ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2g18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_466908.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.2
2ref|XM_464427.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.2
3gb|BC028712.1| Homo sapiens ankyrin repeat domain 19, mRNA (cDNA... 40 4.2
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
5gb|AC084451.1|AC084451 Caenorhabditis briggsae cosmid CB023N02, ... 40 4.2
6dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
7dbj|AP004192.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
8dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
9dbj|AK120559.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2
10dbj|AK110819.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2
11dbj|AK072184.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2

>ref|XM_466908.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 5781

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 202  ctccttgttcgccagcttta 221
            ||||||||||||||||||||
Sbjct: 4869 ctccttgttcgccagcttta 4850



to top

>ref|XM_464427.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3544

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 193  ctttactgtctccttgttcg 212
            ||||||||||||||||||||
Sbjct: 2082 ctttactgtctccttgttcg 2063



to top

>gb|BC028712.1| Homo sapiens ankyrin repeat domain 19, mRNA (cDNA clone MGC:27029
            IMAGE:4837806), complete cds
          Length = 2351

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 150  acaagctctgaagactgtgg 169
            ||||||||||||||||||||
Sbjct: 2170 acaagctctgaagactgtgg 2151



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 202      ctccttgttcgccagcttta 221
                ||||||||||||||||||||
Sbjct: 25400959 ctccttgttcgccagcttta 25400978



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 193     ctttactgtctccttgttcg 212
               ||||||||||||||||||||
Sbjct: 5149219 ctttactgtctccttgttcg 5149200



to top

>gb|AC084451.1|AC084451 Caenorhabditis briggsae cosmid CB023N02, complete sequence
          Length = 79813

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    ctgatgaaatcgacacttgt 36
             ||||||||||||||||||||
Sbjct: 52048 ctgatgaaatcgacacttgt 52067



to top

>dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0453H10
          Length = 133464

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    ctttactgtctccttgttcg 212
              ||||||||||||||||||||
Sbjct: 109717 ctttactgtctccttgttcg 109698



to top

>dbj|AP004192.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1643_A10
          Length = 130037

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 202   ctccttgttcgccagcttta 221
             ||||||||||||||||||||
Sbjct: 56621 ctccttgttcgccagcttta 56640



to top

>dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0437H03
          Length = 170173

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   ctttactgtctccttgttcg 212
             ||||||||||||||||||||
Sbjct: 42672 ctttactgtctccttgttcg 42653



to top

>dbj|AK120559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131N16, full
            insert sequence
          Length = 5783

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 202  ctccttgttcgccagcttta 221
            ||||||||||||||||||||
Sbjct: 4871 ctccttgttcgccagcttta 4852



to top

>dbj|AK110819.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-G07, full
           insert sequence
          Length = 1697

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 ctttactgtctccttgttcg 212
           ||||||||||||||||||||
Sbjct: 652 ctttactgtctccttgttcg 633



to top

>dbj|AK072184.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013136H24, full
            insert sequence
          Length = 3544

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 193  ctttactgtctccttgttcg 212
            ||||||||||||||||||||
Sbjct: 2082 ctttactgtctccttgttcg 2063


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,054,244
Number of Sequences: 3902068
Number of extensions: 2054244
Number of successful extensions: 36047
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36012
Number of HSP's gapped (non-prelim): 35
length of query: 317
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 295
effective length of database: 17,147,199,772
effective search space: 5058423932740
effective search space used: 5058423932740
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top