>Y5161_ARATH (Q9M015) Protein At5g01610|
          Length = 170

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
 Frame = +2

Query: 152 ELLAETNLPLGLLPLADIEEVGYNRATGFVWLRQKKALTHTFKQI-------GRQVSYAT 310
           ELL E +LP+G+ P           AT + +  + K LT     I          + + T
Sbjct: 56  ELLKEYDLPIGIFP---------GDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTT 106

Query: 311 EVTAFVEDRKMKRMTGVKSKELLIWITLCDMYIDKDDPSKITF 439
            VT  +E  K+  + G+K+K ++IW+ +  +     D SK+ F
Sbjct: 107 TVTGHLEKGKLTDVEGIKTK-VMIWVKVTSI---STDASKVYF 145

>RLUB_PSEAE (Q9HZ55) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 386

 Score = 32.7 bits (73), Expect = 0.50
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +1

Query: 220 QPRHRLRLASPEEGA-HAHLQADREAGLVRHRGDGLRRGPQDEAHDRGQEQGTPHLDHP 393
           Q R   R   PE G   A  + D E    R       RGPQ  A  +G+EQGTP  + P
Sbjct: 279 QARPLARSERPEAGRKRAPRREDGENAARRAPASRPARGPQPSAERKGREQGTPVAERP 337

>HNRPL_HUMAN (P14866) Heterogeneous nuclear ribonucleoprotein L (hnRNP L)|
          Length = 558

 Score = 28.5 bits (62), Expect(2) = 0.74
 Identities = 17/55 (30%), Positives = 20/55 (36%)
 Frame = +1

Query: 229 HRLRLASPEEGAHAHLQADREAGLVRHRGDGLRRGPQDEAHDRGQEQGTPHLDHP 393
           H      P  G H+H   D   G      +G R GP    H RG  +  P   HP
Sbjct: 282 HPAEYGGPHGGYHSHYH-DEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHP 335



 Score = 22.3 bits (46), Expect(2) = 0.74
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 68  VEMAQAIEAQREGAEVYHGAALCAEKAVELLAETNL 175
           V+ AQ  +A   GA++Y G   C    +E    T L
Sbjct: 210 VQSAQRAKASLNGADIYSG---CCTLKIEYAKPTRL 242

>HNRPL_MOUSE (Q8R081) Heterogeneous nuclear ribonucleoprotein L (hnRNP L)|
          Length = 555

 Score = 28.5 bits (62), Expect(2) = 0.74
 Identities = 17/55 (30%), Positives = 20/55 (36%)
 Frame = +1

Query: 229 HRLRLASPEEGAHAHLQADREAGLVRHRGDGLRRGPQDEAHDRGQEQGTPHLDHP 393
           H      P  G H+H   D   G      +G R GP    H RG  +  P   HP
Sbjct: 279 HPAEYGGPHGGYHSHYH-DEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHP 332



 Score = 22.3 bits (46), Expect(2) = 0.74
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 68  VEMAQAIEAQREGAEVYHGAALCAEKAVELLAETNL 175
           V+ AQ  +A   GA++Y G   C    +E    T L
Sbjct: 207 VQSAQRAKASLNGADIYSG---CCTLKIEYAKPTRL 239

>SYFB_SYNPX (Q7U6V9) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 814

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 6/119 (5%)
 Frame = +2

Query: 62  QPVEMAQ-AIEAQREGAEVY--HGAALCAEKAVELLAETNLPLGLLPLADIEEVGYNRAT 232
           +PV  A   +   REG       G  L      +++   +LP+ L  +   +  G   AT
Sbjct: 284 KPVNAASFGLRQAREGEAFIGLDGRELSLVARAQVVTCHDLPIALAGVMGSKASGVTAAT 343

Query: 233 GFVWLRQKKALTHTFKQIGRQVSYATEVTAFVEDRKMKRMT---GVKSKELLIWITLCD 400
           G +WL          +   R V   T+ +A  E    K MT    +++ ELL  +  C+
Sbjct: 344 GRIWLESAMFSPAAVRTTARSVGLRTDASARFEKGLPKEMTLACSIRALELLKELFPCE 402

>Y1162_THEMA (Q9X0P5) UPF0173 metal-dependent hydrolase TM1162|
          Length = 226

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 101 EGAEVYHGAALCAEKAVELLAETNLPLGLLPL 196
           EG ++YH       + +ELLAE N+ +  LP+
Sbjct: 132 EGKKIYHAGDTGLTREMELLAEENVDVAFLPI 163

>RF1_MYCPN (P75420) Peptide chain release factor 1 (RF-1)|
          Length = 359

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 22/79 (27%), Positives = 34/79 (43%)
 Frame = +2

Query: 140 EKAVELLAETNLPLGLLPLADIEEVGYNRATGFVWLRQKKALTHTFKQIGRQVSYATEVT 319
           EK VEL  +    L    L   +    N+      L+ K+ L   FK+  R +  A E  
Sbjct: 12  EKIVELAEQLEKDLNKPDLTFEQIKAINKE-----LKHKQPLVVKFKEFKRLIDQALEAE 66

Query: 320 AFVEDRKMKRMTGVKSKEL 376
           A +E+ ++K +     KEL
Sbjct: 67  AILENNELKELHDEAKKEL 85

>GATA_STRCO (Q9Z580) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 497

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 229 HRLRLASPEEGAHAHLQADREAGLVRHRGDGLRRGPQDEAHDRGQEQG 372
           H  R+ + +E  HA L  DRE  L + R         DE  +RG++ G
Sbjct: 30  HLARIEAVDEKVHAFLHVDREGALAQARA-------VDEKRERGEKLG 70

