagcttttgatccgtttgcggaagccaatgct 60 Query: 199 gaggactccggcgctggtgctggatcaaagaactatgtgcatgtgcg 245 ||||||||| ||| |||||||||||||||| ||||||| || ||||| Sbjct: 61 gaggactccagcgttggtgctggatcaaaggactatgtacacgtgcg 107
>gb|AC130605.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0010D04, complete sequence Length = 122599 Score = 103 bits (52), Expect = 3e-19 Identities = 73/80 (91%) Strand = Plus / Plus Query: 175 gatccgtttgctgaggcaaatgctgaggactccggcgctggtgctggatcaaagaactat 234 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | ||| Sbjct: 79741 gatccgtttgctgaggcaaatgctgaggactccggcgctggccctggagcaaaggattat 79800 Query: 235 gtgcatgtgcgtgtccagca 254 ||||||||||| ||||||| Sbjct: 79801 gtgcatgtgcgcatccagca 79820 Score = 46.1 bits (23), Expect = 0.053 Identities = 32/35 (91%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgc 170 |||||||||||||||||||| ||| ||||| |||| Sbjct: 79378 ttcatgtctgatctcgacgttcagcttccatctgc 79412
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 103 bits (52), Expect = 3e-19 Identities = 73/80 (91%) Strand = Plus / Plus Query: 175 gatccgtttgctgaggcaaatgctgaggactccggcgctggtgctggatcaaagaactat 234 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | ||| Sbjct: 24393951 gatccgtttgctgaggcaaatgctgaggactccggcgctggccctggagcaaaggattat 24394010 Query: 235 gtgcatgtgcgtgtccagca 254 ||||||||||| ||||||| Sbjct: 24394011 gtgcatgtgcgcatccagca 24394030 Score = 52.0 bits (26), Expect = 9e-04 Identities = 47/54 (87%) Strand = Plus / Minus Query: 191 caaatgctgaggactccggcgctggtgctggatcaaagaactatgtgcatgtgc 244 ||||||||||||||||| | | | ||| || ||||||| ||||||||||||||| Sbjct: 19105699 caaatgctgaggactccagtgtttgtgttgcatcaaaggactatgtgcatgtgc 19105646 Score = 46.1 bits (23), Expect = 0.053 Identities = 32/35 (91%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgc 170 |||||||||||||||||||| ||| ||||| |||| Sbjct: 24393588 ttcatgtctgatctcgacgttcagcttccatctgc 24393622
>gb|BT013323.1| Lycopersicon esculentum clone 135043R, mRNA sequence Length = 787 Score = 89.7 bits (45), Expect = 4e-15 Identities = 60/65 (92%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 |||||||||||||||||| |||| ||||| ||||||||||||| ||||||||||||||| Sbjct: 167 ttcatgtctgatctcgacctccaagttcccgctgcttttgatccctttgctgaggcaaat 226 Query: 196 gctga 200 ||||| Sbjct: 227 gctga 231
>gb|BT013262.1| Lycopersicon esculentum clone 134804F, mRNA sequence Length = 1343 Score = 89.7 bits (45), Expect = 4e-15 Identities = 60/65 (92%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 ||||||||||||||||||||||| |||| || ||||||||||| ||||||||||||||| Sbjct: 770 ttcatgtctgatctcgacgtccaaattcctaccgcttttgatccctttgctgaggcaaat 829 Query: 196 gctga 200 ||||| Sbjct: 830 gctga 834
>gb|DQ222518.1| Solanum tuberosum clone 120A06 unknown mRNA Length = 699 Score = 81.8 bits (41), Expect = 1e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 |||||||||||||||||| |||| ||| || ||||||||||||||||||||||||||| Sbjct: 143 ttcatgtctgatctcgacatccaaattcgtaccgcttttgatccgtttgctgaggcaaat 202 Query: 196 gctga 200 ||||| Sbjct: 203 gctga 207
>gb|AY365040.1| Zea mays translation initiation factor-like gene, partial sequence Length = 656 Score = 79.8 bits (40), Expect = 4e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 175 gatccgtttgctgaggcaaatgctgaggactccggcgctggtgctggatcaaagaactat 234 |||||||||||||||||||||||||||| ||| || |||||| ||||| | ||| | ||| Sbjct: 337 gatccgtttgctgaggcaaatgctgagggctctggtgctggtcctggaacgaaggattat 396 Query: 235 gtgcatgtgcgtgtccagca 254 ||||||||||| ||||||| Sbjct: 397 gtgcatgtgcgcatccagca 416 Score = 40.1 bits (20), Expect = 3.3 Identities = 36/40 (90%), Gaps = 1/40 (2%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttg 175 ||||||||| |||||||||||||| ||||| |||| |||| Sbjct: 110 ttcatgtct-atctcgacgtccagcttccatctgcctttg 148
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 77.8 bits (39), Expect = 2e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 175 gatccgtttgctgaggcaaatgctgaggactccggcgctggtgctggatcaaagaactat 234 ||||||||||| || || ||||||||||||||| ||| |||||||||||||||| ||||| Sbjct: 33645127 gatccgtttgcggaagccaatgctgaggactccagcgttggtgctggatcaaaggactat 33645068 Query: 235 gtgcatgtgcg 245 || || ||||| Sbjct: 33645067 gtacacgtgcg 33645057 Score = 56.0 bits (28), Expect = 6e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttg 175 |||||||||||||||||||||||| ||||| | ||||||| Sbjct: 33645475 ttcatgtctgatctcgacgtccagcttccatcagcttttg 33645436
