ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NLT43_HORVU (Q42842) Nonspecific lipid-transfer protein 4.3 prec... 32 0.45
2NLT42_HORVU (Q43875) Nonspecific lipid-transfer protein 4.2 prec... 32 0.45
3NLT41_HORVU (Q43767) Nonspecific lipid-transfer protein 4.1 prec... 32 0.45
4SPT6H_CAEEL (P34703) Suppressor of Ty 6 homolog (Abnormal embryo... 30 2.2
5NLTP8_HORVU (Q43871) Nonspecific lipid-transfer protein Cw18 pre... 28 5.0
6NLTP_ELECO (P23802) Nonspecific lipid-transfer protein (LTP) (Al... 28 6.5

>NLT43_HORVU (Q42842) Nonspecific lipid-transfer protein 4.3 precursor (LTP 4.3)|
          Length = 115

 Score = 32.0 bits (71), Expect = 0.45
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +2

Query: 2   PYAISASVDCSKIR 43
           PYAISASVDCSKIR
Sbjct: 102 PYAISASVDCSKIR 115



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>NLT42_HORVU (Q43875) Nonspecific lipid-transfer protein 4.2 precursor (LTP 4.2)|
           (Low-temperature-responsive protein 4.9)
          Length = 115

 Score = 32.0 bits (71), Expect = 0.45
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +2

Query: 2   PYAISASVDCSKIR 43
           PYAISASVDCSKIR
Sbjct: 102 PYAISASVDCSKIR 115



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>NLT41_HORVU (Q43767) Nonspecific lipid-transfer protein 4.1 precursor (LTP 4.1)|
           (CW21) (CW-21)
          Length = 115

 Score = 32.0 bits (71), Expect = 0.45
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +2

Query: 2   PYAISASVDCSKIR 43
           PYAISASVDCSKIR
Sbjct: 102 PYAISASVDCSKIR 115



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>SPT6H_CAEEL (P34703) Suppressor of Ty 6 homolog (Abnormal embryogenesis protein|
            5)
          Length = 1521

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 64   IAPAIDAEYVEVTHTYIYMN-KCSHIIFMWDIYRERQRERGRSIYV 198
            + P I   +   TH Y + N  C     +    RE++RE GRS YV
Sbjct: 1384 VQPMIQISHEITTHKYFFPNGTCEETEAVEQFVREKKRELGRSPYV 1429



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>NLTP8_HORVU (Q43871) Nonspecific lipid-transfer protein Cw18 precursor (LTP|
           Cw-18) (PKG2316)
          Length = 115

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = +2

Query: 2   PYAISASVDCSKI 40
           PY ISASVDCSKI
Sbjct: 102 PYTISASVDCSKI 114



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>NLTP_ELECO (P23802) Nonspecific lipid-transfer protein (LTP) (Alpha-amylase|
           inhibitor I-2)
          Length = 95

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 10/13 (76%), Positives = 13/13 (100%)
 Frame = +2

Query: 2   PYAISASVDCSKI 40
           PYAISAS+DCS++
Sbjct: 81  PYAISASIDCSRV 93


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,858,903
Number of Sequences: 219361
Number of extensions: 424055
Number of successful extensions: 1043
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 80,573,946
effective HSP length: 47
effective length of database: 70,263,979
effective search space used: 1686335496
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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