Clone Name | basd2h01 |
---|---|
Clone Library Name | barley_pub |
>gb|AC113320.7| Mus musculus chromosome 6, clone RP23-445E16, complete sequence Length = 267708 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 37 tacataatatatttgtgtatat 58 |||||||||||||||||||||| Sbjct: 208918 tacataatatatttgtgtatat 208897
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Plus Query: 36 atacataatatatttgtgtatatgaa 61 |||||||||||| ||||||||||||| Sbjct: 12053277 atacataatataattgtgtatatgaa 12053302
>gb|AC106874.4| Homo sapiens BAC clone RP11-390E19 from 2, complete sequence Length = 121348 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Minus Query: 37 tacataatatatttgtgtatatgaac 62 |||||||||||| ||||||||||||| Sbjct: 118125 tacataatatatatgtgtatatgaac 118100
>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0441A12 Length = 185437 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Plus Query: 36 atacataatatatttgtgtatatgaa 61 |||||||||||| ||||||||||||| Sbjct: 157757 atacataatataattgtgtatatgaa 157782
>emb|AL773507.7| Mouse DNA sequence from clone RP23-322E14 on chromosome 4 Contains a phospholipase A2, group XIIA (Pla2g12) pseudogene, complete sequence Length = 200646 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Minus Query: 34 acatacataatatatttgtgtatat 58 |||||||||||||||| |||||||| Sbjct: 95319 acatacataatatattcgtgtatat 95295
>gb|AC074182.6| Homo sapiens BAC clone RP11-553G13 from 2, complete sequence Length = 190436 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 ttacttcagttctgcatggtc 25 ||||||||||||||||||||| Sbjct: 63192 ttacttcagttctgcatggtc 63172
>gb|AC009496.3| Homo sapiens BAC clone RP11-500G18 from 2, complete sequence Length = 96843 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Plus Query: 34 acatacataatatatttgtgtatat 58 ||||||||||||||| ||||||||| Sbjct: 67778 acatacataatatatatgtgtatat 67802
>emb|BX548066.3| Zebrafish DNA sequence from clone CH211-226F1 in linkage group 20, complete sequence Length = 185926 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 acataatatatttgtgtatat 58 ||||||||||||||||||||| Sbjct: 91150 acataatatatttgtgtatat 91170
>emb|X75939.1|ISMVCP Iris severe mosaic potyvirus gene for coat protein Length = 2510 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 32 aaacatacataatatatttgt 52 ||||||||||||||||||||| Sbjct: 2218 aaacatacataatatatttgt 2198
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 253 cccctgctttgttcgatttggtag 276 ||||||||||||||||| |||||| Sbjct: 2657217 cccctgctttgttcgatgtggtag 2657240
>gb|AC159266.3| Mus musculus BAC clone RP24-64D24 from chromosome 8, complete sequence Length = 212727 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 ctccccctcccctgctttgt 264 |||||||||||||||||||| Sbjct: 35884 ctccccctcccctgctttgt 35865
>gb|AC110880.10| Mus musculus chromosome 7, clone RP24-456G3, complete sequence Length = 162685 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 acaaattcagaaatcaacac 99 |||||||||||||||||||| Sbjct: 72586 acaaattcagaaatcaacac 72567
>gb|BT014752.1| Arabidopsis thaliana At2g07681 mRNA, complete cds Length = 1201 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 tccccctcccctgctttgtt 265 |||||||||||||||||||| Sbjct: 273 tccccctcccctgctttgtt 254
>emb|CR356243.16| Zebrafish DNA sequence from clone CH211-209O4 in linkage group 6, complete sequence Length = 216472 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 cataatatatttgtgtatat 58 |||||||||||||||||||| Sbjct: 192509 cataatatatttgtgtatat 192528
>gb|AC145941.2| Pan troglodytes BAC clone RP43-40O7 from 7, complete sequence Length = 172479 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ataatatatttgtgtatatg 59 |||||||||||||||||||| Sbjct: 58097 ataatatatttgtgtatatg 58078
>gb|AC012061.4| Homo sapiens BAC clone CTD-2052D1 from 7, complete sequence Length = 81670 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ataatatatttgtgtatatg 59 |||||||||||||||||||| Sbjct: 72408 ataatatatttgtgtatatg 72389
