Clone Name | basd2g19 |
---|---|
Clone Library Name | barley_pub |
>gb|AY109236.1| Zea mays PCO143837 mRNA sequence Length = 665 Score = 115 bits (58), Expect = 1e-22 Identities = 115/134 (85%) Strand = Plus / Plus Query: 34 aaatcctcgaaaacataaatgcgttgtatgtggtgtacattgagggagtggtgggaaggt 93 ||||||| |||||||| |||| | | |||||||||||||||||| | ||||| ||||||| Sbjct: 251 aaatcctggaaaacatgaatgggctctatgtggtgtacattgagcgtgtggtcggaaggt 310 Query: 94 tggcgagggaggtggcttctcctgctcaccaggggaagctggacctggatgtcttttcca 153 |||| ||||| |||||| || |||| || ||||||||||||||||| || || || |||| Sbjct: 311 tggcaagggatgtggctcctgctgcacatcaggggaagctggacctagaagttttctcca 370 Query: 154 aacttctgtgctga 167 |||| ||||||||| Sbjct: 371 aactgctgtgctga 384
>ref|XM_483731.1| Oryza sativa (japonica cultivar-group), mRNA Length = 957 Score = 87.7 bits (44), Expect = 2e-14 Identities = 86/100 (86%) Strand = Plus / Plus Query: 58 tgtatgtggtgtacattgagggagtggtgggaaggttggcgagggaggtggcttctcctg 117 |||||||||| ||||||||| ||||| | ||||| ||||| |||||||| ||| || ||| Sbjct: 848 tgtatgtggtatacattgagcgagtgattggaagattggcaagggaggtagctcctgctg 907 Query: 118 ctcaccaggggaagctggacctggatgtcttttccaaact 157 |||| ||||||||||||||||| || ||| | |||||||| Sbjct: 908 ctcatcaggggaagctggacctagaagtcctctccaaact 947
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 87.7 bits (44), Expect = 2e-14 Identities = 86/100 (86%) Strand = Plus / Plus Query: 58 tgtatgtggtgtacattgagggagtggtgggaaggttggcgagggaggtggcttctcctg 117 |||||||||| ||||||||| ||||| | ||||| ||||| |||||||| ||| || ||| Sbjct: 27807006 tgtatgtggtatacattgagcgagtgattggaagattggcaagggaggtagctcctgctg 27807065 Query: 118 ctcaccaggggaagctggacctggatgtcttttccaaact 157 |||| ||||||||||||||||| || ||| | |||||||| Sbjct: 27807066 ctcatcaggggaagctggacctagaagtcctctccaaact 27807105
>dbj|AP005480.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0439B07 Length = 89475 Score = 87.7 bits (44), Expect = 2e-14 Identities = 86/100 (86%) Strand = Plus / Plus Query: 58 tgtatgtggtgtacattgagggagtggtgggaaggttggcgagggaggtggcttctcctg 117 |||||||||| ||||||||| ||||| | ||||| ||||| |||||||| ||| || ||| Sbjct: 61463 tgtatgtggtatacattgagcgagtgattggaagattggcaagggaggtagctcctgctg 61522 Query: 118 ctcaccaggggaagctggacctggatgtcttttccaaact 157 |||| ||||||||||||||||| || ||| | |||||||| Sbjct: 61523 ctcatcaggggaagctggacctagaagtcctctccaaact 61562
>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1150_A11 Length = 142010 Score = 87.7 bits (44), Expect = 2e-14 Identities = 86/100 (86%) Strand = Plus / Plus Query: 58 tgtatgtggtgtacattgagggagtggtgggaaggttggcgagggaggtggcttctcctg 117 |||||||||| ||||||||| ||||| | ||||| ||||| |||||||| ||| || ||| Sbjct: 15084 tgtatgtggtatacattgagcgagtgattggaagattggcaagggaggtagctcctgctg 15143 Query: 118 ctcaccaggggaagctggacctggatgtcttttccaaact 157 |||| ||||||||||||||||| || ||| | |||||||| Sbjct: 15144 ctcatcaggggaagctggacctagaagtcctctccaaact 15183
>gb|AC144631.3| Mus musculus BAC clone RP23-112C14 from 3, complete sequence Length = 179548 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 gatgtcttttccaaacttctg 161 ||||||||||||||||||||| Sbjct: 118816 gatgtcttttccaaacttctg 118836
>dbj|AP003113.1| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1747F8 Length = 161402 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 259 aaatctattgttttgctgttattct 283 |||| |||||||||||||||||||| Sbjct: 61383 aaatgtattgttttgctgttattct 61407
>ref|NM_113165.3| Arabidopsis thaliana unknown protein AT3G22660 mRNA, complete cds Length = 1135 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 tcatcaatcatgttcatcacatca 345 |||||||||||||||||| ||||| Sbjct: 120 tcatcaatcatgttcatctcatca 97