>dbj|AP003290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0684C02 Length = 80086 Score = 77.8 bits (39), Expect = 2e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 175 gatccgtttgctgaggcaaatgctgaggactccggcgctggtgctggatcaaagaactat 234 ||||||||||| || || ||||||||||||||| ||| |||||||||||||||| ||||| Sbjct: 59999 gatccgtttgcggaagccaatgctgaggactccagcgttggtgctggatcaaaggactat 59940 Query: 235 gtgcatgtgcg 245 || || ||||| Sbjct: 59939 gtacacgtgcg 59929 Score = 56.0 bits (28), Expect = 6e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttg 175 |||||||||||||||||||||||| ||||| | ||||||| Sbjct: 60347 ttcatgtctgatctcgacgtccagcttccatcagcttttg 60308
>ref|NM_104307.3| Arabidopsis thaliana translation initiation factor AT1G54290 mRNA, complete cds Length = 811 Score = 71.9 bits (36), Expect = 9e-10 Identities = 63/72 (87%) Strand = Plus / Plus Query: 135 gttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaa 194 ||||||||||||||| || || || || || ||||| ||||||||||| ||||| ||||| Sbjct: 241 gttcatgtctgatcttgaagttcaagtccccactgcctttgatccgttcgctgatgcaaa 300 Query: 195 tgctgaggactc 206 |||||||||||| Sbjct: 301 tgctgaggactc 312
>gb|AF372910.1|AF372910 Arabidopsis thaliana At1g54290/F20D21_53 mRNA, complete cds Length = 742 Score = 71.9 bits (36), Expect = 9e-10 Identities = 63/72 (87%) Strand = Plus / Plus Query: 135 gttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaa 194 ||||||||||||||| || || || || || ||||| ||||||||||| ||||| ||||| Sbjct: 179 gttcatgtctgatcttgaagttcaagtccccactgcctttgatccgttcgctgatgcaaa 238 Query: 195 tgctgaggactc 206 |||||||||||| Sbjct: 239 tgctgaggactc 250
>emb|BX817291.1|CNS0ACKO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL12ZC05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 748 Score = 71.9 bits (36), Expect = 9e-10 Identities = 63/72 (87%) Strand = Plus / Plus Query: 135 gttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaa 194 ||||||||||||||| || || || || || ||||| ||||||||||| ||||| ||||| Sbjct: 178 gttcatgtctgatcttgaagttcaagtccccactgcctttgatccgttcgctgatgcaaa 237 Query: 195 tgctgaggactc 206 |||||||||||| Sbjct: 238 tgctgaggactc 249
>ref|NM_124857.2| Arabidopsis thaliana translation initiation factor AT5G54760 mRNA, complete cds Length = 706 Score = 69.9 bits (35), Expect = 4e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 ||||||||||| || ||| ||||||||| ||||| ||||||||||||||||| || ||| Sbjct: 144 ttcatgtctgaacttgactcccaggttcccactgcctttgatccgtttgctgatgcgaat 203 Query: 196 gctgaggactc 206 | ||||||||| Sbjct: 204 gttgaggactc 214
>emb|AJ242801.1|SST242801 Sporobolus stapfianus partial mRNA for putative translation initiation factor eIF-1 Length = 796 Score = 69.9 bits (35), Expect = 4e-09 Identities = 98/119 (82%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 |||||||||||||| ||| | ||| | |||||||| || ||||| ||| ||||||| ||| Sbjct: 165 ttcatgtctgatcttgacattcagatcccaactgccttcgatcccttttctgaggccaat 224 Query: 196 gctgaggactccggcgctggtgctggatcaaagaactatgtgcatgtgcgtgtccagca 254 |||| |||||| || || | ||| ||||||||| |||| || |||||||| ||||||| Sbjct: 225 gctggggactctggtgcggctgcaggatcaaaggactacgttcatgtgcgcatccagca 283
>gb|DQ083225.1| Oryza sativa (indica cultivar-group) clone 5B11G73 mRNA sequence Length = 268 Score = 69.9 bits (35), Expect = 4e-09 Identities = 89/107 (83%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 |||||||||||||||||| | ||| | |||||||| || ||||| ||||||||||| ||| Sbjct: 162 ttcatgtctgatctcgacattcagatcccaactgccttcgatccctttgctgaggccaat 221 Query: 196 gctgaggactccggcgctggtgctggatcaaagaactatgtgcatgt 242 |||| ||||| || || | ||| ||||||||| |||| || ||||| Sbjct: 222 gctggagactctggtgcggctgcaggatcaaaggactacgttcatgt 268
>gb|DQ083224.1| Oryza sativa (indica cultivar-group) clone 5B11F72 mRNA sequence Length = 358 Score = 69.9 bits (35), Expect = 4e-09 Identities = 89/107 (83%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 |||||||||||||||||| | ||| | |||||||| || ||||| ||||||||||| ||| Sbjct: 141 ttcatgtctgatctcgacattcagatcccaactgccttcgatccctttgctgaggccaat 200 Query: 196 gctgaggactccggcgctggtgctggatcaaagaactatgtgcatgt 242 |||| ||||| || || | ||| ||||||||| |||| || ||||| Sbjct: 201 gctggagactctggtgcggctgcaggatcaaaggactacgttcatgt 247
