Clone Name | basd2g15 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_470194.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1869 Score = 60.0 bits (30), Expect = 8e-06 Identities = 92/113 (81%) Strand = Plus / Minus Query: 395 aagaaaggacgggttttaactagggcgtcaaccatgatcctgttcaagctgnctcttagc 454 ||||| |||||| || ||| ||||| || ||||| | ||||||||||||| | ||| Sbjct: 1715 aagaatggacggcttcgaacaagggcatccaccataaccctgttcaagctgcccgttact 1656 Query: 455 ccgagccatcgcagtcttgggaacaatggtttcttaaaccaccgcatcgcaag 507 || |||||||||| ||||||||| |||||||||| |||||||| || ||||| Sbjct: 1655 cctagccatcgcaatcttgggaaatatggtttcttgaaccaccggattgcaag 1603 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 530 taaagatccagcagctgcaag 550 ||||||||||||||||||||| Sbjct: 1580 taaagatccagcagctgcaag 1560
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 60.0 bits (30), Expect = 8e-06 Identities = 92/113 (81%) Strand = Plus / Plus Query: 395 aagaaaggacgggttttaactagggcgtcaaccatgatcctgttcaagctgnctcttagc 454 ||||| |||||| || ||| ||||| || ||||| | ||||||||||||| | ||| Sbjct: 1937806 aagaatggacggcttcgaacaagggcatccaccataaccctgttcaagctgcccgttact 1937865 Query: 455 ccgagccatcgcagtcttgggaacaatggtttcttaaaccaccgcatcgcaag 507 || |||||||||| ||||||||| |||||||||| |||||||| || ||||| Sbjct: 1937866 cctagccatcgcaatcttgggaaatatggtttcttgaaccaccggattgcaag 1937918 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 530 taaagatccagcagctgcaag 550 ||||||||||||||||||||| Sbjct: 1937941 taaagatccagcagctgcaag 1937961
>gb|AC099399.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1006F06, complete sequence Length = 122218 Score = 60.0 bits (30), Expect = 8e-06 Identities = 92/113 (81%) Strand = Plus / Minus Query: 395 aagaaaggacgggttttaactagggcgtcaaccatgatcctgttcaagctgnctcttagc 454 ||||| |||||| || ||| ||||| || ||||| | ||||||||||||| | ||| Sbjct: 37605 aagaatggacggcttcgaacaagggcatccaccataaccctgttcaagctgcccgttact 37546 Query: 455 ccgagccatcgcagtcttgggaacaatggtttcttaaaccaccgcatcgcaag 507 || |||||||||| ||||||||| |||||||||| |||||||| || ||||| Sbjct: 37545 cctagccatcgcaatcttgggaaatatggtttcttgaaccaccggattgcaag 37493 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 530 taaagatccagcagctgcaag 550 ||||||||||||||||||||| Sbjct: 37470 taaagatccagcagctgcaag 37450
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 60.0 bits (30), Expect = 8e-06 Identities = 92/113 (81%) Strand = Plus / Plus Query: 395 aagaaaggacgggttttaactagggcgtcaaccatgatcctgttcaagctgnctcttagc 454 ||||| |||||| || ||| ||||| || ||||| | ||||||||||||| | ||| Sbjct: 1937804 aagaatggacggcttcgaacaagggcatccaccataaccctgttcaagctgcccgttact 1937863 Query: 455 ccgagccatcgcagtcttgggaacaatggtttcttaaaccaccgcatcgcaag 507 || |||||||||| ||||||||| |||||||||| |||||||| || ||||| Sbjct: 1937864 cctagccatcgcaatcttgggaaatatggtttcttgaaccaccggattgcaag 1937916 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 530 taaagatccagcagctgcaag 550 ||||||||||||||||||||| Sbjct: 1937939 taaagatccagcagctgcaag 1937959
>dbj|AK100737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118C14, full insert sequence Length = 2292 Score = 60.0 bits (30), Expect = 8e-06 Identities = 92/113 (81%) Strand = Plus / Minus Query: 395 aagaaaggacgggttttaactagggcgtcaaccatgatcctgttcaagctgnctcttagc 454 ||||| |||||| || ||| ||||| || ||||| | ||||||||||||| | ||| Sbjct: 1796 aagaatggacggcttcgaacaagggcatccaccataaccctgttcaagctgcccgttact 1737 Query: 455 ccgagccatcgcagtcttgggaacaatggtttcttaaaccaccgcatcgcaag 507 || |||||||||| ||||||||| |||||||||| |||||||| || ||||| Sbjct: 1736 cctagccatcgcaatcttgggaaatatggtttcttgaaccaccggattgcaag 1684 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 530 taaagatccagcagctgcaag 550 ||||||||||||||||||||| Sbjct: 1661 taaagatccagcagctgcaag 1641
