Clone Name	basd2g09
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	912	0.0
2	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	912	0.0
3	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	817	0.0
4	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	620	e-175
5	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	601	e-169
6	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	601	e-169
7	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	517	e-143
8	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	517	e-143
9	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	517	e-143
10	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	517	e-143
11	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	517	e-143
12	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	517	e-143
13	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	509	e-141
14	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	498	e-138
15	gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c...	436	e-119
16	gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA...	408	e-111
17	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	383	e-103
18	gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox...	329	5e-87
19	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	311	1e-81
20	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	311	1e-81
21	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	303	3e-79
22	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	270	4e-69
23	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	270	4e-69
24	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	270	4e-69
25	gb|AY110044.1| Zea mays CL1146_1 mRNA sequence	270	4e-69
26	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	270	4e-69
27	gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosph...	264	2e-67
28	gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox...	242	9e-61
29	gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ...	238	1e-59
30	gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carb...	236	5e-59
31	gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosph...	228	1e-56
32	gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precur...	226	5e-56
33	gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precurso...	226	5e-56
34	ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	224	2e-55
35	ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	224	2e-55
36	ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	224	2e-55
37	gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890)...	224	2e-55
38	gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730...	224	2e-55
39	gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, comp...	224	2e-55
40	gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, compl...	224	2e-55
41	gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, compl...	224	2e-55
42	gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730...	224	2e-55
43	gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete se...	224	2e-55
44	gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec...	218	1e-53
45	gb|AY312575.1| Larrea tridentata Rubisco activase alpha form pre...	218	1e-53
46	gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds	214	2e-52
47	gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA...	210	3e-51
48	gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1...	204	2e-49
49	gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, c...	202	7e-49
50	emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase	194	2e-46
51	gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase m...	192	7e-46
52	emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphospha...	188	1e-44
53	emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car...	167	4e-38
54	gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence	163	6e-37
55	emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubis...	163	6e-37
56	gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, part...	105	1e-19
57	gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/...	105	1e-19
58	gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate...	103	5e-19
59	gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precur...	96	1e-16
60	emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase	94	5e-16
61	gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map ...	86	1e-13
62	gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphospha...	86	1e-13
63	gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete s...	80	7e-12
64	gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete se...	78	3e-11
65	gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete se...	78	3e-11
66	emb|Y10657.1|CLRCAGENE C.littorale rca gene	66	1e-07
67	gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate car...	54	4e-04
68	gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) ...	46	0.10
69	gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ...	46	0.10
70	gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome	44	0.41
71	gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome	40	6.4
72	gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of t...	40	6.4
73	gb|CP000110.1| Synechococcus sp. CC9605, complete genome	40	6.4
74	ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867...	40	6.4
75	gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence	40	6.4
76	gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome	40	6.4
77	ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-ass...	40	6.4
78	gb|AC009991.5|ATAC009991 Arabidopsis thaliana chromosome III BAC...	40	6.4
79	gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, com...	40	6.4
80	emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chr...	40	6.4
81	gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, co...	40	6.4
82	gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, comple...	40	6.4
83	gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, co...	40	6.4
84	gb|AE009524.1| Brucella melitensis 16M chromosome I, section 81 ...	40	6.4
85	gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds	40	6.4
86	dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome	40	6.4
87	gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I...	40	6.4
88	ref|XM_312558.2| Anopheles gambiae str. PEST ENSANGP00000014302 ...	40	6.4
89	emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chr...	40	6.4
90	emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,...	40	6.4
91	gb|U51683.1|BAU51683 Brucella abortus phosphatidate cytidyltrans...	40	6.4
92	emb|AL627188.18| Mouse DNA sequence from clone RP23-113G7 on chr...	40	6.4
93	gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila No...	40	6.4

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  912 bits (460), Expect = 0.0
 Identities = 469/472 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagg 328

                                                                       
Query: 62  gtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtgg 121
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gtcttgctaccgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtgg 388

                                                                       
Query: 122 actcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 actcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacg 448

                                                                       
Query: 182 agtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctaca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 agtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctaca 508

                                                                       
Query: 242 tcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgc 568

                                                                       
Query: 302 ccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcat 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcat 628

                                                                       
Query: 362 tccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggag 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggag 688

                                                               
Query: 422 agctggagagtgggaacgctggagagccagccaagctcatcaggcagcggta 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 agctggagagtgggaacgctggagagccagccaagctcatcaggcagcggta 740

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  912 bits (460), Expect = 0.0
 Identities = 469/472 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14  ggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagg 73

                                                                       
Query: 62  gtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtgg 121
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  gtcttgctaccgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtgg 133

                                                                       
Query: 122 actcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 actcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacg 193

                                                                       
Query: 182 agtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctaca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 agtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctaca 253

                                                                       
Query: 242 tcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgc 313

                                                                       
Query: 302 ccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcat 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcat 373

                                                                       
Query: 362 tccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggag 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggag 433

                                                               
Query: 422 agctggagagtgggaacgctggagagccagccaagctcatcaggcagcggta 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agctggagagtgggaacgctggagagccagccaagctcatcaggcagcggta 485

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  817 bits (412), Expect = 0.0
 Identities = 457/472 (96%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagg 61
           ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 189 ggttcacggtcatggcagcggaaaacatcgacgagaagaggaacaccgacaagtggaagg 248

                                                                       
Query: 62  gtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtgg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtgg 308

                                                                       
Query: 122 actcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacg 181
           |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 309 actccctcttccaggcgcccactggcgacggcacccacgaggccgtcctcagctcatacg 368

                                                                       
Query: 182 agtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctaca 241
           |||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 369 agtacgtcagccagggactcaagaagtacgacttcgacaacaccatgggaggcttctaca 428

                                                                       
Query: 242 tcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgc 301
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 429 tcgctcctgctttcatggacaagcttgttgtccatctctccaagaacttcatgaccctgc 488

                                                                       
Query: 302 ccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcat 361
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 489 ccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcct 548

                                                                       
Query: 362 tccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggag 421
           |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 549 tccagtgtgagcttgtcttcgccaagatgggcatcaacccaatcatgatgagtgccggag 608

                                                               
Query: 422 agctggagagtgggaacgctggagagccagccaagctcatcaggcagcggta 473
           ||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 609 agctggagagtggcaacgccggagagccagccaagctcatcaggcagcggta 660

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  620 bits (313), Expect = e-175
 Identities = 397/425 (93%)
 Strand = Plus / Plus

                                                                       
Query: 49  gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 108
           |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316

                                                                       
Query: 109 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 168
           ||||| ||||| ||||| || ||||||||||||| |||||| ||||||||||||||||||
Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgaggccgtc 376

                                                                       
Query: 169 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 228
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 377 ctcagctcctacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 436

                                                                       
Query: 229 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 288
           ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| |||
Sbjct: 437 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 496

                                                                       
Query: 289 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 497 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggaaagggt 556

                                                                       
Query: 349 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 408
           || || ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 557 caggggaaatccttccagtgtgagcttgtcttcgccaagatgggcatcaacccaatcatg 616

                                                                       
Query: 409 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 468
           ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 617 atgagtgccggagagctggagagcggcaacgccggagagccagccaagctcatcaggcag 676

                
Query: 469 cggta 473
           |||||
Sbjct: 677 cggta 681

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  601 bits (303), Expect = e-169
 Identities = 394/425 (92%)
 Strand = Plus / Plus

                                                                       
Query: 49  gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 108
           |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306

                                                                       
Query: 109 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 168
           ||||| ||||| |||||  | ||||||||||||| |||||| || |||||||||||||||
Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgaggccgtc 366

                                                                       
Query: 169 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 228
           |||||||| |||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 367 ctcagctcntacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 426

                                                                       
Query: 229 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 288
           ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| |||
Sbjct: 427 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 486

                                                                       
Query: 289 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 487 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggaaagggt 546

                                                                       
Query: 349 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 408
           || || ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 547 caggggaaatccttccagtgtgagcttgtcttcgccaagatgggcatcaacccaatcatg 606

                                                                       
Query: 409 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 468
           ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 607 atgagtgccggagagctggagagcggcaacgccggagagccagccaagctcatcaggcag 666

                
Query: 469 cggta 473
           |||||
Sbjct: 667 cggta 671

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  601 bits (303), Expect = e-169
 Identities = 309/311 (99%)
 Strand = Plus / Plus

                                                                        
Query: 2    ggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagg 61
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5610 ggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagg 5669

                                                                        
Query: 62   gtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtgg 121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5670 gtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtgg 5729

                                                                        
Query: 122  actcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacg 181
            |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 5730 actcgctcttccaggcgcccacggggcacggcacccacgaggccgtcctcagctcctacg 5789