>gb|AF380357.1|AF380357 Porteresia coarctata translational initiation factor eIF1 mRNA, complete cds Length = 773 Score = 69.9 bits (35), Expect = 4e-09 Identities = 89/107 (83%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 |||||||||||||||||| | ||| | |||||||| || ||||| ||||||||||| ||| Sbjct: 153 ttcatgtctgatctcgacattcagatcccaactgccttcgatccctttgctgaggccaat 212 Query: 196 gctgaggactccggcgctggtgctggatcaaagaactatgtgcatgt 242 |||| ||||| || || | ||| ||||||||| |||| || ||||| Sbjct: 213 gctggagactctggtgcggctgcaggatcaaaggactacgttcatgt 259
>dbj|AK120697.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170I05, full insert sequence Length = 752 Score = 69.9 bits (35), Expect = 4e-09 Identities = 89/107 (83%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 |||||||||||||||||| | ||| | |||||||| || ||||| ||||||||||| ||| Sbjct: 176 ttcatgtctgatctcgacattcagatcccaactgccttcgatccctttgctgaggccaat 235 Query: 196 gctgaggactccggcgctggtgctggatcaaagaactatgtgcatgt 242 |||| ||||| || || | ||| ||||||||| |||| || ||||| Sbjct: 236 gctggagactctggtgcggctgcaggatcaaaggactacgttcatgt 282
>dbj|AK105037.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C07, full insert sequence Length = 1275 Score = 69.9 bits (35), Expect = 4e-09 Identities = 89/107 (83%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 |||||||||||||||||| | ||| | |||||||| || ||||| ||||||||||| ||| Sbjct: 699 ttcatgtctgatctcgacattcagatcccaactgccttcgatccctttgctgaggccaat 758 Query: 196 gctgaggactccggcgctggtgctggatcaaagaactatgtgcatgt 242 |||| ||||| || || | ||| ||||||||| |||| || ||||| Sbjct: 759 gctggagactctggtgcggctgcaggatcaaaggactacgttcatgt 805
>gb|AF094774.1|AF094774 Oryza sativa translation initiation factor (GOS2) mRNA, complete cds Length = 744 Score = 69.9 bits (35), Expect = 4e-09 Identities = 89/107 (83%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 |||||||||||||||||| | ||| | |||||||| || ||||| ||||||||||| ||| Sbjct: 156 ttcatgtctgatctcgacattcagatcccaactgccttcgatccctttgctgaggccaat 215 Query: 196 gctgaggactccggcgctggtgctggatcaaagaactatgtgcatgt 242 |||| ||||| || || | ||| ||||||||| |||| || ||||| Sbjct: 216 gctggagactctggtgcggctgcaggatcaaaggactacgttcatgt 262
>dbj|AB003378.1| Salix bakko mRNA for SUI1 homolog, complete cds Length = 700 Score = 69.9 bits (35), Expect = 4e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 161 ttccaactgcttttgatccgtttgctgaggcaaatgctgaggactccggcgctgg 215 ||||||||||||| ||||| || ||||||||||||||||||||||| || ||||| Sbjct: 161 ttccaactgctttcgatcccttcgctgaggcaaatgctgaggactctggtgctgg 215
>ref|XM_478516.1| Oryza sativa (japonica cultivar-group), mRNA Length = 348 Score = 63.9 bits (32), Expect = 2e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 139 atgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaatgct 198 ||||||||||||||| | ||| | |||||||| || ||||| ||||||||||| |||||| Sbjct: 1 atgtctgatctcgacattcagatcccaactgccttcgatccctttgctgaggccaatgct 60 Query: 199 gaggactccggcgctggtgctggatcaaagaactatgtgcatgt 242 | ||||| || || | ||| ||||||||| |||| || ||||| Sbjct: 61 ggagactctggtgcggctgcaggatcaaaggactacgttcatgt 104
>gb|BT000649.1| Arabidopsis thaliana putative protein translation factor Sui1 homolog (At1g54290/F20D21_53) mRNA, complete cds Length = 342 Score = 63.9 bits (32), Expect = 2e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 139 atgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaatgct 198 ||||||||||| || || || || || ||||| ||||||||||| ||||| ||||||||| Sbjct: 1 atgtctgatcttgaagttcaagtccccactgcctttgatccgttcgctgatgcaaatgct 60 Query: 199 gaggactc 206 |||||||| Sbjct: 61 gaggactc 68
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 63.9 bits (32), Expect = 2e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 176 atccgtttgctgaggcaaatgctgaggactccggcgctggtgctggatcaaagaactatg 235 ||||||||| || |||||||||||||||||| | | |||||||||||||||| | |||| Sbjct: 10475958 atccgtttgtggaagcaaatgctgaggactccagtgttggtgctggatcaaaggaatatg 10476017 Query: 236 tgca 239 |||| Sbjct: 10476018 tgca 10476021 Score = 40.1 bits (20), Expect = 3.3 Identities = 56/68 (82%) Strand = Plus / Minus Query: 175 gatccgtttgctgaggcaaatgctgaggactccggcgctggtgctggatcaaagaactat 234 ||||| ||||||||||| ||||||| ||||| || || | ||| ||||||||| |||| Sbjct: 20680391 gatccctttgctgaggccaatgctggagactctggtgcggctgcaggatcaaaggactac 20680332 Query: 235 gtgcatgt 242 || ||||| Sbjct: 20680331 gttcatgt 20680324