>gb|AC096035.6| Rattus norvegicus 4 BAC CH230-16M16 (Children's Hospital Oakland Research Institute) complete sequence Length = 228433 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 35 catacataatatatttgtgtatat 58 |||| ||||||||||||||||||| Sbjct: 71415 cataaataatatatttgtgtatat 71438
>gb|AC099533.36| Pan troglodytes clone rp43-41g5, complete sequence Length = 226331 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 tgtatgtgttatattaccaa 229 |||||||||||||||||||| Sbjct: 1271 tgtatgtgttatattaccaa 1290
>emb|AL137067.7| Human DNA sequence from clone RP11-13B9 on chromosome 9q22.32-31.3 Contains a gene for a novel protein similar to a glycosyltransferase, the gene for protein translocation complex beta (SEC61B), a novel gene for a protein similar to cytokeratin 8 (KRT8)and a CpG island, complete sequence Length = 197169 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 36 atacataatatatttgtgtatatg 59 ||||||||||||| |||||||||| Sbjct: 11660 atacataatatatatgtgtatatg 11637
>ref|XM_791418.1| PREDICTED: Strongylocentrotus purpuratus similar to Low-density lipoprotein receptor-related protein 2 precursor (Megalin) (Glycoprotein 330) (gp330) (LOC591871), mRNA Length = 4542 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 tgttttgctccccctcccct 257 |||||||||||||||||||| Sbjct: 4417 tgttttgctccccctcccct 4398
>ref|XM_789412.1| PREDICTED: Strongylocentrotus purpuratus similar to low density lipoprotein receptor-related protein 2 (LOC589778), mRNA Length = 4548 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 tgttttgctccccctcccct 257 |||||||||||||||||||| Sbjct: 4519 tgttttgctccccctcccct 4500
>gb|AC152411.5| Mus musculus BAC clone RP24-87M19 from chromosome 10, complete sequence Length = 204973 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 catacataatatatttgtgt 54 |||||||||||||||||||| Sbjct: 108497 catacataatatatttgtgt 108478
>dbj|AK125841.1| Homo sapiens cDNA FLJ43853 fis, clone TESTI4006819, moderately similar to Alpha enolase (EC 4.2.1.11) Length = 4435 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 atatatttgtgtatatgaac 62 |||||||||||||||||||| Sbjct: 116 atatatttgtgtatatgaac 135
>gb|AC007730.3| Arabidopsis thaliana chromosome 2 BAC T5M2 genomic sequence, complete sequence Length = 94302 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 tccccctcccctgctttgtt 265 |||||||||||||||||||| Sbjct: 67768 tccccctcccctgctttgtt 67749 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 tccccctcccctgctttgtt 265 |||||||||||||||||||| Sbjct: 18135 tccccctcccctgctttgtt 18154
>gb|AC007143.5| Arabidopsis thaliana chromosome 2 BAC T17H1 genomic sequence, complete sequence Length = 75812 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 tccccctcccctgctttgtt 265 |||||||||||||||||||| Sbjct: 33601 tccccctcccctgctttgtt 33582
>gb|AC019077.9| Homo sapiens BAC clone RP11-323J4 from 4, complete sequence Length = 190437 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 cttttaatagtgtaaagagg 208 |||||||||||||||||||| Sbjct: 182047 cttttaatagtgtaaagagg 182066
>emb|BX936429.8| Zebrafish DNA sequence from clone DKEY-224E22 in linkage group 18, complete sequence Length = 158832 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 gaacttgtacttaggtacaa 83 |||||||||||||||||||| Sbjct: 28920 gaacttgtacttaggtacaa 28901
>gb|AC078961.23| Homo sapiens 4 BAC RP11-486H4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 179762 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 cttttaatagtgtaaagagg 208 |||||||||||||||||||| Sbjct: 42076 cttttaatagtgtaaagagg 42057
>gb|AC126267.3| Mus musculus BAC clone RP23-191M12 from chromosome 9, complete sequence Length = 218974 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 25 catgcacaaacatacataatatat 48 |||||||| ||||||||||||||| Sbjct: 94580 catgcacacacatacataatatat 94603