                                                                        
Query: 182  agtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctaca 241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5790 agtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctaca 5849

                                                                        
Query: 242  tcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgc 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5850 tcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgc 5909

                       
Query: 302  ccaacatcaag 312
            |||||||||||
Sbjct: 5910 ccaacatcaag 5920



 Score =  408 bits (206), Expect = e-111
 Identities = 335/378 (88%)
 Strand = Plus / Plus

                                                                        
Query: 54   gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 113
            |||||||||||| || ||||| ||||| ||||||||||||||||||||  | ||||| ||
Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998

                                                                        
Query: 114  catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 173
            |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| ||
Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 3058

                                                                        
Query: 174  ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 233
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 3059 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 3118

                                                                        
Query: 234  cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 293
              | |||||||| || || ||||||||||||||  | ||||| ||| |||| ||||||||
Sbjct: 3119 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 3178

                                                                        
Query: 294  gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 353
            ||| || |||||||||||| | || |||||| |||||||||||||||||||||| || ||
Sbjct: 3179 gacactccccaacatcaaggttcctctcatcctgggtatctggggaggcaagggacaggg 3238

                                                                        
Query: 354  aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgag 413
             || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 3239 caagtcgttccagtgtgagctggtgttcgccaagatgggcatcaaccccatcatgatgag 3298

                              
Query: 414  tgccggagagctggagag 431
             ||||| |||||||||||
Sbjct: 3299 cgccggtgagctggagag 3316



 Score =  174 bits (88), Expect = 2e-40
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                        
Query: 311  agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6070 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 6129

                                        
Query: 371  agcttgtgttcgccaagatgggcatcaa 398
            ||||||||||||||||||||||||||||
Sbjct: 6130 agcttgtgttcgccaagatgggcatcaa 6157



 Score =  149 bits (75), Expect = 1e-32
 Identities = 75/75 (100%)
 Strand = Plus / Plus

                                                                        
Query: 399  ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 458
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6408 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 6467

                           
Query: 459  catcaggcagcggta 473
            |||||||||||||||
Sbjct: 6468 catcaggcagcggta 6482

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for
           ribulose-bisphosphate carboxylase activase large isoform
           precursor protein, complete cds, clone: 13YPR038
          Length = 1558

 Score =  517 bits (261), Expect = e-143
 Identities = 384/425 (90%)
 Strand = Plus / Plus

                                                                       
Query: 49  gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 108
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263

                                                                       
Query: 109 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 168
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 323

                                                                       
Query: 169 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 228
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 324 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 383

                                                                       
Query: 229 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 288
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 384 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 443

                                                                       
Query: 289 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 348
           ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 444 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 503

                                                                       
Query: 349 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 408
           || |||||||| |||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 504 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 563

                                                                       
Query: 409 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 468
           ||||| ||||||||||||||||| || ||||| |||||||| || ||||| |||||||||
Sbjct: 564 atgagcgccggagagctggagagcggcaacgccggagagccggcgaagctgatcaggcag 623

                
Query: 469 cggta 473
           |||||
Sbjct: 624 cggta 628

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
           insert sequence
          Length = 1680

 Score =  517 bits (261), Expect = e-143
 Identities = 384/425 (90%)
 Strand = Plus / Plus

                                                                       
Query: 49  gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 108
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300

                                                                       
Query: 109 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 168
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 360

                                                                       
Query: 169 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 228
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 361 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 420

                                                                       
Query: 229 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 288
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 421 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 480

                                                                       
Query: 289 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 348
           ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 481 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 540

                                                                       
Query: 349 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 408
           || |||||||| |||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 541 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 600

                                                                       
Query: 409 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 468
           ||||| ||||||||||||||||| || ||||| |||||||| || ||||| |||||||||
Sbjct: 601 atgagcgccggagagctggagagcggcaacgccggagagccggcgaagctgatcaggcag 660

                
Query: 469 cggta 473
           |||||
Sbjct: 661 cggta 665

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
           insert sequence
          Length = 1691

 Score =  517 bits (261), Expect = e-143
 Identities = 384/425 (90%)
 Strand = Plus / Plus

                                                                       
Query: 49  gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 108
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299

                                                                       
Query: 109 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 168
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 359

                                                                       
Query: 169 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 228
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 360 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 419

                                                                       
Query: 229 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 288
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 420 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 479

                                                                       
Query: 289 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 348
           ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 480 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 539

                                                                       
Query: 349 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 408
           || |||||||| |||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 540 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 599

                                                                       
Query: 409 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 468
           ||||| ||||||||||||||||| || ||||| |||||||| || ||||| |||||||||
Sbjct: 600 atgagcgccggagagctggagagcggcaacgccggagagccggcgaagctgatcaggcag 659

                
Query: 469 cggta 473
           |||||
Sbjct: 660 cggta 664

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
           insert sequence
          Length = 1470

 Score =  517 bits (261), Expect = e-143
 Identities = 384/425 (90%)
 Strand = Plus / Plus

                                                                       
Query: 49  gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 108
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 24  gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83

                                                                       
Query: 109 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 168
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 84  aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 143

                                                                       
Query: 169 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 228
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 144 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 203

                                                                       
Query: 229 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 288
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 204 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 263

                                                                       
Query: 289 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 348
           ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 264 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 323

                                                                       
Query: 349 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 408
           || |||||||| |||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 324 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 383

                                                                       
Query: 409 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 468
           ||||| ||||||||||||||||| || ||||| |||||||| || ||||| |||||||||
Sbjct: 384 atgagcgccggagagctggagagcggcaacgccggagagccggcgaagctgatcaggcag 443

                
Query: 469 cggta 473
           |||||
Sbjct: 444 cggta 448

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
           precursor, complete cds
          Length = 1706

 Score =  517 bits (261), Expect = e-143
 Identities = 384/425 (90%)
 Strand = Plus / Plus

                                                                       
Query: 49  gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 108
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304

                                                                       
Query: 109 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 168
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 364

                                                                       
Query: 169 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 228
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 365 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 424

                                                                       
Query: 229 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 288
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 425 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 484

                                                                       
Query: 289 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 348
           ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 485 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 544

                                                                       
Query: 349 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 408
           || |||||||| |||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 545 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 604

                                                                       
Query: 409 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 468
           ||||| ||||||||||||||||| || ||||| |||||||| || ||||| |||||||||
Sbjct: 605 atgagcgccggagagctggagagcggcaacgccggagagccggcgaagctgatcaggcag 664

                
Query: 469 cggta 473
           |||||
Sbjct: 665 cggta 669

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
           precursor, complete cds
          Length = 1623

 Score =  517 bits (261), Expect = e-143
 Identities = 384/425 (90%)
 Strand = Plus / Plus

                                                                       
Query: 49  gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 108
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298

                                                                       
Query: 109 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 168
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 358

                                                                       
Query: 169 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 228
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 359 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 418

                                                                       
Query: 229 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 288
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 419 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 478

                                                                       
Query: 289 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 348
           ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 479 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 538

                                                                       
Query: 349 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 408
           || |||||||| |||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 539 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 598

                                                                       
Query: 409 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 468
           ||||| ||||||||||||||||| || ||||| |||||||| || ||||| |||||||||
Sbjct: 599 atgagcgccggagagctggagagcggcaacgccggagagccggcgaagctgatcaggcag 658

                
Query: 469 cggta 473
           |||||
Sbjct: 659 cggta 663

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
           insert sequence
          Length = 1721

 Score =  509 bits (257), Expect = e-141
 Identities = 383/425 (90%)
 Strand = Plus / Plus

                                                                       
Query: 49  gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 108
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311

                                                                       
Query: 109 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 168
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 371

                                                                       
Query: 169 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 228
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 372 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 431

                                                                       
Query: 229 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 288
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 432 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 491

                                                                       
Query: 289 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 348
           ||||||||||| |||||||||||| ||||||||| | |||||||||||||||||||||||
Sbjct: 492 ttcatgaccctccccaacatcaaggtcccactcaccctgggtatctggggaggcaagggt 551

                                                                       
Query: 349 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 408
           || |||||||| |||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 552 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 611

                                                                       
Query: 409 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 468
           ||||| ||||||||||||||||| || ||||| |||||||| || ||||| |||||||||
Sbjct: 612 atgagcgccggagagctggagagcggcaacgccggagagccggcgaagctgatcaggcag 671

                
Query: 469 cggta 473
           |||||
Sbjct: 672 cggta 676

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase (rca) mRNA, complete cds
          Length = 1675

 Score =  498 bits (251), Expect = e-138
 Identities = 382/425 (89%), Gaps = 3/425 (0%)
 Strand = Plus / Plus

                                                                       
Query: 49  gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 108
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271