>gb|BT005836.1| Arabidopsis thaliana At5g54760 gene, complete cds Length = 342 Score = 63.9 bits (32), Expect = 2e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 139 atgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaatgct 198 |||||||| || ||| ||||||||| ||||| ||||||||||||||||| || |||| | Sbjct: 1 atgtctgaacttgactcccaggttcccactgcctttgatccgtttgctgatgcgaatgtt 60 Query: 199 gaggactc 206 |||||||| Sbjct: 61 gaggactc 68
>dbj|AP005104.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0042E08 Length = 166257 Score = 63.9 bits (32), Expect = 2e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 176 atccgtttgctgaggcaaatgctgaggactccggcgctggtgctggatcaaagaactatg 235 ||||||||| || |||||||||||||||||| | | |||||||||||||||| | |||| Sbjct: 27287 atccgtttgtggaagcaaatgctgaggactccagtgttggtgctggatcaaaggaatatg 27346 Query: 236 tgca 239 |||| Sbjct: 27347 tgca 27350
>dbj|AK101048.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033009H10, full insert sequence Length = 2452 Score = 63.9 bits (32), Expect = 2e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 176 atccgtttgctgaggcaaatgctgaggactccggcgctggtgctggatcaaagaactatg 235 ||||||||| || |||||||||||||||||| | | |||||||||||||||| | |||| Sbjct: 2045 atccgtttgtggaagcaaatgctgaggactccagtgttggtgctggatcaaaggaatatg 2104 Query: 236 tgca 239 |||| Sbjct: 2105 tgca 2108
>dbj|AK067031.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091L18, full insert sequence Length = 2921 Score = 63.9 bits (32), Expect = 2e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 176 atccgtttgctgaggcaaatgctgaggactccggcgctggtgctggatcaaagaactatg 235 ||||||||| || |||||||||||||||||| | | |||||||||||||||| | |||| Sbjct: 2575 atccgtttgtggaagcaaatgctgaggactccagtgttggtgctggatcaaaggaatatg 2634 Query: 236 tgca 239 |||| Sbjct: 2635 tgca 2638
>gb|BT016285.1| Zea mays clone Contig118 mRNA sequence Length = 861 Score = 61.9 bits (31), Expect = 9e-07 Identities = 61/71 (85%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 |||||||||||||||||| | ||| | |||||||| || ||||| || |||||||| ||| Sbjct: 243 ttcatgtctgatctcgacattcagatcccaactgccttcgatcccttcgctgaggccaat 302 Query: 196 gctgaggactc 206 |||| |||||| Sbjct: 303 gctggggactc 313
>gb|AY103847.1| Zea mays PCO105184 mRNA sequence Length = 1006 Score = 61.9 bits (31), Expect = 9e-07 Identities = 61/71 (85%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 |||||||||||||||||| | ||| | |||||||| || ||||| || |||||||| ||| Sbjct: 361 ttcatgtctgatctcgacattcagatcccaactgccttcgatcccttcgctgaggccaat 420 Query: 196 gctgaggactc 206 |||| |||||| Sbjct: 421 gctggggactc 431
>gb|AF034944.1|AF034944 Zea mays translation initiation factor GOS2 (TIF) mRNA, complete cds Length = 759 Score = 61.9 bits (31), Expect = 9e-07 Identities = 61/71 (85%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 |||||||||||||||||| | ||| | |||||||| || ||||| || |||||||| ||| Sbjct: 133 ttcatgtctgatctcgacattcagatcccaactgccttcgatcccttcgctgaggccaat 192 Query: 196 gctgaggactc 206 |||| |||||| Sbjct: 193 gctggggactc 203
>gb|AC146555.5| Medicago truncatula clone mth2-10p14, complete sequence Length = 127640 Score = 58.0 bits (29), Expect = 1e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 175 gatccgtttgctgaggcaaatgctgaggactccggcgctgg 215 ||||| |||||||||||||||||||||||| |||| ||||| Sbjct: 53484 gatccttttgctgaggcaaatgctgaggacgccggtgctgg 53524
>gb|AF508969.1| Triticum aestivum translation initiation factor mRNA, complete cds Length = 742 Score = 58.0 bits (29), Expect = 1e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 |||||||||||||| ||||| ||| | |||||||| ||||| || ||||| ||||| ||| Sbjct: 133 ttcatgtctgatcttgacgttcagatcccaactgcctttgacccctttgccgaggcgaat 192 Query: 196 gctgaggac 204 |||| |||| Sbjct: 193 gctggggac 201
>gb|L33876.1|TOBPASEQC Nicotiana tabacum (clone 12) activating factor DNA sequence Length = 243 Score = 56.0 bits (28), Expect = 6e-05 Identities = 43/48 (89%) Strand = Plus / Plus Query: 144 tgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggc 191 |||| ||||||||||| | ||| ||||||||||||| ||||||||||| Sbjct: 99 tgatatcgacgtccagatcccatctgcttttgatccatttgctgaggc 146