>gb|AC147288.4| Pan troglodytes BAC clone RP43-74L22 from chromosome 7, complete sequence Length = 140079 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ataatatatttgtgtatatg 59 |||||||||||||||||||| Sbjct: 57994 ataatatatttgtgtatatg 57975
>gb|AC007282.4| Homo sapiens BAC clone RP11-484N9 from 2, complete sequence Length = 182632 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 atatatttgtgtatatgaac 62 |||||||||||||||||||| Sbjct: 1303 atatatttgtgtatatgaac 1322
>ref|XM_231550.3| PREDICTED: Rattus norvegicus RNA binding motif protein 28 (predicted) (Rbm28_predicted), mRNA Length = 2984 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 35 catacataatatatttgtgtatat 58 |||| ||||||||||||||||||| Sbjct: 2626 cataaataatatatttgtgtatat 2603
>emb|BX005079.6| Zebrafish DNA sequence from clone CH211-176D9, complete sequence Length = 157845 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 acaaacatacataatatatt 49 |||||||||||||||||||| Sbjct: 107869 acaaacatacataatatatt 107888
>emb|BX248097.7| Zebrafish DNA sequence from clone CH211-232M8 in linkage group 14, complete sequence Length = 171333 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 36 atacataatatatttgtgtatatg 59 ||||||||||||| |||||||||| Sbjct: 48464 atacataatatatatgtgtatatg 48441
>gb|AC121887.4| Mus musculus BAC clone RP24-142B15 from 5, complete sequence Length = 234919 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 gaactgaacttgtacttaggtaca 82 |||||||| ||||||||||||||| Sbjct: 60019 gaactgaatttgtacttaggtaca 59996
>emb|BX897712.12| Zebrafish DNA sequence from clone CH211-146A9 in linkage group 4, complete sequence Length = 119220 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 tacataatatatttgtgtat 56 |||||||||||||||||||| Sbjct: 85033 tacataatatatttgtgtat 85014
>emb|Y08501.2|MIATGENA Arabidopsis thaliana mitochondrial genome Length = 366924 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 tccccctcccctgctttgtt 265 |||||||||||||||||||| Sbjct: 240841 tccccctcccctgctttgtt 240860
>emb|BX927414.24| Zebrafish DNA sequence from clone DKEYP-5A5 in linkage group 10, complete sequence Length = 126112 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 atgcacaaacatacataatatatt 49 ||||||| |||||||||||||||| Sbjct: 111761 atgcacacacatacataatatatt 111738
>emb|CR548631.18| Zebrafish DNA sequence from clone CH211-117I20 in linkage group 6, complete sequence Length = 169904 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 cataatatatttgtgtatat 58 |||||||||||||||||||| Sbjct: 31045 cataatatatttgtgtatat 31064
>gb|AC156028.2| Mus musculus BAC clone RP23-61A11 from chromosome 8, complete sequence Length = 212724 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 ctccccctcccctgctttgt 264 |||||||||||||||||||| Sbjct: 210346 ctccccctcccctgctttgt 210327
>emb|AL731767.18| Mouse DNA sequence from clone RP23-338L13 on chromosome 2, complete sequence Length = 135926 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ataatatatttgtgtatatg 59 |||||||||||||||||||| Sbjct: 16794 ataatatatttgtgtatatg 16813
>emb|AL691498.15| Mouse DNA sequence from clone RP23-16B21 on chromosome 2, complete sequence Length = 122757 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 aatatatttgtgtatatgaa 61 |||||||||||||||||||| Sbjct: 26156 aatatatttgtgtatatgaa 26175 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,318,499 Number of Sequences: 3902068 Number of extensions: 3318499 Number of successful extensions: 85771 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85652 Number of HSP's gapped (non-prelim): 119 length of query: 297 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 275 effective length of database: 17,147,199,772 effective search space: 4715479937300 effective search space used: 4715479937300 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)