                                                                       
Query: 109 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 168
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 331

                                                                       
Query: 169 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 228
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 332 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 391

                                                                       
Query: 229 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 288
           ||||||||||||||||| ||| |||||||||||||||| || |||||  ||||||| |||
Sbjct: 392 ggaggcttctacatcgccccttctttcatggacaagctcgtcgtccacatctccaagaac 451

                                                                       
Query: 289 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 348
           ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 452 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 511

                                                                       
Query: 349 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 408
           || |||||||| |||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 512 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 571

                                                                       
Query: 409 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 468
           ||||| ||||||||||||||||| || |||   |||||||| |||||||| |||||||||
Sbjct: 572 atgagcgccggagagctggagagcggcaac---ggagagccggccaagctgatcaggcag 628

                
Query: 469 cggta 473
           |||||
Sbjct: 629 cggta 633

---

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B
           (RcaB) mRNA, complete cds; nuclear gene for chloroplast
           product
          Length = 1525

 Score =  436 bits (220), Expect = e-119
 Identities = 370/420 (88%)
 Strand = Plus / Plus

                                                                       
Query: 54  gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 113
           |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| ||
Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276

                                                                       
Query: 114 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 173
           |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| ||
Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctgag 336

                                                                       
Query: 174 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 233
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||  ||
Sbjct: 337 ctcctacgagtacatcagccagggcctgcgcaagtacgacttcgacaacaccatggacgg 396

                                                                       
Query: 234 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 293
             | |||||||| || || ||||||||||||||  | ||||| ||| |||| ||||||||
Sbjct: 397 gctgtacatcgccccggcgttcatggacaagctcatcgtccacctcgccaagaacttcat 456

                                                                       
Query: 294 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 353
           ||| || |||||||||||| |||| |||||| |||||||||||||||||||||| || ||
Sbjct: 457 gacactccccaacatcaaggtccctctcatcctgggtatctggggaggcaagggacaggg 516

                                                                       
Query: 354 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgag 413
            || || |||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 517 caagtcgttccagtgcgagctggtgttcgccaagatgggcatcaaccccatcatgatgag 576

                                                                       
Query: 414 tgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcagcggta 473
            ||||||||||||||||| || ||||| || ||||| |||||||| ||| ||||| ||||
Sbjct: 577 cgccggagagctggagagcggcaacgccggcgagccggccaagctgatccggcagaggta 636

---

>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score =  408 bits (206), Expect = e-111
 Identities = 335/378 (88%)
 Strand = Plus / Plus

                                                                       
Query: 54  gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 113
           |||||||||||| || ||||| ||||| ||||||||||||||||||||  | ||||| ||
Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429

                                                                       
Query: 114 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 173
           |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| ||
Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 489

                                                                       
Query: 174 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 233
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 490 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 549

                                                                       
Query: 234 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 293
             | |||||||| || || ||||||||||||||  | ||||| ||| |||| ||||||||
Sbjct: 550 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 609

                                                                       
Query: 294 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 353
           ||| || |||||||||||| | || |||||| |||||||||||||||||||||| || ||
Sbjct: 610 gacactccccaacatcaaggttcctctcatcctgggtatctggggaggcaagggacaggg 669

                                                                       
Query: 354 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgag 413
            || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 670 caagtcgttccagtgtgagctggtgttcgccaagatgggcatcaaccccatcatgatgag 729

                             
Query: 414 tgccggagagctggagag 431
            ||||| |||||||||||
Sbjct: 730 cgccggtgagctggagag 747

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
           insert sequence
          Length = 1682

 Score =  383 bits (193), Expect = e-103
 Identities = 274/301 (91%)
 Strand = Plus / Plus

                                                                       
Query: 173 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggag 232
           |||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||||||
Sbjct: 327 gctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggag 386

                                                                       
Query: 233 gcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttca 292
           ||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||||||
Sbjct: 387 gcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaacttca 446

                                                                       
Query: 293 tgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaag 352
           ||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| |
Sbjct: 447 tgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggtcagg 506

                                                                       
Query: 353 gaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatga 412
           ||||||| |||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct: 507 gaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatgatga 566

                                                                       
Query: 413 gtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcagcggt 472
           | ||||||||||||||||| || ||||| |||||||| || ||||| |||||||||||||
Sbjct: 567 gcgccggagagctggagagcggcaacgccggagagccggcgaagctgatcaggcagcggt 626

            
Query: 473 a 473
           |
Sbjct: 627 a 627



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 78/89 (87%)
 Strand = Plus / Plus

                                                                       
Query: 49  gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 108
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299

                                        
Query: 109 aagggcatcgtggactcgctcttccaggc 137
           |||||  |||| ||||| || ||||||||
Sbjct: 300 aagggtttcgtcgactcccttttccaggc 328

---

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
           precursor (rca1) mRNA, complete cds
          Length = 1424

 Score =  329 bits (166), Expect = 5e-87
 Identities = 358/422 (84%)
 Strand = Plus / Plus

                                                                       
Query: 49  gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 108
           |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || 
Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272

                                                                       
Query: 109 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 168
           |||||| |||| |||   |||||||||||||| | ||| |||||||||||||  ||||| 
Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacgtcgccgtg 332

                                                                       
Query: 169 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 228
           |||||||||||||| ||| ||||||||||||    |   ||| ||||||||||||  |||
Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392

                                                                       
Query: 229 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 288
           |  ||||||||||| ||    |  |||||||||||||| || ||||| |||||||| |||
Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452

                                                                       
Query: 289 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 348
           |||||||||||||| ||||||||| | || |||||| ||||||||||||||||||| || 
Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatcctgggtatctggggaggcaaaggc 512

                                                                       
Query: 349 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 408
           || |||||||| ||||| || ||||| || ||||||||||||||||||| ||||||||||
Sbjct: 513 cagggaaaatcgttccaatgcgagctggtcttcgccaagatgggcatcacccccatcatg 572

                                                                       
Query: 409 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 468
           ||||| ||||| ||||||||||| || ||||| |||||||| ||||||||||||||||||
Sbjct: 573 atgagcgccggcgagctggagagcggcaacgccggagagcccgccaagctcatcaggcag 632

             
Query: 469 cg 470
           ||
Sbjct: 633 cg 634

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score =  311 bits (157), Expect = 1e-81
 Identities = 331/389 (85%)
 Strand = Plus / Plus

                                                                       
Query: 85  gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 144
           |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| |
Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294

                                                                       
Query: 145 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 204
           |||||||| |||||| |  ||||||| ||||||||||||||| |||||   || || || 
Sbjct: 295 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 354

                                                                       
Query: 205 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 264
             || | |||| ||||||||| ||   || || ||||||||||| || ||||||||||||
Sbjct: 355 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 414

                                                                       
Query: 265 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 324
           ||||| || ||  || |||| |||||||||| | |||||||||||||||| || ||||| 
Sbjct: 415 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 474

                                                                       
Query: 325 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcc 384
           |||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 475 ttgggtatctggggaggcaaaggtcaagggaaatccttccaatgtgaacttgtgttcgcc 534

                                                                       
Query: 385 aagatgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgctgga 444
           |||||||| |||||||||||||||||||| ||||| ||||||||||| || ||||| |||
Sbjct: 535 aagatgggaatcaaccccatcatgatgagcgccggtgagctggagagcggcaacgccgga 594

                                        
Query: 445 gagccagccaagctcatcaggcagcggta 473
           ||||| || ||||| ||| ||||||||||
Sbjct: 595 gagccggcgaagctgatccggcagcggta 623

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score =  311 bits (157), Expect = 1e-81
 Identities = 331/389 (85%)
 Strand = Plus / Plus

                                                                       
Query: 85  gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 144
           |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| |
Sbjct: 98  gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157

                                                                       
Query: 145 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 204
           |||||||| |||||| |  ||||||| ||||||||||||||| |||||   || || || 
Sbjct: 158 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 217

                                                                       
Query: 205 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 264
             || | |||| ||||||||| ||   || || ||||||||||| || ||||||||||||
Sbjct: 218 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 277

                                                                       
Query: 265 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 324
           ||||| || ||  || |||| |||||||||| | |||||||||||||||| || ||||| 
Sbjct: 278 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 337

                                                                       
Query: 325 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcc 384
           |||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 338 ttgggtatctggggaggcaaaggtcaagggaaatccttccaatgtgaacttgtgttcgcc 397

                                                                       
Query: 385 aagatgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgctgga 444
           |||||||| |||||||||||||||||||| ||||| ||||||||||| || ||||| |||
Sbjct: 398 aagatgggaatcaaccccatcatgatgagcgccggtgagctggagagcggcaacgccgga 457