>gb|AC132483.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0014C03, complete sequence Length = 143739 Score = 52.0 bits (26), Expect = 9e-04 Identities = 47/54 (87%) Strand = Plus / Minus Query: 191 caaatgctgaggactccggcgctggtgctggatcaaagaactatgtgcatgtgc 244 ||||||||||||||||| | | | ||| || ||||||| ||||||||||||||| Sbjct: 118342 caaatgctgaggactccagtgtttgtgttgcatcaaaggactatgtgcatgtgc 118289
>gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092G21, complete sequence Length = 151267 Score = 52.0 bits (26), Expect = 9e-04 Identities = 47/54 (87%) Strand = Plus / Minus Query: 191 caaatgctgaggactccggcgctggtgctggatcaaagaactatgtgcatgtgc 244 ||||||||||||||||| | | | ||| || ||||||| ||||||||||||||| Sbjct: 27597 caaatgctgaggactccagtgtttgtgttgcatcaaaggactatgtgcatgtgc 27544
>gb|L41693.1|PS300016E Eucalyptus globulus bicostata symbiont (F00058) mRNA, ESTun016 Length = 256 Score = 52.0 bits (26), Expect = 9e-04 Identities = 49/56 (87%), Gaps = 3/56 (5%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgt---ccaggttccaactgcttttgatccgtttgctga 188 ||||||||||| ||||||| ||||||||||||| |||||||||| |||||||| Sbjct: 20 ttcatgtctgagctcgacggtgcccaggttccaactacttttgatccttttgctga 75
>emb|AJ519839.1|CAR519839 Coffea arabica mRNA for SUI1 protein Length = 678 Score = 50.1 bits (25), Expect = 0.003 Identities = 55/65 (84%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 ||||||||||| |||| ||||| |||| |||||||||| || ||||||||||| ||| Sbjct: 132 ttcatgtctgaattcgatctccagactccagctgcttttgacccttttgctgaggccaat 191 Query: 196 gctga 200 ||||| Sbjct: 192 gctga 196
>gb|AC005287.4| Arabidopsis thaliana chromosome I BAC F20D21 genomic sequence, complete sequence Length = 143186 Score = 48.1 bits (24), Expect = 0.013 Identities = 30/32 (93%) Strand = Plus / Minus Query: 175 gatccgtttgctgaggcaaatgctgaggactc 206 |||||||| ||||| ||||||||||||||||| Sbjct: 40704 gatccgttcgctgatgcaaatgctgaggactc 40673
>ref|NM_118847.2| Arabidopsis thaliana translation initiation factor AT4G27130 mRNA, complete cds Length = 811 Score = 46.1 bits (23), Expect = 0.053 Identities = 59/71 (83%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 ||||||||||| || || |||||| || ||||| || || ||||||||||| || ||| Sbjct: 248 ttcatgtctgaacttgattcccaggtccctactgccttcgacccgtttgctgatgcgaat 307 Query: 196 gctgaggactc 206 ||||||||||| Sbjct: 308 gctgaggactc 318
>gb|BC067680.1| Danio rerio v-maf musculoaponeurotic fibrosarcoma oncogene homolog g (avian), 2, mRNA (cDNA clone MGC:85896 IMAGE:6970881), complete cds Length = 2377 Score = 46.1 bits (23), Expect = 0.053 Identities = 23/23 (100%) Strand = Plus / Minus Query: 71 agctcacacatcaagacaataaa 93 ||||||||||||||||||||||| Sbjct: 2100 agctcacacatcaagacaataaa 2078
>gb|AY060537.1| Arabidopsis thaliana AT4g27130/T24A18_80 mRNA, complete cds Length = 342 Score = 46.1 bits (23), Expect = 0.053 Identities = 44/51 (86%) Strand = Plus / Plus Query: 156 ccaggttccaactgcttttgatccgtttgctgaggcaaatgctgaggactc 206 |||||| || ||||| || || ||||||||||| || |||||||||||||| Sbjct: 18 ccaggtccctactgccttcgacccgtttgctgatgcgaatgctgaggactc 68
>gb|AY037234.1| Arabidopsis thaliana AT4g27130/T24A18_80 mRNA, complete cds Length = 737 Score = 46.1 bits (23), Expect = 0.053 Identities = 59/71 (83%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 ||||||||||| || || |||||| || ||||| || || ||||||||||| || ||| Sbjct: 200 ttcatgtctgaacttgattcccaggtccctactgccttcgacccgtttgctgatgcgaat 259 Query: 196 gctgaggactc 206 ||||||||||| Sbjct: 260 gctgaggactc 270
>emb|BX828314.1|CNS0A3U9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH75ZH04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 738 Score = 46.1 bits (23), Expect = 0.053 Identities = 59/71 (83%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 ||||||||||| || || |||||| || ||||| || || ||||||||||| || ||| Sbjct: 177 ttcatgtctgaacttgattcccaggtccctactgccttcgacccgtttgctgatgcgaat 236 Query: 196 gctgaggactc 206 ||||||||||| Sbjct: 237 gctgaggactc 247