>emb|AL136379.19| Human DNA sequence from clone RP5-881P19 on chromosome 1q42.11-42.3 Contains the WNT3A gene for wingless-type MMTV integration site family member 3A protein, a novel protein, the ARF1 gene for ADP-ribosylation factor 1 protein, a C1orf35 gene for chromosome 1 open reading frame 35, the MRPL55 gene for mitochondrial ribosomal protein L55, a novel processed pseudogene and six CpG islands, complete sequence Length = 127816 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 79 gccacatgcacacggaacaggcacat 104 ||||||||||||||| |||||||||| Sbjct: 89222 gccacatgcacacggcacaggcacat 89247
>gb|AC004916.2|AC004916 Homo sapiens PAC clone RP5-891L14 from 7p22, complete sequence Length = 129014 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 79 gccacatgcacacggaacaggcacat 104 ||||||||||||||| |||||||||| Sbjct: 24421 gccacatgcacacggcacaggcacat 24446
>gb|AY107148.1| Zea mays PCO064822 mRNA sequence Length = 684 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 531 aaagatccagcagctgcaaggt 552 |||||||||||||||||||||| Sbjct: 641 aaagatccagcagctgcaaggt 662
>emb|AL138816.12| Human DNA sequence from clone RP11-235O20 on chromosome 13 Contains the 3' end of the gene for a novel protein similar to heparan sulfate 6-sulfotransferase, complete sequence Length = 142420 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 ggaaatgtaacagcaagaaaa 127 ||||||||||||||||||||| Sbjct: 12955 ggaaatgtaacagcaagaaaa 12975
>gb|AC104763.12| Homo sapiens chromosome 17, clone RP11-3K24, complete sequence Length = 163418 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 193 tggggcaagcaaacatggctcacagcagc 221 |||||||||||| |||||||||| ||||| Sbjct: 41467 tggggcaagcaagcatggctcactgcagc 41495
>gb|AC073911.38| Homo sapiens 12 BAC RP11-386I8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 144266 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 201 gcaaacatggctcacagcagc 221 ||||||||||||||||||||| Sbjct: 101836 gcaaacatggctcacagcagc 101856
>emb|AL603926.6| Human DNA sequence from clone RP11-356L9 on chromosome 22, complete sequence Length = 180455 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 201 gcaaacatggctcacagcagc 221 ||||||||||||||||||||| Sbjct: 115834 gcaaacatggctcacagcagc 115854
>dbj|AP002827.4| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2589O24, complete sequence Length = 64281 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 461 catcgcagtcttgggaacaatggtt 485 |||| |||||||||||||||||||| Sbjct: 25215 catctcagtcttgggaacaatggtt 25239
>ref|XM_864554.1| PREDICTED: Bos taurus similar to Zinc finger and BTB domain containing protein 4 (KAISO-like zinc finger protein 1) (KAISO-L1) (LOC613607), mRNA Length = 2593 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 gtccccagctcctcgccgcc 381 |||||||||||||||||||| Sbjct: 1967 gtccccagctcctcgccgcc 1986
>ref|XM_748044.1| Aspergillus fumigatus Af293 C6 transcription factor (Afu1g17710) partial mRNA Length = 1290 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 532 aagatccagcagctgcaagg 551 |||||||||||||||||||| Sbjct: 963 aagatccagcagctgcaagg 944
>gb|AC145879.2| Pan troglodytes BAC clone RP43-20K4 from 7, complete sequence Length = 151392 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gaaatgtaacagcaagaaaa 127 |||||||||||||||||||| Sbjct: 80892 gaaatgtaacagcaagaaaa 80873
>gb|AC093461.4| Homo sapiens BAC clone RP11-764P14 from 7, complete sequence Length = 37408 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gaaatgtaacagcaagaaaa 127 |||||||||||||||||||| Sbjct: 13544 gaaatgtaacagcaagaaaa 13525
