ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2g19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KNG_ANAMI (P83857) Kininogen [Contains: Bradykinin] (Fragments) 28 5.6
2MATK_MUSLA (Q8HV04) Maturase K (Intron maturase) 28 7.3
3CHST9_HUMAN (Q7L1S5) Carbohydrate sulfotransferase 9 (EC 2.8.2.-... 28 7.3
4VGLE_VZVD (P09259) Glycoprotein E precursor (Glycoprotein GI) 27 9.5
5FTHS_BACAN (Q81RE1) Formate--tetrahydrofolate ligase (EC 6.3.4.3... 27 9.5

>KNG_ANAMI (P83857) Kininogen [Contains: Bradykinin] (Fragments)|
          Length = 188

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 22/55 (40%), Positives = 27/55 (49%)
 Frame = -3

Query: 196 YVFKSEAGSDQHRSLEKTSRSSFPW*AGEATSLANLPTTPSMYTTYNAFMFSRIS 32
           +V  SE GSD   SL+ TSRS  P  AG     +N P T   Y +Y      R+S
Sbjct: 30  FVXYSENGSDSVYSLQFTSRSDCP--AG-----SNKPWTECDYLSYERRFNERLS 77



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>MATK_MUSLA (Q8HV04) Maturase K (Intron maturase)|
          Length = 511

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
 Frame = +2

Query: 149 FQTSVLITSSLRLENVLLISYLTDLFTVRFYTRKLLINLL-------FCCYSG 286
           + +SVLI SS     +L  S++ D+FT +F T   +I L+       FC  SG
Sbjct: 338 YLSSVLINSSAVRNQMLENSFIMDIFTKKFDTIVPIIPLVRSSSKAKFCTVSG 390



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>CHST9_HUMAN (Q7L1S5) Carbohydrate sulfotransferase 9 (EC 2.8.2.-)|
           (N-acetylgalactosamine-4-O-sulfotransferase 2)
           (GalNAc-4-O-sulfotransferase 2) (GALNAc-4-ST2)
          Length = 438

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 89  SHHSLNVHH-IQRIYVFEDFQVLACXQPRA 3
           SHH  ++ H + RIYV +  ++L C  P+A
Sbjct: 188 SHHQSHLFHTVSRIYVEDKHKILYCEVPKA 217



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>VGLE_VZVD (P09259) Glycoprotein E precursor (Glycoprotein GI)|
          Length = 623

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 219 TFLQFVFTPENC**IYCFAVILEAHIVPLSFT 314
           T L+FV TPE+   +Y F V    H+  +++T
Sbjct: 461 TTLKFVDTPESLSGLYVFVVYFNGHVEAVAYT 492



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>FTHS_BACAN (Q81RE1) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 562

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 6   TRLXARKDLEILENINALYVVYIEGVVGRLAREVASPAH-QGKLDLDVFSKL 158
           T    + D+EI +  N   +  I   +  L  E+    H +GKL LD+F +L
Sbjct: 3   TTTTVKSDIEIAQEANMKKIQEIAADLNILEDELEPYGHYKGKLSLDIFKRL 54


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,094,267
Number of Sequences: 219361
Number of extensions: 753225
Number of successful extensions: 1830
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1830
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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