>emb|BX828730.1|CNS0A3GG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL33ZF02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 735 Score = 46.1 bits (23), Expect = 0.053 Identities = 59/71 (83%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 ||||||||||| || || |||||| || ||||| || || ||||||||||| || ||| Sbjct: 178 ttcatgtctgaacttgattcccaggtccctactgccttcgacccgtttgctgatgcgaat 237 Query: 196 gctgaggactc 206 ||||||||||| Sbjct: 238 gctgaggactc 248
>ref|NM_212941.1| Danio rerio v-maf musculoaponeurotic fibrosarcoma oncogene homolog g (avian), 2 (mafg2), mRNA Length = 2377 Score = 46.1 bits (23), Expect = 0.053 Identities = 23/23 (100%) Strand = Plus / Minus Query: 71 agctcacacatcaagacaataaa 93 ||||||||||||||||||||||| Sbjct: 2100 agctcacacatcaagacaataaa 2078
>gb|AY088288.1| Arabidopsis thaliana clone 5206 mRNA, complete sequence Length = 805 Score = 46.1 bits (23), Expect = 0.053 Identities = 59/71 (83%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 ||||||||||| || || |||||| || ||||| || || ||||||||||| || ||| Sbjct: 248 ttcatgtctgaacttgattcccaggtccctactgccttcgacccgtttgctgatgcgaat 307 Query: 196 gctgaggactc 206 ||||||||||| Sbjct: 308 gctgaggactc 318
>gb|AF098672.1|AF098672 Brassica oleracea translation initiation factor nps45 mRNA, complete cds Length = 560 Score = 46.1 bits (23), Expect = 0.053 Identities = 59/71 (83%) Strand = Plus / Plus Query: 136 ttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaat 195 ||||||||||| || || |||||| || ||||| || || ||||||||||| || ||| Sbjct: 25 ttcatgtctgaacttgattcccaggtccctactgccttcgacccgtttgctgatgcgaat 84 Query: 196 gctgaggactc 206 ||||||||||| Sbjct: 85 gctgaggactc 95
>emb|AJ309088.1|PPI309088 Pinus pinaster partial mRNA for putative translation factor Length = 635 Score = 44.1 bits (22), Expect = 0.21 Identities = 55/66 (83%) Strand = Plus / Plus Query: 135 gttcatgtctgatctcgacgtccaggttccaactgcttttgatccgtttgctgaggcaaa 194 ||||||||| ||||| ||||| ||| |||| ||| | |||||| |||||||| ||||| Sbjct: 191 gttcatgtcagatctagacgttcagattccgggtgcctatgatccttttgctgatgcaaa 250 Query: 195 tgctga 200 |||||| Sbjct: 251 tgctga 256
>gb|AC021736.9| Homo sapiens chromosome 8, clone RP11-115J16, complete sequence Length = 158806 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 14 gtgttgcctttctcctcctccc 35 |||||||||||||||||||||| Sbjct: 109987 gtgttgcctttctcctcctccc 110008
>gb|AC022784.7| Homo sapiens chromosome 8, clone RP11-10A14, complete sequence Length = 187253 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 14 gtgttgcctttctcctcctccc 35 |||||||||||||||||||||| Sbjct: 42093 gtgttgcctttctcctcctccc 42114
>gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence Length = 179668 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 182 ttgctgaggcaaatgctgagg 202 ||||||||||||||||||||| Sbjct: 38737 ttgctgaggcaaatgctgagg 38757
>ref|XM_358340.5| PREDICTED: Mus musculus nucleoporin 214, transcript variant 1 (Nup214), mRNA Length = 8209 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 ccgtgttgcctttctcctcctcccc 36 |||||||||| |||||||||||||| Sbjct: 1927 ccgtgttgccgttctcctcctcccc 1951
>ref|XM_989973.1| PREDICTED: Mus musculus nucleoporin 214, transcript variant 5 (Nup214), mRNA Length = 2642 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 ccgtgttgcctttctcctcctcccc 36 |||||||||| |||||||||||||| Sbjct: 1927 ccgtgttgccgttctcctcctcccc 1951
>ref|XM_990012.1| PREDICTED: Mus musculus nucleoporin 214, transcript variant 6 (Nup214), mRNA Length = 3364 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 ccgtgttgcctttctcctcctcccc 36 |||||||||| |||||||||||||| Sbjct: 1927 ccgtgttgccgttctcctcctcccc 1951
>ref|XM_990051.1| PREDICTED: Mus musculus nucleoporin 214, transcript variant 7 (Nup214), mRNA Length = 4281 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 ccgtgttgcctttctcctcctcccc 36 |||||||||| |||||||||||||| Sbjct: 1927 ccgtgttgccgttctcctcctcccc 1951
>ref|XM_990078.1| PREDICTED: Mus musculus nucleoporin 214, transcript variant 8 (Nup214), mRNA Length = 5765 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 ccgtgttgcctttctcctcctcccc 36 |||||||||| |||||||||||||| Sbjct: 273 ccgtgttgccgttctcctcctcccc 297
>ref|XM_990101.1| PREDICTED: Mus musculus nucleoporin 214, transcript variant 9 (Nup214), mRNA Length = 8552 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 ccgtgttgcctttctcctcctcccc 36 |||||||||| |||||||||||||| Sbjct: 2324 ccgtgttgccgttctcctcctcccc 2348
