Clone Name | basd2g14 |
---|---|
Clone Library Name | barley_pub |
>Y5161_ARATH (Q9M015) Protein At5g01610| Length = 170 Score = 35.0 bits (79), Expect = 0.10 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 7/103 (6%) Frame = +2 Query: 152 ELLAETNLPLGLLPLADIEEVGYNRATGFVWLRQKKALTHTFKQI-------GRQVSYAT 310 ELL E +LP+G+ P AT + + + K LT I + + T Sbjct: 56 ELLKEYDLPIGIFP---------GDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTT 106 Query: 311 EVTAFVEDRKMKRMTGVKSKELLIWITLCDMYIDKDDPSKITF 439 VT +E K+ + G+K+K ++IW+ + + D SK+ F Sbjct: 107 TVTGHLEKGKLTDVEGIKTK-VMIWVKVTSI---STDASKVYF 145
>RLUB_PSEAE (Q9HZ55) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 386 Score = 32.7 bits (73), Expect = 0.50 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Frame = +1 Query: 220 QPRHRLRLASPEEGA-HAHLQADREAGLVRHRGDGLRRGPQDEAHDRGQEQGTPHLDHP 393 Q R R PE G A + D E R RGPQ A +G+EQGTP + P Sbjct: 279 QARPLARSERPEAGRKRAPRREDGENAARRAPASRPARGPQPSAERKGREQGTPVAERP 337
>HNRPL_HUMAN (P14866) Heterogeneous nuclear ribonucleoprotein L (hnRNP L)| Length = 558 Score = 28.5 bits (62), Expect(2) = 0.74 Identities = 17/55 (30%), Positives = 20/55 (36%) Frame = +1 Query: 229 HRLRLASPEEGAHAHLQADREAGLVRHRGDGLRRGPQDEAHDRGQEQGTPHLDHP 393 H P G H+H D G +G R GP H RG + P HP Sbjct: 282 HPAEYGGPHGGYHSHYH-DEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHP 335 Score = 22.3 bits (46), Expect(2) = 0.74 Identities = 12/36 (33%), Positives = 17/36 (47%) Frame = +2 Query: 68 VEMAQAIEAQREGAEVYHGAALCAEKAVELLAETNL 175 V+ AQ +A GA++Y G C +E T L Sbjct: 210 VQSAQRAKASLNGADIYSG---CCTLKIEYAKPTRL 242
>HNRPL_MOUSE (Q8R081) Heterogeneous nuclear ribonucleoprotein L (hnRNP L)| Length = 555 Score = 28.5 bits (62), Expect(2) = 0.74 Identities = 17/55 (30%), Positives = 20/55 (36%) Frame = +1 Query: 229 HRLRLASPEEGAHAHLQADREAGLVRHRGDGLRRGPQDEAHDRGQEQGTPHLDHP 393 H P G H+H D G +G R GP H RG + P HP Sbjct: 279 HPAEYGGPHGGYHSHYH-DEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHP 332 Score = 22.3 bits (46), Expect(2) = 0.74 Identities = 12/36 (33%), Positives = 17/36 (47%) Frame = +2 Query: 68 VEMAQAIEAQREGAEVYHGAALCAEKAVELLAETNL 175 V+ AQ +A GA++Y G C +E T L Sbjct: 207 VQSAQRAKASLNGADIYSG---CCTLKIEYAKPTRL 239
>SYFB_SYNPX (Q7U6V9) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 814 Score = 30.8 bits (68), Expect = 1.9 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 6/119 (5%) Frame = +2 Query: 62 QPVEMAQ-AIEAQREGAEVY--HGAALCAEKAVELLAETNLPLGLLPLADIEEVGYNRAT 232 +PV A + REG G L +++ +LP+ L + + G AT Sbjct: 284 KPVNAASFGLRQAREGEAFIGLDGRELSLVARAQVVTCHDLPIALAGVMGSKASGVTAAT 343 Query: 233 GFVWLRQKKALTHTFKQIGRQVSYATEVTAFVEDRKMKRMT---GVKSKELLIWITLCD 400 G +WL + R V T+ +A E K MT +++ ELL + C+ Sbjct: 344 GRIWLESAMFSPAAVRTTARSVGLRTDASARFEKGLPKEMTLACSIRALELLKELFPCE 402