                                        
Query: 445 gagccagccaagctcatcaggcagcggta 473
           ||||| || ||||| ||| ||||||||||
Sbjct: 458 gagccggcgaagctgatccggcagcggta 486

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score =  303 bits (153), Expect = 3e-79
 Identities = 330/389 (84%)
 Strand = Plus / Plus

                                                                       
Query: 85  gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 144
           |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| |
Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187

                                                                       
Query: 145 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 204
           |||||||| |||||| |  ||||||| ||||||||||||||| |||||   || || || 
Sbjct: 188 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 247

                                                                       
Query: 205 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 264
             || | |||| ||||||||| ||   || || ||||||||||| || ||||||||||||
Sbjct: 248 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 307

                                                                       
Query: 265 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 324
           ||||| || ||  || |||| |||||||||| | |||||||||||||||| || ||||| 
Sbjct: 308 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 367

                                                                       
Query: 325 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcc 384
           |||||||||||||||||||| ||||| || ||||| ||||| ||||| ||||||||||||
Sbjct: 368 ttgggtatctggggaggcaaaggtcaggggaaatccttccaatgtgaacttgtgttcgcc 427

                                                                       
Query: 385 aagatgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgctgga 444
           |||||||| |||||||||||||||||||| ||||| ||||||||||| || ||||| |||
Sbjct: 428 aagatgggaatcaaccccatcatgatgagcgccggtgagctggagagcggcaacgccgga 487

                                        
Query: 445 gagccagccaagctcatcaggcagcggta 473
           ||||| || ||||| ||| ||||||||||
Sbjct: 488 gagccggcgaagctgatccggcagcggta 516

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  270 bits (136), Expect = 4e-69
 Identities = 178/192 (92%)
 Strand = Plus / Minus

                                                                          
Query: 207    gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 266
              ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 109435 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 109376

                                                                          
Query: 267    tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 326
               || |||||  ||||||| |||||||||||||| |||||||||||| ||||||||||| |
Sbjct: 109375 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 109316

                                                                          
Query: 327    gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 386
              |||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||
Sbjct: 109315 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 109256

                          
Query: 387    gatgggcatcaa 398
              |||||| |||||
Sbjct: 109255 gatggggatcaa 109244



 Score =  176 bits (89), Expect = 4e-41
 Identities = 134/149 (89%)
 Strand = Plus / Minus

                                                                          
Query: 49     gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 108
              |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647

                                                                          
Query: 109    aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 168
              |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 109587

                                           
Query: 169    ctcagctcctacgagtacgtcagccaggg 197
              |||||||||||||||||| ||||||||||
Sbjct: 109586 ctcagctcctacgagtacctcagccaggg 109558



 Score =  125 bits (63), Expect = 1e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                          
Query: 54     gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 113
              ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146

                                                                 
Query: 114    catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 164
              | |||| ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                          
Query: 399    ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 458
              ||||||||||||||| ||||||||||||||||| || ||||| |||||||| || |||||
Sbjct: 109158 ccccatcatgatgagcgccggagagctggagagcggcaacgccggagagccggcgaagct 109099

                             
Query: 459    catcaggcagcggta 473
               ||||||||||||||
Sbjct: 109098 gatcaggcagcggta 109084



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 361    ttccagtgtgagcttgtgttcgccaagatgggcatcaa 398
              ||||||||||| || || |||||||||||||| |||||
Sbjct: 112906 ttccagtgtgatctcgtcttcgccaagatggggatcaa 112869

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  270 bits (136), Expect = 4e-69
 Identities = 178/192 (92%)
 Strand = Plus / Minus

                                                                         
Query: 207   gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 266
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 31312 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 31253

                                                                         
Query: 267   tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 326
              || |||||  ||||||| |||||||||||||| |||||||||||| ||||||||||| |
Sbjct: 31252 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 31193

                                                                         
Query: 327   gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 386
             |||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||
Sbjct: 31192 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 31133

                         
Query: 387   gatgggcatcaa 398
             |||||| |||||
Sbjct: 31132 gatggggatcaa 31121



 Score =  176 bits (89), Expect = 4e-41
 Identities = 134/149 (89%)
 Strand = Plus / Minus

                                                                         
Query: 49    gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 108
             |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524

                                                                         
Query: 109   aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 168
             |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 31464

                                          
Query: 169   ctcagctcctacgagtacgtcagccaggg 197
             |||||||||||||||||| ||||||||||
Sbjct: 31463 ctcagctcctacgagtacctcagccaggg 31435



 Score =  125 bits (63), Expect = 1e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                         
Query: 54    gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 113
             ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023

                                                                
Query: 114   catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 164
             | |||| ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                         
Query: 399   ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 458
             ||||||||||||||| ||||||||||||||||| || ||||| |||||||| || |||||
Sbjct: 31035 ccccatcatgatgagcgccggagagctggagagcggcaacgccggagagccggcgaagct 30976

                            
Query: 459   catcaggcagcggta 473
              ||||||||||||||
Sbjct: 30975 gatcaggcagcggta 30961



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 361   ttccagtgtgagcttgtgttcgccaagatgggcatcaa 398
             ||||||||||| || || |||||||||||||| |||||
Sbjct: 34783 ttccagtgtgatctcgtcttcgccaagatggggatcaa 34746

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  270 bits (136), Expect = 4e-69
 Identities = 178/192 (92%)
 Strand = Plus / Minus

                                                                            
Query: 207      gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 266
                ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 28304574 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28304515

                                                                            
Query: 267      tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 326
                 || |||||  ||||||| |||||||||||||| |||||||||||| ||||||||||| |
Sbjct: 28304514 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28304455

                                                                            
Query: 327      gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 386
                |||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||
Sbjct: 28304454 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 28304395

                            
Query: 387      gatgggcatcaa 398
                |||||| |||||
Sbjct: 28304394 gatggggatcaa 28304383



 Score =  176 bits (89), Expect = 4e-41
 Identities = 134/149 (89%)
 Strand = Plus / Minus

                                                                            
Query: 49       gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 108
                |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786

                                                                            
Query: 109      aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 168
                |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28304726

                                             
Query: 169      ctcagctcctacgagtacgtcagccaggg 197
                |||||||||||||||||| ||||||||||
Sbjct: 28304725 ctcagctcctacgagtacctcagccaggg 28304697



 Score =  125 bits (63), Expect = 1e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                            
Query: 54       gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 113
                ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285

                                                                   
Query: 114      catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 164
                | |||| ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                            
Query: 399      ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 458
                ||||||||||||||| ||||||||||||||||| || ||||| |||||||| || |||||
Sbjct: 28304297 ccccatcatgatgagcgccggagagctggagagcggcaacgccggagagccggcgaagct 28304238

                               
Query: 459      catcaggcagcggta 473
                 ||||||||||||||
Sbjct: 28304237 gatcaggcagcggta 28304223



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 361      ttccagtgtgagcttgtgttcgccaagatgggcatcaa 398
                ||||||||||| || || |||||||||||||| |||||
Sbjct: 28308045 ttccagtgtgatctcgtcttcgccaagatggggatcaa 28308008

---

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score =  270 bits (136), Expect = 4e-69
 Identities = 348/422 (82%)
 Strand = Plus / Plus

                                                                       
Query: 49  gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 108
           |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || 
Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272

                                                                       
Query: 109 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 168
           |||||| |||| |||   |||||||||||||| |      ||||||||||||  ||||| 
Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatnnnnnacggcacccacgtcgccgtg 332

                                                                       
Query: 169 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 228
           |||||||||||||| ||| ||||||||||||    |   ||| ||||||||||||  |||
Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392

                                                                       
Query: 229 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 288
           |  ||||||||||| ||    |  |||||||||||||| || ||||| |||||||| |||
Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452

                                                                       
Query: 289 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 348
           |||||||||||||| ||||||||| | || |||||| ||||||||  ||||||||| || 
Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatcctgggtatcgtgggaggcaaaggc 512

                                                                       
Query: 349 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 408
           || |||||||| ||||| || ||||| || |||||||||||||||||||     ||||||
Sbjct: 513 cagggaaaatcgttccaatgcgagctggtcttcgccaagatgggcatcannnnnatcatg 572

                                                                       
Query: 409 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 468
           ||||| ||||| ||||||||||| || ||||| |||||||| ||||||||||||||||||
Sbjct: 573 atgagcgccggcgagctggagagcggcaacgccggagagcccgccaagctcatcaggcag 632

             
Query: 469 cg 470
           ||
Sbjct: 633 cg 634

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  270 bits (136), Expect = 4e-69
 Identities = 178/192 (92%)
 Strand = Plus / Minus

                                                                            
Query: 207      gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 266
                ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 28287023 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28286964

                                                                            
Query: 267      tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 326
                 || |||||  ||||||| |||||||||||||| |||||||||||| ||||||||||| |
Sbjct: 28286963 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28286904