>emb|AL365338.17| Human DNA sequence from clone RP11-123N4 on chromosome 9 Contain the 3' end of the gene for rab6 GTPase activating protein (GAP and centrosome-associated) (GAPCENA), a pseudogene similar to part of thyroid receptor interacting protein 15 (TRIP15), the 3' end of the STRBP gene for spermatid perinuclear RNA binding protein (FLJ11307), a novel gene (GL012) and a CpG island, complete sequence Length = 150230 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 gtccaactgccagggctcaa 302 |||||||||||||||||||| Sbjct: 34756 gtccaactgccagggctcaa 34775
>emb|AL161772.17| Human DNA sequence from clone RP11-172H24 on chromosome 13 Contains the 3' end of the gene for polycystic kidney disease, autosomal recessive (Probe hTg737) (TG737), a novel pseudogene (FLJ124251 and FLJ14793), the 5' end of the IL17D gene for interleukin 17D and a CpG island, complete sequence Length = 125579 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 caaacatggctcacagcagc 221 |||||||||||||||||||| Sbjct: 53625 caaacatggctcacagcagc 53606
>emb|BX571813.8| Zebrafish DNA sequence from clone DKEY-14O6 in linkage group 3, complete sequence Length = 233901 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 acaagagaccaacacaagat 168 |||||||||||||||||||| Sbjct: 231838 acaagagaccaacacaagat 231819
>gb|AC123024.12| Homo sapiens 12 BAC RP11-264E13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 82875 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 58 atgatgtaacaacaaatgtttgcc 81 ||||| |||||||||||||||||| Sbjct: 43025 atgatttaacaacaaatgtttgcc 43002
>gb|AC123025.5| Homo sapiens 12 BAC RP11-642J16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 89119 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 58 atgatgtaacaacaaatgtttgcc 81 ||||| |||||||||||||||||| Sbjct: 51269 atgatttaacaacaaatgtttgcc 51246
>gb|AC094019.2| Homo sapiens chromosome 3 clone RP11-345J6, complete sequence Length = 198146 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 caaacatggctcacagcagc 221 |||||||||||||||||||| Sbjct: 104842 caaacatggctcacagcagc 104823
>gb|AC020907.6| Homo sapiens chromosome 19 clone CTD-2527I21, complete sequence Length = 169891 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 caaacatggctcacagcagc 221 |||||||||||||||||||| Sbjct: 40530 caaacatggctcacagcagc 40549
>gb|AC104827.4| Homo sapiens BAC clone RP11-778J15 from 4, complete sequence Length = 157262 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gcaaacatggctcacagcag 220 |||||||||||||||||||| Sbjct: 67022 gcaaacatggctcacagcag 67003
>gb|AC079807.5| Homo sapiens BAC clone RP11-760G15 from 2, complete sequence Length = 156175 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 caaacatggctcacagcagc 221 |||||||||||||||||||| Sbjct: 6931 caaacatggctcacagcagc 6912
>emb|CR759833.23| Zebrafish DNA sequence from clone DKEYP-4F2 in linkage group 14, complete sequence Length = 157355 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 acaagagaccaacacaagat 168 |||||||||||||||||||| Sbjct: 79283 acaagagaccaacacaagat 79264
>gb|AC007172.6|AC007172 Homo sapiens chromosome 9, clone hRPK.538_E_7, complete sequence Length = 168535 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 gtccaactgccagggctcaa 302 |||||||||||||||||||| Sbjct: 122131 gtccaactgccagggctcaa 122112 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,041,881 Number of Sequences: 3902068 Number of extensions: 4041881 Number of successful extensions: 72734 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72642 Number of HSP's gapped (non-prelim): 92 length of query: 552 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 529 effective length of database: 17,143,297,704 effective search space: 9068804485416 effective search space used: 9068804485416 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)