>gb|AC113538.14| Mus musculus chromosome 8, clone RP23-118F24, complete sequence Length = 206380 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 tcactcacatattcatcaat 329 |||||||||||||||||||| Sbjct: 92182 tcactcacatattcatcaat 92163
>gb|AC102525.8| Mus musculus chromosome 8, clone RP24-133K20, complete sequence Length = 162463 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 tcactcacatattcatcaat 329 |||||||||||||||||||| Sbjct: 136155 tcactcacatattcatcaat 136136
>gb|AC167244.2| Mus musculus BAC clone RP24-84C23 from chromosome 9, complete sequence Length = 235852 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 tctattgttttgctgttatt 281 |||||||||||||||||||| Sbjct: 103399 tctattgttttgctgttatt 103380
>emb|BX088548.10| Zebrafish DNA sequence from clone CH211-188E4, complete sequence Length = 152713 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 gcttctcctgctcaccaggg 127 |||||||||||||||||||| Sbjct: 145522 gcttctcctgctcaccaggg 145541
>emb|CR853286.10| Zebrafish DNA sequence from clone DKEY-218F9 in linkage group 19, complete sequence Length = 163733 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 gcttctcctgctcaccaggg 127 |||||||||||||||||||| Sbjct: 80266 gcttctcctgctcaccaggg 80285
>gb|AC129016.4| Mus musculus BAC clone RP24-389J11 from chromosome 10, complete sequence Length = 160180 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gagggagtggtgggaaggtt 94 |||||||||||||||||||| Sbjct: 125512 gagggagtggtgggaaggtt 125531
>gb|BT001010.1| Arabidopsis thaliana At3g22660/MWI23_3 mRNA, complete cds Length = 882 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 tcatcaatcatgttcatcacatca 345 |||||||||||||||||| ||||| Sbjct: 53 tcatcaatcatgttcatctcatca 30
>gb|AC073125.5| Homo sapiens BAC clone RP11-636L15 from 7, complete sequence Length = 188804 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 81 gtggtgggaaggttggcgagggag 104 |||||||||||||||| ||||||| Sbjct: 111450 gtggtgggaaggttggggagggag 111427
>emb|BX293991.12| Zebrafish DNA sequence from clone CH211-261I24 in linkage group 11, complete sequence Length = 198825 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gcttctcctgctcaccaggg 127 |||||||||||||||||||| Sbjct: 47206 gcttctcctgctcaccaggg 47187
>emb|BX927088.11| Zebrafish DNA sequence from clone CH211-212M21 in linkage group 2, complete sequence Length = 201361 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gcttctcctgctcaccaggg 127 |||||||||||||||||||| Sbjct: 134012 gcttctcctgctcaccaggg 133993
>gb|AC117489.3| Homo sapiens 3 BAC CTD-2006M22 (CalTech BAC Library D) complete sequence Length = 145729 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 tctattgttttgctgttatt 281 |||||||||||||||||||| Sbjct: 48224 tctattgttttgctgttatt 48205
>gb|AC037441.12| Homo sapiens chromosome , clone RP11-87E22, complete sequence Length = 163147 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 81 gtggtgggaaggttggcgagggaggtgg 108 ||||||||||||| |||| ||||||||| Sbjct: 10991 gtggtgggaaggtgggcgggggaggtgg 11018
>dbj|AK132708.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4922501A19 product:hypothetical protein, full insert sequence Length = 4642 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 accaggggaagctggacctg 140 |||||||||||||||||||| Sbjct: 2816 accaggggaagctggacctg 2835
>gb|AC079950.23| Homo sapiens 12q BAC RP11-575A21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 135123 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cacatattgttccattgtct 308 |||||||||||||||||||| Sbjct: 109517 cacatattgttccattgtct 109536
>gb|AC044810.7| Homo sapiens chromosome 11, clone RP11-494M8, complete sequence Length = 194297 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 tattgttccattgtctttca 312 |||||||||||||||||||| Sbjct: 94861 tattgttccattgtctttca 94842