>ref|XM_990130.1| PREDICTED: Mus musculus nucleoporin 214, transcript variant 10 (Nup214), mRNA Length = 8155 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 ccgtgttgcctttctcctcctcccc 36 |||||||||| |||||||||||||| Sbjct: 1927 ccgtgttgccgttctcctcctcccc 1951
>ref|XM_990157.1| PREDICTED: Mus musculus nucleoporin 214, transcript variant 11 (Nup214), mRNA Length = 8209 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 ccgtgttgcctttctcctcctcccc 36 |||||||||| |||||||||||||| Sbjct: 1927 ccgtgttgccgttctcctcctcccc 1951
>ref|XM_917102.2| PREDICTED: Mus musculus nucleoporin 214, transcript variant 2 (Nup214), mRNA Length = 8210 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 ccgtgttgcctttctcctcctcccc 36 |||||||||| |||||||||||||| Sbjct: 1928 ccgtgttgccgttctcctcctcccc 1952
>emb|AL161566.2|ATCHRIV66 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 66 Length = 198372 Score = 42.1 bits (21), Expect = 0.83 Identities = 27/29 (93%) Strand = Plus / Minus Query: 178 ccgtttgctgaggcaaatgctgaggactc 206 ||||||||||| || |||||||||||||| Sbjct: 109175 ccgtttgctgatgcgaatgctgaggactc 109147
>emb|AL035680.1|ATT24A18 Arabidopsis thaliana DNA chromosome 4, BAC clone T24A18, partial sequence (ESSA project) Length = 45980 Score = 42.1 bits (21), Expect = 0.83 Identities = 27/29 (93%) Strand = Plus / Minus Query: 178 ccgtttgctgaggcaaatgctgaggactc 206 ||||||||||| || |||||||||||||| Sbjct: 25664 ccgtttgctgatgcgaatgctgaggactc 25636
>gb|BC039282.1| Mus musculus nucleoporin 214, mRNA (cDNA clone MGC:37347 IMAGE:4976266), complete cds Length = 4962 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 ccgtgttgcctttctcctcctcccc 36 |||||||||| |||||||||||||| Sbjct: 273 ccgtgttgccgttctcctcctcccc 297
>gb|AC092562.4| Papio hamadryas BAC RP41-285I13 (Rosewell Park Cancer Institute BAC Library) complete sequence Length = 183586 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 gttgcctttctcctcctcccc 36 ||||||||||||||||||||| Sbjct: 111275 gttgcctttctcctcctcccc 111255
>dbj|AK162214.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length enriched library, clone:7420458G07 product:Warning: possibly chimeric clone, full insert sequence Length = 2440 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 ccgtgttgcctttctcctcctcccc 36 |||||||||| |||||||||||||| Sbjct: 612 ccgtgttgccgttctcctcctcccc 636
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 182 ttgctgaggcaaatgctgagg 202 ||||||||||||||||||||| Sbjct: 28079604 ttgctgaggcaaatgctgagg 28079624 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 ttgctgaggcaaatgctgag 201 |||||||||||||||||||| Sbjct: 21437476 ttgctgaggcaaatgctgag 21437457
>gb|AY855167.1| Sus scrofa RPGR mRNA, partial cds Length = 1737 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 17 ttgcctttctcctcctccccc 37 ||||||||||||||||||||| Sbjct: 257 ttgcctttctcctcctccccc 237
>dbj|AK122189.1| Mus musculus mRNA for mKIAA0023 protein Length = 6558 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 ccgtgttgcctttctcctcctcccc 36 |||||||||| |||||||||||||| Sbjct: 1885 ccgtgttgccgttctcctcctcccc 1909
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 182 ttgctgaggcaaatgctgagg 202 ||||||||||||||||||||| Sbjct: 28064482 ttgctgaggcaaatgctgagg 28064502 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 ttgctgaggcaaatgctgag 201 |||||||||||||||||||| Sbjct: 21747675 ttgctgaggcaaatgctgag 21747656
>emb|AL928893.10| Mouse DNA sequence from clone RP23-55I14 on chromosome 2, complete sequence Length = 235241 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 ccgtgttgcctttctcctcctcccc 36 |||||||||| |||||||||||||| Sbjct: 83021 ccgtgttgccgttctcctcctcccc 83045
>gb|U81042.1|ATU81042 Arabidopsis thaliana translation initiation factor gene, complete cds Length = 1787 Score = 42.1 bits (21), Expect = 0.83 Identities = 27/29 (93%) Strand = Plus / Plus Query: 178 ccgtttgctgaggcaaatgctgaggactc 206 ||||||||||| || |||||||||||||| Sbjct: 1093 ccgtttgctgatgcgaatgctgaggactc 1121
>gb|AC159376.12| Mus musculus 10 BAC RP23-114N21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 223292 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 acacatcaagacaataaata 95 |||||||||||||||||||| Sbjct: 98444 acacatcaagacaataaata 98425