>OPT3_CAEEL (O01840) Putative oligopeptide transporter opt-3|
          Length = 701

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = -3

Query: 456 SPVGVLKVILEGSSLSMYISQRVIQMRSSLLLTPVMRFILRSST--KAVTSVAYETCLPI 283
           S  G  KVIL GSS+  Y+   V+    SL   P + + +RSS     +  +A+ T    
Sbjct: 77  SVFGRFKVILYGSSI--YVVGHVLL---SLGAVPFLSYPIRSSLDFSGLFVIAFATG--- 128

Query: 282 CLKVCVSAF 256
           C+K CVSAF
Sbjct: 129 CIKPCVSAF 137

>GATA_STRAW (Q82JL0) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 501

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 229 HRLRLASPEEGAHAHLQADREAGLVRHRGDGLRRGPQDEAHDRGQEQG 372
           H  R+ + +E  HA L  DRE  L + R         DE  +RG++ G
Sbjct: 34  HLARIDAVDEKVHAFLHVDREGALAQARA-------VDEKRERGEKLG 74

>GRK6_RAT (P97711) G protein-coupled receptor kinase 6 (EC 2.7.11.16) (G|
           protein-coupled receptor kinase GRK6)
          Length = 576

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 134 CAEKAVELLAETNLPLGLLPLAD-IEEVGYNRATGFVWLRQKKALTHTFKQ 283
           C +   EL   T+  L + P AD ++ + +NR   + WL ++    +TF+Q
Sbjct: 138 CKDLFQELTRLTHEYLSMAPFADYLDSIYFNRFLQWKWLERQPVTKNTFRQ 188

>CTTB2_HUMAN (Q8WZ74) Cortactin-binding protein 2 (CortBP2)|
          Length = 1663

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
 Frame = -3

Query: 444  VLKVILEGSSLSMYISQRVIQMR--SSLLLTPVMRFILRSSTKAVTSVAYETCLPICLKV 271
            + K  L+GS L +    R +Q+R     +   + RF+ R         A   C P+C  V
Sbjct: 1249 IAKACLQGSDLLVQQHFRWVQLRWDGEPMQGLLQRFLRRKVVNKFKGQAPSPCDPVCKIV 1308

Query: 270  CVSAFFWRSQTKPVARL 220
              +   WR     +ARL
Sbjct: 1309 DWALSVWRQLNSCLARL 1325

>BIRA_BACSU (P42975) BirA bifunctional protein [Includes: Biotin operon|
           repressor; Biotin--[acetyl-CoA-carboxylase] synthetase
           (EC 6.3.4.15) (Biotin--protein ligase)]
          Length = 325

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 113 VYHGAALCAEKAVELLAETNLPLGLLPLADIEEVGYNRATGFVWLRQK 256
           +YH      +K    LA  N P G L +AD +  G  R +  VW  Q+
Sbjct: 87  IYHDVLSSTQKTAHELANNNAPEGTLVVADKQTAGRGRMSR-VWHSQE 133

>RRMJ2_DROME (Q9VDD9) Putative ribosomal RNA methyltransferase CG7009 (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase)
          Length = 320

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
 Frame = -3

Query: 471 GKVLLSPVGVLKVILEGSSLSMYISQRVIQMRSSLLLTPVMRFIL----------RSSTK 322
           G++LLS + +   ILE      ++S+     R+S L T + RF            R+S+ 
Sbjct: 139 GELLLSALSISTFILEEGG--SFVSKIYRADRTSRLYTQLKRFFKNVCVFKPSASRNSSI 196

Query: 321 AVTSVAYETCLPICLKVCVSAFFWRSQ 241
               VA E CLP   K C     W  Q
Sbjct: 197 EAFVVAREFCLPDGYKPCNLTTEWHDQ 223

>GYRA_MYCFV (Q49166) DNA gyrase subunit A (EC 5.99.1.3) [Contains: Mfl gyrA|
           intein] (Fragment)
          Length = 554

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 70  DWLNESNLSK*TQIQLDGLELLG 2
           DWLN  N+ + ++ Q DG E+LG
Sbjct: 412 DWLNRHNIDRLSRWQRDGAEILG 434

>MMTA2_HUMAN (Q9BU76) Multiple myeloma tumor-associated protein 2 (hMMTAG2)|
          Length = 263

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
 Frame = +1

Query: 247 SPEEGAHAHLQADREAGLVRHRG---DGLRRGPQDEAHDRGQE 366
           SPE   H H  +D  +   + R     G RR P    HDRG E
Sbjct: 220 SPERPRHHHHDSDSNSPCCKRRKRGHSGDRRSPSRRWHDRGSE 262

>GRK6_HUMAN (P43250) G protein-coupled receptor kinase 6 (EC 2.7.11.16) (G|
           protein-coupled receptor kinase GRK6)
          Length = 576

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 134 CAEKAVELLAETNLPLGLLPLAD-IEEVGYNRATGFVWLRQKKALTHTFKQ 283
           C +   EL   T+  L + P AD ++ + +NR   + WL ++    +TF+Q
Sbjct: 138 CKDLFQELTRLTHEYLSVAPFADYLDSIYFNRFLQWKWLERQPVTKNTFRQ 188


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,181,552
Number of Sequences: 219361
Number of extensions: 869370
Number of successful extensions: 3261
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3260
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)