>Y1162_THEMA (Q9X0P5) UPF0173 metal-dependent hydrolase TM1162| Length = 226 Score = 29.3 bits (64), Expect = 5.5 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +2 Query: 101 EGAEVYHGAALCAEKAVELLAETNLPLGLLPL 196 EG ++YH + +ELLAE N+ + LP+ Sbjct: 132 EGKKIYHAGDTGLTREMELLAEENVDVAFLPI 163
>RF1_MYCPN (P75420) Peptide chain release factor 1 (RF-1)| Length = 359 Score = 29.3 bits (64), Expect = 5.5 Identities = 22/79 (27%), Positives = 34/79 (43%) Frame = +2 Query: 140 EKAVELLAETNLPLGLLPLADIEEVGYNRATGFVWLRQKKALTHTFKQIGRQVSYATEVT 319 EK VEL + L L + N+ L+ K+ L FK+ R + A E Sbjct: 12 EKIVELAEQLEKDLNKPDLTFEQIKAINKE-----LKHKQPLVVKFKEFKRLIDQALEAE 66 Query: 320 AFVEDRKMKRMTGVKSKEL 376 A +E+ ++K + KEL Sbjct: 67 AILENNELKELHDEAKKEL 85
>GATA_STRCO (Q9Z580) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 497 Score = 29.3 bits (64), Expect = 5.5 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +1 Query: 229 HRLRLASPEEGAHAHLQADREAGLVRHRGDGLRRGPQDEAHDRGQEQG 372 H R+ + +E HA L DRE L + R DE +RG++ G Sbjct: 30 HLARIEAVDEKVHAFLHVDREGALAQARA-------VDEKRERGEKLG 70
>OPT3_CAEEL (O01840) Putative oligopeptide transporter opt-3| Length = 701 Score = 29.3 bits (64), Expect = 5.5 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Frame = -3 Query: 456 SPVGVLKVILEGSSLSMYISQRVIQMRSSLLLTPVMRFILRSST--KAVTSVAYETCLPI 283 S G KVIL GSS+ Y+ V+ SL P + + +RSS + +A+ T Sbjct: 77 SVFGRFKVILYGSSI--YVVGHVLL---SLGAVPFLSYPIRSSLDFSGLFVIAFATG--- 128 Query: 282 CLKVCVSAF 256 C+K CVSAF Sbjct: 129 CIKPCVSAF 137
>GATA_STRAW (Q82JL0) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 501 Score = 28.9 bits (63), Expect = 7.2 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +1 Query: 229 HRLRLASPEEGAHAHLQADREAGLVRHRGDGLRRGPQDEAHDRGQEQG 372 H R+ + +E HA L DRE L + R DE +RG++ G Sbjct: 34 HLARIDAVDEKVHAFLHVDREGALAQARA-------VDEKRERGEKLG 74
>GRK6_RAT (P97711) G protein-coupled receptor kinase 6 (EC 2.7.11.16) (G| protein-coupled receptor kinase GRK6) Length = 576 Score = 28.9 bits (63), Expect = 7.2 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +2 Query: 134 CAEKAVELLAETNLPLGLLPLAD-IEEVGYNRATGFVWLRQKKALTHTFKQ 283 C + EL T+ L + P AD ++ + +NR + WL ++ +TF+Q Sbjct: 138 CKDLFQELTRLTHEYLSMAPFADYLDSIYFNRFLQWKWLERQPVTKNTFRQ 188