                                                                            
Query: 327      gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 386
                |||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||
Sbjct: 28286903 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 28286844

                            
Query: 387      gatgggcatcaa 398
                |||||| |||||
Sbjct: 28286843 gatggggatcaa 28286832



 Score =  176 bits (89), Expect = 4e-41
 Identities = 134/149 (89%)
 Strand = Plus / Minus

                                                                            
Query: 49       gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 108
                |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235

                                                                            
Query: 109      aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 168
                |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28287175

                                             
Query: 169      ctcagctcctacgagtacgtcagccaggg 197
                |||||||||||||||||| ||||||||||
Sbjct: 28287174 ctcagctcctacgagtacctcagccaggg 28287146



 Score =  125 bits (63), Expect = 1e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                            
Query: 54       gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 113
                ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734

                                                                   
Query: 114      catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 164
                | |||| ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                            
Query: 399      ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 458
                ||||||||||||||| ||||||||||||||||| || ||||| |||||||| || |||||
Sbjct: 28286746 ccccatcatgatgagcgccggagagctggagagcggcaacgccggagagccggcgaagct 28286687

                               
Query: 459      catcaggcagcggta 473
                 ||||||||||||||
Sbjct: 28286686 gatcaggcagcggta 28286672



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 361      ttccagtgtgagcttgtgttcgccaagatgggcatcaa 398
                ||||||||||| || || |||||||||||||| |||||
Sbjct: 28290494 ttccagtgtgatctcgtcttcgccaagatggggatcaa 28290457

---

>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 1 mRNA, complete cds
          Length = 1559

 Score =  264 bits (133), Expect = 2e-67
 Identities = 343/413 (83%)
 Strand = Plus / Plus

                                                                       
Query: 55  tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggc 114
           |||||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| || 
Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaaaggt 339

                                                                       
Query: 115 atcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 174
           || || |||||  | ||||| || |||| |  ||| || || ||| | || ||| | |||
Sbjct: 340 atggtcgactcattgttccaagctcccatgaacgatggtactcactatgctgtcatgagc 399

                                                                       
Query: 175 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 234
           ||||| |||||| | ||||| ||||| || |  |||||||| ||||||| |||||  || 
Sbjct: 400 tcctatgagtacattagccaaggccttcgcacatacgacttggacaacaacatggatgga 459

                                                                       
Query: 235 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 294
           |||||||| || || ||||||||||||||||||||||| ||  || |||| |||| ||||
Sbjct: 460 ttctacattgccccagctttcatggacaagcttgttgttcacatcaccaagaactacatg 519

                                                                       
Query: 295 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 354
           ||||| || ||||| ||| | || || ||||||||||| ||||||||||| |||||||||
Sbjct: 520 acccttcctaacattaaggttcctcttatcttgggtatttggggaggcaaaggtcaagga 579

                                                                       
Query: 355 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 414
           ||||| ||||| ||||||||||| || ||||||||||| ||||||||||| |||||||||
Sbjct: 580 aaatctttccaatgtgagcttgtctttgccaagatgggaatcaaccccattatgatgagt 639

                                                                
Query: 415 gccggagagctggagagtgggaacgctggagagccagccaagctcatcaggca 467
           ||||||||  |||| ||||||||||| ||||| ||||||||| | ||||||||
Sbjct: 640 gccggagaattggaaagtgggaacgccggagaaccagccaagttgatcaggca 692

---

>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score =  242 bits (122), Expect = 9e-61
 Identities = 194/218 (88%)
 Strand = Plus / Plus

                                                                       
Query: 253 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 312
           |||||||||||||| || ||||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 22  ttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaacatcaag 81

                                                                       
Query: 313 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 372
            | || |||||| ||||||||||||||||||| || || |||||||| ||||| || |||
Sbjct: 82  gttcccctcatcctgggtatctggggaggcaaaggccagggaaaatcgttccaatgcgag 141

                                                                       
Query: 373 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggagagt 432
           || || ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| 
Sbjct: 142 ctggtcttcgccaagatgggcatcacccccatcatgatgagcgccggcgagctggagagc 201

                                                 
Query: 433 gggaacgctggagagccagccaagctcatcaggcagcg 470
           || ||||| |||||||| ||||||||||||||||||||
Sbjct: 202 ggcaacgccggagagcccgccaagctcatcaggcagcg 239

---

>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score =  238 bits (120), Expect = 1e-59
 Identities = 207/236 (87%)
 Strand = Plus / Plus

                                                                       
Query: 238 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 297
           ||||||||||| || ||||||||||||||||| || ||  || |||| |||||||||| |
Sbjct: 87  tacatcgctccggccttcatggacaagcttgtcgttcacatcaccaagaacttcatgaac 146

                                                                       
Query: 298 ctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaa 357
            |||||||||||||||| || ||||| |||||||||||||||||||| ||||| || |||
Sbjct: 147 ttgcccaacatcaagattcctctcattttgggtatctggggaggcaaaggtcaggggaaa 206

                                                                       
Query: 358 tcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgcc 417
           || ||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 207 tccttccaatgtgaacttgtgttcgccaagatgggaatcaaccccatcatgatgagcgcc 266

                                                                   
Query: 418 ggagagctggagagtgggaacgctggagagccagccaagctcatcaggcagcggta 473
           || ||||||||||| || ||||| |||||||| || ||||| ||| ||||||||||
Sbjct: 267 ggtgagctggagagcggcaacgccggagagccggcgaagctgatccggcagcggta 322

---

>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase alpha 2 mRNA, complete cds
          Length = 1433

 Score =  236 bits (119), Expect = 5e-59
 Identities = 218/251 (86%)
 Strand = Plus / Plus

                                                                       
Query: 217 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 276
           ||||||| |||||  || |||||||| |||||||| |||||||||||||||||||| || 
Sbjct: 256 gacaacaacatggatggtttctacattgctcctgcattcatggacaagcttgttgttcac 315

                                                                       
Query: 277 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 336
            || |||| ||||||||| |||| || ||||| ||| | || || ||||||||||| |||
Sbjct: 316 atcaccaagaacttcatgtccctccctaacattaaggttcctctaatcttgggtatttgg 375

                                                                       
Query: 337 ggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatc 396
           |||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| |||
Sbjct: 376 ggaggcaaaggtcaaggaaaatctttccaatgtgagcttgtgtttgccaagatgggtatc 435

                                                                       
Query: 397 aaccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaag 456
           |||||||||||||||||||||||||| ||||| ||||| ||||| || || |||||||||
Sbjct: 436 aaccccatcatgatgagtgccggagaactggaaagtggaaacgccggtgaaccagccaag 495

                      
Query: 457 ctcatcaggca 467
            | ||||||||
Sbjct: 496 ttgatcaggca 506

---

>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 2 mRNA, partial cds
          Length = 1462

 Score =  228 bits (115), Expect = 1e-56
 Identities = 217/251 (86%)
 Strand = Plus / Plus

                                                                       
Query: 217 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 276
           ||||||| |||||  || ||||||||||||||||| |||||||||||||||||||| || 
Sbjct: 257 gacaacaacatggatggtttctacatcgctcctgcattcatggacaagcttgttgttcac 316

                                                                       
Query: 277 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 336
            ||  ||| ||||||||| |||| || ||||| ||| | || || ||| ||||||| |||
Sbjct: 317 atcagcaagaacttcatgtccctccctaacattaaggttcctctaatcctgggtatttgg 376

                                                                       
Query: 337 ggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatc 396
           |||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| |||
Sbjct: 377 ggaggcaaaggtcaaggaaaatctttccaatgtgagcttgtgtttgccaagatgggtatc 436

                                                                       
Query: 397 aaccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaag 456
           |||||||||||||||||||||||||| ||||| ||||| ||||| || || |||||||||
Sbjct: 437 aaccccatcatgatgagtgccggagaactggaaagtggaaacgccggtgaaccagccaag 496

                      
Query: 457 ctcatcaggca 467
            | ||||||||
Sbjct: 497 ttgatcaggca 507

---

>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds
          Length = 1634

 Score =  226 bits (114), Expect = 5e-56
 Identities = 207/238 (86%)
 Strand = Plus / Plus

                                                                       
Query: 235 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 294
           |||||||| ||||| |||||||||||||||||||| || ||  || ||||||||||||||
Sbjct: 476 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 535

                                                                       
Query: 295 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 354
           || || |||||||| ||| | || ||||| ||||||||||||||||| || |||||||| 
Sbjct: 536 actctccccaacataaaggttcctctcattttgggtatctggggaggtaaaggtcaaggt 595

                                                                       
Query: 355 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 414
           ||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct: 596 aaatctttccagtgtgagcttgtctttgccaagatgggaatcaaccccatcatgatgagt 655