>gb|AY505029.1| Helicobacter pylori isolate 4a hypothetical protein gene, partial cds; hypervariable region; and 16S ribosomal RNA gene, partial sequence Length = 1297 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 caatcaaaccaaacaacaag 135 |||||||||||||||||||| Sbjct: 698 caatcaaaccaaacaacaag 717
>gb|AY386265.1| Bovine papular stomatitis virus strain BV-AR02, complete genome Length = 134431 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 ccaatcaaaccaaacaacaa 134 |||||||||||||||||||| Sbjct: 4648 ccaatcaaaccaaacaacaa 4629
>gb|AC136148.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0029K08, complete sequence Length = 136687 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 ttgctgaggcaaatgctgag 201 |||||||||||||||||||| Sbjct: 95226 ttgctgaggcaaatgctgag 95207
>gb|AC102432.9| Mus musculus chromosome 19, clone RP24-114A21, complete sequence Length = 199240 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 tatgtgcatgtgcgtgtcca 251 |||||||||||||||||||| Sbjct: 123617 tatgtgcatgtgcgtgtcca 123636
>gb|AC161413.5| Mus musculus chromosome 19, clone RP23-106D17, complete sequence Length = 215356 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 tatgtgcatgtgcgtgtcca 251 |||||||||||||||||||| Sbjct: 7446 tatgtgcatgtgcgtgtcca 7427
>emb|X51910.1|OSGOS2G O.sativa (rice) constitutive GOS2 gene Length = 3192 Score = 40.1 bits (20), Expect = 3.3 Identities = 56/68 (82%) Strand = Plus / Plus Query: 175 gatccgtttgctgaggcaaatgctgaggactccggcgctggtgctggatcaaagaactat 234 ||||| ||||||||||| ||||||| ||||| || || | ||| ||||||||| |||| Sbjct: 2321 gatccctttgctgaggccaatgctggagactctggtgcggctgcaggatcaaaggactac 2380 Query: 235 gtgcatgt 242 || ||||| Sbjct: 2381 gttcatgt 2388
>gb|AC159377.8| Mus musculus 10 BAC RP23-335D19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205483 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 acacatcaagacaataaata 95 |||||||||||||||||||| Sbjct: 151457 acacatcaagacaataaata 151438
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome Length = 3544738 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 tcaaaccaaacaacaagttc 138 |||||||||||||||||||| Sbjct: 2237200 tcaaaccaaacaacaagttc 2237181
>dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0681F05 Length = 144741 Score = 40.1 bits (20), Expect = 3.3 Identities = 56/68 (82%) Strand = Plus / Minus Query: 175 gatccgtttgctgaggcaaatgctgaggactccggcgctggtgctggatcaaagaactat 234 ||||| ||||||||||| ||||||| ||||| || || | ||| ||||||||| |||| Sbjct: 33141 gatccctttgctgaggccaatgctggagactctggtgcggctgcaggatcaaaggactac 33082 Query: 235 gtgcatgt 242 || ||||| Sbjct: 33081 gttcatgt 33074
>dbj|AB005232.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBG8 Length = 80315 Score = 40.1 bits (20), Expect = 3.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 175 gatccgtttgctgaggcaaatgctgaggactc 206 |||||||||||||| || |||| ||||||||| Sbjct: 3959 gatccgtttgctgatgcgaatgttgaggactc 3990
>emb|AL840629.24| Mouse DNA sequence from clone RP23-334A5 on chromosome 4, complete sequence Length = 214140 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 ccaatcaaaccaaacaacaa 134 |||||||||||||||||||| Sbjct: 207713 ccaatcaaaccaaacaacaa 207732
>dbj|AP002500.4| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2240G15, complete sequences Length = 49000 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 180 gtttgctgaggcaaatgctgagga 203 ||||||||| |||||||||||||| Sbjct: 27397 gtttgctgaagcaaatgctgagga 27420
>gb|L13695.1|AGLRPE Aglaothamnion neglectum R-phycoerythrin gamma-subunit mRNA, complete cds Length = 1273 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 cctcccccgcgttcgccgtc 49 |||||||||||||||||||| Sbjct: 166 cctcccccgcgttcgccgtc 185 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,404,271 Number of Sequences: 3902068 Number of extensions: 2404271 Number of successful extensions: 66088 Number of sequences better than 10.0: 91 Number of HSP's better than 10.0 without gapping: 95 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65768 Number of HSP's gapped (non-prelim): 319 length of query: 254 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 232 effective length of database: 17,147,199,772 effective search space: 3978150347104 effective search space used: 3978150347104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