>CTTB2_HUMAN (Q8WZ74) Cortactin-binding protein 2 (CortBP2)| Length = 1663 Score = 28.5 bits (62), Expect = 9.4 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 2/77 (2%) Frame = -3 Query: 444 VLKVILEGSSLSMYISQRVIQMR--SSLLLTPVMRFILRSSTKAVTSVAYETCLPICLKV 271 + K L+GS L + R +Q+R + + RF+ R A C P+C V Sbjct: 1249 IAKACLQGSDLLVQQHFRWVQLRWDGEPMQGLLQRFLRRKVVNKFKGQAPSPCDPVCKIV 1308 Query: 270 CVSAFFWRSQTKPVARL 220 + WR +ARL Sbjct: 1309 DWALSVWRQLNSCLARL 1325
>BIRA_BACSU (P42975) BirA bifunctional protein [Includes: Biotin operon| repressor; Biotin--[acetyl-CoA-carboxylase] synthetase (EC 6.3.4.15) (Biotin--protein ligase)] Length = 325 Score = 28.5 bits (62), Expect = 9.4 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +2 Query: 113 VYHGAALCAEKAVELLAETNLPLGLLPLADIEEVGYNRATGFVWLRQK 256 +YH +K LA N P G L +AD + G R + VW Q+ Sbjct: 87 IYHDVLSSTQKTAHELANNNAPEGTLVVADKQTAGRGRMSR-VWHSQE 133
>RRMJ2_DROME (Q9VDD9) Putative ribosomal RNA methyltransferase CG7009 (EC| 2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) Length = 320 Score = 28.5 bits (62), Expect = 9.4 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 10/87 (11%) Frame = -3 Query: 471 GKVLLSPVGVLKVILEGSSLSMYISQRVIQMRSSLLLTPVMRFIL----------RSSTK 322 G++LLS + + ILE ++S+ R+S L T + RF R+S+ Sbjct: 139 GELLLSALSISTFILEEGG--SFVSKIYRADRTSRLYTQLKRFFKNVCVFKPSASRNSSI 196 Query: 321 AVTSVAYETCLPICLKVCVSAFFWRSQ 241 VA E CLP K C W Q Sbjct: 197 EAFVVAREFCLPDGYKPCNLTTEWHDQ 223
>GYRA_MYCFV (Q49166) DNA gyrase subunit A (EC 5.99.1.3) [Contains: Mfl gyrA| intein] (Fragment) Length = 554 Score = 28.5 bits (62), Expect = 9.4 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = -2 Query: 70 DWLNESNLSK*TQIQLDGLELLG 2 DWLN N+ + ++ Q DG E+LG Sbjct: 412 DWLNRHNIDRLSRWQRDGAEILG 434
>MMTA2_HUMAN (Q9BU76) Multiple myeloma tumor-associated protein 2 (hMMTAG2)| Length = 263 Score = 28.5 bits (62), Expect = 9.4 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%) Frame = +1 Query: 247 SPEEGAHAHLQADREAGLVRHRG---DGLRRGPQDEAHDRGQE 366 SPE H H +D + + R G RR P HDRG E Sbjct: 220 SPERPRHHHHDSDSNSPCCKRRKRGHSGDRRSPSRRWHDRGSE 262
>GRK6_HUMAN (P43250) G protein-coupled receptor kinase 6 (EC 2.7.11.16) (G| protein-coupled receptor kinase GRK6) Length = 576 Score = 28.5 bits (62), Expect = 9.4 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +2 Query: 134 CAEKAVELLAETNLPLGLLPLAD-IEEVGYNRATGFVWLRQKKALTHTFKQ 283 C + EL T+ L + P AD ++ + +NR + WL ++ +TF+Q Sbjct: 138 CKDLFQELTRLTHEYLSVAPFADYLDSIYFNRFLQWKWLERQPVTKNTFRQ 188 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,181,552 Number of Sequences: 219361 Number of extensions: 869370 Number of successful extensions: 3261 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3214 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3260 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)