                                                                     
Query: 415 gccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcagcggt 472
           ||||||||  ||||||| || ||||| |||||||| || ||| | |||||||| ||||
Sbjct: 656 gccggagaattggagagcggcaacgcaggagagcccgcgaagttgatcaggcaacggt 713

---

>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete
           cds
          Length = 1674

 Score =  226 bits (114), Expect = 5e-56
 Identities = 240/282 (85%)
 Strand = Plus / Plus

                                                                       
Query: 175 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 234
           |||||||| ||||||||||| || || ||  ||||| |||| |||||||   |||  || 
Sbjct: 396 tcctacgaatacgtcagccaaggtcttcgccagtacaacttggacaacaagttggacgga 455

                                                                       
Query: 235 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 294
           |||||||||||||||||||||||||||||||||||||| ||  || |||| |||||| ||
Sbjct: 456 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttg 515

                                                                       
Query: 295 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 354
           |   |||||||||||||| | ||||| ||||||||||||||||||||||| |||||||| 
Sbjct: 516 aaattgcccaacatcaaggttccacttatcttgggtatctggggaggcaaaggtcaaggc 575

                                                                       
Query: 355 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 414
           ||||||||||||||||| ||||| |||   |||||||| ||||||||||| |||||||||
Sbjct: 576 aaatcattccagtgtgaacttgtcttcagaaagatgggaatcaaccccattatgatgagt 635

                                                     
Query: 415 gccggagagctggagagtgggaacgctggagagccagccaag 456
           || |||||  |||| ||||| || || |||||||||||||||
Sbjct: 636 gctggagaattggaaagtggaaatgcaggagagccagccaag 677

---

>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
           transcript variant AT2G39730.2 mRNA, complete cds
          Length = 1815

 Score =  224 bits (113), Expect = 2e-55
 Identities = 239/281 (85%)
 Strand = Plus / Plus

                                                                       
Query: 166 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 225
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555

                                                                       
Query: 226 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 285
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615

                                                                       
Query: 286 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 345
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| 
Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 675

                                                                       
Query: 346 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 405
           |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||| |||
Sbjct: 676 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 735

                                                    
Query: 406 atgatgagtgccggagagctggagagtgggaacgctggaga 446
           ||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 736 atgatgagtgctggagagcttgagagtggaaacgcaggaga 776

---

>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
           transcript variant AT2G39730.3 mRNA, complete cds
          Length = 1928

 Score =  224 bits (113), Expect = 2e-55
 Identities = 239/281 (85%)
 Strand = Plus / Plus

                                                                       
Query: 166 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 225
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555

                                                                       
Query: 226 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 285
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615

                                                                       
Query: 286 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 345
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| 
Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 675

                                                                       
Query: 346 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 405
           |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||| |||
Sbjct: 676 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 735

                                                    
Query: 406 atgatgagtgccggagagctggagagtgggaacgctggaga 446
           ||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 736 atgatgagtgctggagagcttgagagtggaaacgcaggaga 776

---

>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
           transcript variant AT2G39730.1 mRNA, complete cds
          Length = 1833

 Score =  224 bits (113), Expect = 2e-55
 Identities = 239/281 (85%)
 Strand = Plus / Plus

                                                                       
Query: 166 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 225
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584

                                                                       
Query: 226 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 285
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644

                                                                       
Query: 286 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 345
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| 
Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 704

                                                                       
Query: 346 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 405
           |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||| |||
Sbjct: 705 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 764

                                                    
Query: 406 atgatgagtgccggagagctggagagtgggaacgctggaga 446
           ||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 765 atgatgagtgctggagagcttgagagtggaaacgcaggaga 805

---

>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein
           (At2g39730) mRNA, complete cds
          Length = 1697

 Score =  224 bits (113), Expect = 2e-55
 Identities = 239/281 (85%)
 Strand = Plus / Plus

                                                                       
Query: 166 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 225
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466

                                                                       
Query: 226 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 285
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526

                                                                       
Query: 286 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 345
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| 
Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 586

                                                                       
Query: 346 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 405
           |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||| |||
Sbjct: 587 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 646

                                                    
Query: 406 atgatgagtgccggagagctggagagtgggaacgctggaga 446
           ||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 647 atgatgagtgctggagagcttgagagtggaaacgcaggaga 687

---

>gb|BT000613.1| Arabidopsis thaliana Rubsico activase  (At2g39730/T5I7.3) mRNA,
           complete cds
          Length = 1425

 Score =  224 bits (113), Expect = 2e-55
 Identities = 239/281 (85%)
 Strand = Plus / Plus

                                                                       
Query: 166 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 225
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 322 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 381

                                                                       
Query: 226 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 285
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 382 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 441

                                                                       
Query: 286 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 345
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| 
Sbjct: 442 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 501

                                                                       
Query: 346 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 405
           |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||| |||
Sbjct: 502 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 561

                                                    
Query: 406 atgatgagtgccggagagctggagagtgggaacgctggaga 446
           ||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 562 atgatgagtgctggagagcttgagagtggaaacgcaggaga 602

---

>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds
          Length = 1674

 Score =  224 bits (113), Expect = 2e-55
 Identities = 239/281 (85%)
 Strand = Plus / Plus

                                                                       
Query: 166 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 225
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469

                                                                       
Query: 226 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 285
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529

                                                                       
Query: 286 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 345
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| 
Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 589

                                                                       
Query: 346 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 405
           |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||| |||
Sbjct: 590 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 649

                                                    
Query: 406 atgatgagtgccggagagctggagagtgggaacgctggaga 446
           ||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 650 atgatgagtgctggagagcttgagagtggaaacgcaggaga 690

---

>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds
          Length = 1693

 Score =  224 bits (113), Expect = 2e-55
 Identities = 239/281 (85%)
 Strand = Plus / Plus

                                                                       
Query: 166 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 225
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 399 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 458

                                                                       
Query: 226 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 285
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 459 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 518

                                                                       
Query: 286 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 345
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| 
Sbjct: 519 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 578

                                                                       
Query: 346 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 405
           |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||| |||
Sbjct: 579 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 638

                                                    
Query: 406 atgatgagtgccggagagctggagagtgggaacgctggaga 446
           ||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 639 atgatgagtgctggagagcttgagagtggaaacgcaggaga 679

---

>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds
          Length = 1655

 Score =  224 bits (113), Expect = 2e-55
 Identities = 239/281 (85%)
 Strand = Plus / Plus

                                                                       
Query: 166 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 225
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466

                                                                       
Query: 226 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 285
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526

                                                                       
Query: 286 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 345
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| 
Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 586

                                                                       
Query: 346 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 405
           |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||| |||
Sbjct: 587 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 646

                                                    
Query: 406 atgatgagtgccggagagctggagagtgggaacgctggaga 446
           ||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 647 atgatgagtgctggagagcttgagagtggaaacgcaggaga 687

---

>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete
           cds
          Length = 1674

 Score =  224 bits (113), Expect = 2e-55
 Identities = 239/281 (85%)
 Strand = Plus / Plus

                                                                       
Query: 166 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 225
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469

                                                                       
Query: 226 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 285
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529

                                                                       
Query: 286 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 345
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| 
Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 589

                                                                       
Query: 346 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 405
           |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||| |||
Sbjct: 590 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 649

                                                    
Query: 406 atgatgagtgccggagagctggagagtgggaacgctggaga 446
           ||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 650 atgatgagtgctggagagcttgagagtggaaacgcaggaga 690

---

>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence
          Length = 1787

 Score =  224 bits (113), Expect = 2e-55
 Identities = 239/281 (85%)
 Strand = Plus / Plus

                                                                       
Query: 166 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 225
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584

                                                                       
Query: 226 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 285
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644

                                                                       
Query: 286 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 345
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| 
Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 704

                                                                       
Query: 346 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 405
           |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||| |||
Sbjct: 705 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 764

                                                    
Query: 406 atgatgagtgccggagagctggagagtgggaacgctggaga 446
           ||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 765 atgatgagtgctggagagcttgagagtggaaacgcaggaga 805

---

>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
           complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score =  218 bits (110), Expect = 1e-53
 Identities = 224/262 (85%)
 Strand = Plus / Plus

                                                                       
Query: 206 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 265
           ||||| |||| ||||||| |||||  || |||||||| || || || |||||||||||||
Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490

                                                                       
Query: 266 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 325
           |||| |||||  || |||| |||||| |||  || || ||||||||||| || || ||||
Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550

                                                                       
Query: 326 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcca 385
           ||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| || ||||
Sbjct: 551 tgggtatctggggaggcaaaggtcaaggaaaatctttccaatgtgaacttgtttttgcca 610

