ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ADEN_ADEB4 (O71150) Adenain (EC 3.4.22.39) (Endoprotease) (Late ... 30 3.5
2CDR3_CANAL (O42690) Opaque-specific ABC transporter CDR3 30 4.5
3Y4587_PSEPK (Q88E79) UPF0260 protein PP4587 30 4.5
4GLO2_BUCBP (Q89AN4) Probable hydroxyacylglutathione hydrolase (E... 29 5.9
5Y3918_PSESM (Q87Y85) UPF0260 protein PSPTO3918 29 5.9

>ADEN_ADEB4 (O71150) Adenain (EC 3.4.22.39) (Endoprotease) (Late L3 23 kDa|
           protein)
          Length = 201

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 392 RNLNDASPAQRPCDPSSYHESSD 324
           ++LN ASP+  P DPSS H++ D
Sbjct: 147 QSLNGASPSLTPSDPSSLHKNQD 169



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>CDR3_CANAL (O42690) Opaque-specific ABC transporter CDR3|
          Length = 1501

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 54   TNAGRHRGRATWLILPVVICLSQRLSHACASMNQFEL*NCEWL 182
            + A  HRG   WLI+ ++   S  L+  C S NQ       W+
Sbjct: 1288 SGAVTHRGVLMWLIMTLMFIYSSTLAQFCISWNQLADYAANWI 1330



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>Y4587_PSEPK (Q88E79) UPF0260 protein PP4587|
          Length = 150

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 8   GCCLCVSMQVEPEDDNQCWTSSRTCYLVD 94
           GC LC   ++E EDDN  + +   C L+D
Sbjct: 29  GCGLCCLQKLEDEDDNSVYYTRIACKLLD 57



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>GLO2_BUCBP (Q89AN4) Probable hydroxyacylglutathione hydrolase (EC 3.1.2.6)|
           (Glyoxalase II) (Glx II)
          Length = 249

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +2

Query: 50  DNQCW---TSSRTCYLVDPASSHMLVSKIK 130
           DN  W    SS+ C ++DP  S+ ++ KIK
Sbjct: 11  DNYVWIMFNSSKDCIIIDPGESNSVIKKIK 40



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>Y3918_PSESM (Q87Y85) UPF0260 protein PSPTO3918|
          Length = 149

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 8   GCCLCVSMQVEPEDDNQCWTSSRTCYLVDPASSHMLVSKIKPCMC 142
           GC LC   ++E E+DN  + +   C L+D          +K C C
Sbjct: 28  GCGLCCLQKLEDEEDNSVYYTRIACKLLD----------LKTCQC 62


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,465,050
Number of Sequences: 219361
Number of extensions: 1344234
Number of successful extensions: 2993
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2993
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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