>gb|AC021427.10| Homo sapiens chromosome 11, clone RP11-399N15, complete sequence Length = 174147 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 tattgttccattgtctttca 312 |||||||||||||||||||| Sbjct: 156913 tattgttccattgtctttca 156894
>gb|AY058884.1| Arabidopsis thaliana AT3g22660/MWI23_3 mRNA, complete cds Length = 1116 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 tcatcaatcatgttcatcacatca 345 |||||||||||||||||| ||||| Sbjct: 120 tcatcaatcatgttcatctcatca 97
>dbj|AK040492.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430103D08 product:weakly similar to EPSILON TUBULIN [Paramecium tetraurelia], full insert sequence Length = 3526 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 gagggagtggtgggaaggtt 94 |||||||||||||||||||| Sbjct: 30 gagggagtggtgggaaggtt 11
>ref|NM_001034902.1| Mus musculus similar to empty spiracles homolog 1 (LOC545861), mRNA Length = 4642 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 accaggggaagctggacctg 140 |||||||||||||||||||| Sbjct: 2816 accaggggaagctggacctg 2835
>gb|AC009428.4|AC009428 Homo sapiens chromosome , clone RP11-45M12, complete sequence Length = 167172 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 ggatgtcttttccaaacttc 159 |||||||||||||||||||| Sbjct: 57822 ggatgtcttttccaaacttc 57803
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome Length = 3031430 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 gaagcacatattgttccatt 304 |||||||||||||||||||| Sbjct: 1104644 gaagcacatattgttccatt 1104625
>dbj|AB022223.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MWI23 Length = 77273 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 322 tcatcaatcatgttcatcacatca 345 |||||||||||||||||| ||||| Sbjct: 6280 tcatcaatcatgttcatctcatca 6303
>dbj|AK129558.1| Homo sapiens cDNA FLJ26047 fis, clone PRS02335 Length = 1784 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 tctattgttttgctgttatt 281 |||||||||||||||||||| Sbjct: 1360 tctattgttttgctgttatt 1379
>emb|CR354561.11| Zebrafish DNA sequence from clone DKEY-203K18 in linkage group 25, complete sequence Length = 163175 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 gcttctcctgctcaccaggg 127 |||||||||||||||||||| Sbjct: 83122 gcttctcctgctcaccaggg 83141
>gb|AC153373.4| Mus musculus 6 BAC RP23-100J14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 218409 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 accaggggaagctggacctg 140 |||||||||||||||||||| Sbjct: 57760 accaggggaagctggacctg 57779
>gb|AC131775.4| Mus musculus BAC clone RP24-313O6 from 6, complete sequence Length = 171720 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 tgctaataaatctattgttt 271 |||||||||||||||||||| Sbjct: 63477 tgctaataaatctattgttt 63458
>gb|AC153958.2| Mus musculus 10 BAC RP24-541B4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 176618 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 gagggagtggtgggaaggtt 94 |||||||||||||||||||| Sbjct: 133102 gagggagtggtgggaaggtt 133083
>gb|AC055854.14| Homo sapiens chromosome 8, clone RP11-459E5, complete sequence Length = 138388 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 81 gtggtgggaaggttggcgagggaggtgg 108 ||||||||||||| |||| ||||||||| Sbjct: 86138 gtggtgggaaggtgggcgggggaggtgg 86165 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,521,557 Number of Sequences: 3902068 Number of extensions: 3521557 Number of successful extensions: 72445 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72363 Number of HSP's gapped (non-prelim): 82 length of query: 348 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 326 effective length of database: 17,147,199,772 effective search space: 5589987125672 effective search space used: 5589987125672 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)