                                                                       
Query: 386 agatgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgctggag 445
           ||||||| ||||||||||||||||||||||| ||||||||||| ||||| || || ||||
Sbjct: 611 agatgggaatcaaccccatcatgatgagtgctggagagctggaaagtggaaatgcaggag 670

                                 
Query: 446 agccagccaagctcatcaggca 467
           | || |||||||| ||||||||
Sbjct: 671 aacctgccaagctgatcaggca 692

---

>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1724

 Score =  218 bits (110), Expect = 1e-53
 Identities = 224/262 (85%)
 Strand = Plus / Plus

                                                                       
Query: 206 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 265
           ||||| |||| ||||||| |||||  || |||||||| || || || |||||||||||||
Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490

                                                                       
Query: 266 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 325
           |||| |||||  || |||| |||||| |||  || || ||||||||||| || || ||||
Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550

                                                                       
Query: 326 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcca 385
           ||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| || ||||
Sbjct: 551 tgggtatctggggaggcaaaggtcaaggaaaatctttccaatgtgaacttgtttttgcca 610

                                                                       
Query: 386 agatgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgctggag 445
           ||||||| ||||||||||||||||||||||| ||||||||||| ||||| || || ||||
Sbjct: 611 agatgggaatcaaccccatcatgatgagtgctggagagctggaaagtggaaatgcaggag 670

                                 
Query: 446 agccagccaagctcatcaggca 467
           |||| || ||||| ||||||||
Sbjct: 671 agcccgcaaagctgatcaggca 692

---

>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds
          Length = 1832

 Score =  214 bits (108), Expect = 2e-52
 Identities = 201/232 (86%)
 Strand = Plus / Plus

                                                                       
Query: 236 tctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatga 295
           ||||||| || ||||| || ||||||||||||||||| ||  || |||| |||||| |||
Sbjct: 630 tctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttcttga 689

                                                                       
Query: 296 ccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaa 355
            | |||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |
Sbjct: 690 acttgcccaacatcaagataccactcatcttgggtgtttggggaggcaagggtcaaggta 749

                                                                       
Query: 356 aatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtg 415
           |||| ||||| ||||||||||||||||||||| | || || |||||||||||||||||||
Sbjct: 750 aatccttccaatgtgagcttgtgttcgccaagttaggaataaaccccatcatgatgagtg 809

                                                               
Query: 416 ccggagagctggagagtgggaacgctggagagccagccaagctcatcaggca 467
           |||||||  |||| ||||| || || ||||||||||| ||| | ||||||||
Sbjct: 810 ccggagaattggaaagtggaaatgcaggagagccagctaagttgatcaggca 861

---

>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear
           gene for chloroplast product
          Length = 1671

 Score =  210 bits (106), Expect = 3e-51
 Identities = 190/218 (87%)
 Strand = Plus / Plus

                                                                       
Query: 235 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 294
           |||||||| |||||||||||  |||||||||||||||| ||  || |||| |||||||||
Sbjct: 469 ttctacattgctcctgcttttctggacaagcttgttgttcacatcaccaagaacttcatg 528

                                                                       
Query: 295 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 354
           ||| |||||||||||||| | || |||||  | |||||||||||||||||||| ||||||
Sbjct: 529 accttgcccaacatcaaggttcctctcattcttggtatctggggaggcaagggacaagga 588

                                                                       
Query: 355 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 414
           || || ||||| ||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct: 589 aagtctttccaatgtgagcttgtctttgccaagatgggaatcaaccccatcatgatgagt 648

                                                 
Query: 415 gccggagagctggagagtgggaacgctggagagccagc 452
           || |||||| |||| ||||| || || |||||||||||
Sbjct: 649 gctggagagttggaaagtggaaatgccggagagccagc 686



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 55  tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 113
           ||||||||||| || ||||||||||| || ||||| || |||||||| || ||||||||
Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353

---

>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds
          Length = 1627

 Score =  204 bits (103), Expect = 2e-49
 Identities = 211/247 (85%)
 Strand = Plus / Plus

                                                                       
Query: 206 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 265
           ||||| |||| ||||||| || ||  || |||||||| ||||| |||||  |||||||||
Sbjct: 436 agtacaactttgacaacatcaaggatggtttctacattgctccagcttttttggacaagc 495

                                                                       
Query: 266 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 325
           ||||||| ||  || |||| |||||||||||| |||||||||||||| | || |||||  
Sbjct: 496 ttgttgttcacatcgccaagaacttcatgaccttgcccaacatcaaggttcctctcattc 555

                                                                       
Query: 326 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcca 385
           | ||| |||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||
Sbjct: 556 ttggtgtctggggaggcaagggacaaggaaaatctttccaatgtgagcttgtctttgcca 615

                                                                       
Query: 386 agatgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgctggag 445
           ||||||| ||||||||||||||||||||||| |||||| |||| ||||| || || ||||
Sbjct: 616 agatgggaatcaaccccatcatgatgagtgctggagagttggaaagtggaaatgccggag 675

                  
Query: 446 agccagc 452
           |||||||
Sbjct: 676 agccagc 682

---

>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds
          Length = 1809

 Score =  202 bits (102), Expect = 7e-49
 Identities = 201/234 (85%)
 Strand = Plus / Plus

                                                                       
Query: 234 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 293
           ||||||||| || ||| |||||||||||||| ||||||| ||  || |||| |||| | |
Sbjct: 514 cttctacattgccccttctttcatggacaagattgttgttcacatcaccaagaactactt 573

                                                                       
Query: 294 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 353
           || | |||| ||||||||| | || || ||||||||||| ||||||||||| ||||||||
Sbjct: 574 gaacttgcctaacatcaaggttcccctgatcttgggtatttggggaggcaaaggtcaagg 633

                                                                       
Query: 354 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgag 413
            ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 634 taaatccttccaatgtgagcttgtgttcgccaagatgggaatcaaccccatcatgatgag 693

                                                                 
Query: 414 tgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggca 467
           ||| |||||  |||| ||||| ||||| ||||||||||| ||| | ||||||||
Sbjct: 694 tgcgggagaattggaaagtggaaacgcaggagagccagcaaagttgatcaggca 747

---

>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase
          Length = 1652

 Score =  194 bits (98), Expect = 2e-46
 Identities = 238/282 (84%), Gaps = 2/282 (0%)
 Strand = Plus / Plus

                                                                       
Query: 166 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 225
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 391 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 450

                                                                       
Query: 226 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 285
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 451 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 510

                                                                       
Query: 286 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatct-ggggaggcaa 344
           |||||| |||| ||||| ||||||||| | ||||| || |||||  ||| ||||||||||
Sbjct: 511 aacttcttgactctgcctaacatcaaggttccacttattttgggc-tctcggggaggcaa 569

                                                                       
Query: 345 gggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccat 404
            |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||| ||
Sbjct: 570 aggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaat 629

                                                     
Query: 405 catgatgagtgccggagagctggagagtgggaacgctggaga 446
           |||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 630 catgatgagtgctggagagcttgagagtggaaacgcaggaga 671

---

>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds
          Length = 1656

 Score =  192 bits (97), Expect = 7e-46
 Identities = 190/221 (85%)
 Strand = Plus / Plus

                                                                       
Query: 232 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 291
           ||||||||||| || ||||||||||||||||| |||||||| ||  || |||| ||||||
Sbjct: 434 ggcttctacattgcccctgctttcatggacaaacttgttgttcacatcaccaagaacttc 493

                                                                       
Query: 292 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 351
            ||||  |||||||||||||| | ||||||||||||||| | ||||||||||| ||||||
Sbjct: 494 ttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaa 553

                                                                       
Query: 352 ggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatg 411
           || ||||||||||| ||||||||||| |||   |||||||| ||||||||||| ||||||
Sbjct: 554 ggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatg 613

                                                    
Query: 412 agtgccggagagctggagagtgggaacgctggagagccagc 452
           ||||| |||||  |||| ||||| || || |||||||||||
Sbjct: 614 agtgctggagaattggaaagtggaaatgcaggagagccagc 654

---

>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase
           (pJQ4)
          Length = 1655

 Score =  188 bits (95), Expect = 1e-44
 Identities = 185/215 (86%)
 Strand = Plus / Plus

                                                                       
Query: 235 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 294
           ||||||||||||||| |||||||||||||||||||||| ||  || |||| |||||| ||
Sbjct: 426 ttctacatcgctccttctttcatggacaagcttgttgttcacatcaccaagaacttcttg 485

                                                                       
Query: 295 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 354
           |   |||||||||||||| | |||||||| |||||| ||||||||||||| |||||||| 
Sbjct: 486 aaattgcccaacatcaaggttccactcattttgggtgtctggggaggcaaaggtcaaggt 545

                                                                       
Query: 355 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 414
           ||||| ||||||||||||||||| |||   |||||||| |||||||| || |||||||||
Sbjct: 546 aaatctttccagtgtgagcttgtcttcagaaagatgggaatcaaccctattatgatgagt 605

                                              
Query: 415 gccggagagctggagagtgggaacgctggagagcc 449
           ||||||||  |||| ||||| || || ||||||||
Sbjct: 606 gccggagaattggaaagtggaaatgcaggagagcc 640

---

>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase mRNA
          Length = 1853

 Score =  167 bits (84), Expect = 4e-38
 Identities = 189/224 (84%)
 Strand = Plus / Plus

                                                                       
Query: 244 gctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgccc 303
           ||||| ||||| ||||||||||||||||| ||  || |||| |||||||||||||| || 
Sbjct: 485 gctcccgcttttatggacaagcttgttgttcacatcaccaagaacttcatgacccttcct 544

                                                                       
Query: 304 aacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattc 363
           ||||| ||| | || |||||||||||||| ||||||||||| ||||| || || || |||
Sbjct: 545 aacatgaaggttcctctcatcttgggtatttggggaggcaaaggtcagggcaagtctttc 604

                                                                       
Query: 364 cagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagag 423
           ||||| |||||||| || ||||||||| | |||| ||| |||||||||||||||||||| 
Sbjct: 605 cagtgcgagcttgtctttgccaagatgagaatcagccctatcatgatgagtgccggagaa 664

                                                       
Query: 424 ctggagagtgggaacgctggagagccagccaagctcatcaggca 467
            |||| ||||| ||||| ||||| || || ||||| ||||||||
Sbjct: 665 ttggaaagtggaaacgcaggagaacccgcgaagctgatcaggca 708



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                       
Query: 78  ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggc 137
           |||||||||||| || |||||||| ||||| ||||| |  |||||||| |||||||||||
Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378

---

>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence
          Length = 1519

 Score =  163 bits (82), Expect = 6e-37
 Identities = 184/218 (84%)
 Strand = Plus / Plus

                                                                       
Query: 235 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 294
           |||||||||||||||||||||||||||||||||||||| ||  || |||| |||||| | 
Sbjct: 473 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttctta 532

                                                                       
Query: 295 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 354
           ||  |||||||||||||| | ||||| || |||||| | |||||||| || |||||||| 
Sbjct: 533 acgttgcccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggt 592

                                                                       
Query: 355 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 414
           ||||||||||| ||||||||||| |||   |||||||| |||||||| || |||||||||
Sbjct: 593 aaatcattccaatgtgagcttgtcttcagaaagatgggaatcaacccaattatgatgagt 652

                                                 
Query: 415 gccggagagctggagagtgggaacgctggagagccagc 452
           || |||||  | || ||||| || || |||||||||||
Sbjct: 653 gctggagaattagaaagtggaaatgcaggagagccagc 690

---

>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene)
          Length = 678

 Score =  163 bits (82), Expect = 6e-37
 Identities = 169/198 (85%)
 Strand = Plus / Plus

                                                                       
Query: 237 ctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgac 296
           |||||| ||||||||||| ||||||||||||||||| ||  |||| ||||||||||||| 
Sbjct: 156 ctacattgctcctgcttttatggacaagcttgttgttcacatctcgaaaaacttcatgaa 215

                                                                       
Query: 297 cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaa 356
           | |||| ||||||||| | || |||||  | ||||| |||||||||||||||||||||||
Sbjct: 216 cttgcctaacatcaaggttcctctcattcttggtatttggggaggcaagggtcaaggaaa 275

                                                                       
Query: 357 atcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgc 416
            || ||||| ||||||||||| || || ||  |||| |||||||| || |||||||||||
Sbjct: 276 gtccttccaatgtgagcttgtatttgcaaaattgggaatcaacccaattatgatgagtgc 335

                             
Query: 417 cggagagctggagagtgg 434
           ||| || |||||||||||
Sbjct: 336 cggtgaactggagagtgg 353

---

>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds
          Length = 1063

 Score =  105 bits (53), Expect = 1e-19
 Identities = 95/109 (87%)
 Strand = Plus / Plus

                                                                       
Query: 344 agggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaacccca 403
           |||| ||||||||||| |||||   ||||||||| || ||||||||||| ||||||||||
Sbjct: 7   agggacaaggaaaatctttccaagctgagcttgtctttgccaagatgggaatcaacccca 66

                                                            
Query: 404 tcatgatgagtgccggagagctggagagtgggaacgctggagagccagc 452
           ||||||||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 67  tcatgatgagtgctggagagcttgaaagtggaaatgcaggagagccagc 115

---

>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase
            {alternatively spliced} [spinach, Genomic, 3691 nt]
          Length = 3691

 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Plus

                                                                        
Query: 311  agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 370
            |||| ||||||||||||||| | |||||||||||||||||||| ||||| ||||| ||||
Sbjct: 2238 agataccactcatcttgggtgtttggggaggcaagggtcaaggtaaatccttccaatgtg 2297

                             
Query: 371  agcttgtgttcgccaag 387
            |||||||||||||||||
Sbjct: 2298 agcttgtgttcgccaag 2314



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                        
Query: 399  ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 458
            ||||||||||||||||||||||||  |||| ||||| || || ||||||||||| ||| |
Sbjct: 2421 ccccatcatgatgagtgccggagaattggaaagtggaaatgcaggagagccagctaagtt 2480

                     
Query: 459  catcaggca 467
             ||||||||
Sbjct: 2481 gatcaggca 2489



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 67/79 (84%)
 Strand = Plus / Plus

                                                                        
Query: 234  cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 293
            ||||||||| || ||||| || ||||||||||||||||| ||  || |||| |||||| |
Sbjct: 2067 cttctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttctt 2126

                               
Query: 294  gaccctgcccaacatcaag 312
            || | ||||||||||||||
Sbjct: 2127 gaacttgcccaacatcaag 2145

---

>gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase pseudogene, partial sequence
          Length = 472

 Score =  103 bits (52), Expect = 5e-19
 Identities = 111/128 (86%), Gaps = 2/128 (1%)
 Strand = Plus / Plus

                                                                       
Query: 343 aagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaacccc 402
           ||||||||||||||||| ||||| ||||| ||||| || ||||||||||| ||||  || 
Sbjct: 1   aagggtcaaggaaaatctttccaatgtgaacttgtttttgccaagatgggaatcactcct 60

                                                                       
Query: 403 atcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatc 462
           ||||||||||||||||||||  | || ||| |||||||| |||||||||| |||||||||
Sbjct: 61  atcatgatgagtgccggagaattagaaagt-ggaacgct-gagagccagctaagctcatc 118

                   
Query: 463 aggcagcg 470
           || |||||
Sbjct: 119 agacagcg 126

---

>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds
          Length = 1216

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 72/80 (90%)
 Strand = Plus / Plus

                                                                       
Query: 319 ctcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtg 378
           ||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||||| 
Sbjct: 186 ctcattttgggtatctggggaggtaaaggtcaaggtaaatctttccagtgtgagcttgtc 245

                               
Query: 379 ttcgccaagatgggcatcaa 398
           || ||||||||||| |||||
Sbjct: 246 tttgccaagatgggaatcaa 265



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                       
Query: 399 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 458
           ||||||||||||||||||||||||  ||||||| || ||||| |||||||| || ||| |
Sbjct: 467 ccccatcatgatgagtgccggagaattggagagcggcaacgcaggagagcccgcgaagtt 526

                         
Query: 459 catcaggcagcggt 472
            |||||||| ||||
Sbjct: 527 gatcaggcaacggt 540



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                       
Query: 235 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 294
           |||||||| ||||| |||||||||||||||||||| || ||  || ||||||||||||||
Sbjct: 6   ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 65

             
Query: 295 ac 296
           ||
Sbjct: 66  ac 67

---

>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase
          Length = 2031

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 137/167 (82%)
 Strand = Plus / Plus

                                                                       
Query: 286 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 345
           |||||| ||||||| || ||||| ||| | || |||||  ||||| | |||||||| || 
Sbjct: 522 aacttcttgaccctcccgaacattaaggttcctctcattctgggtgtttggggaggtaaa 581

                                                                       
Query: 346 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 405
           ||||||||||| || ||||||||||| ||||| || || |||||||| |||||||| || 
Sbjct: 582 ggtcaaggaaagtctttccagtgtgaacttgtatttgctaagatgggaatcaaccctatt 641

                                                          
Query: 406 atgatgagtgccggagagctggagagtgggaacgctggagagccagc 452
           ||||||||||| || ||  | || |||||||| || |||||||||||
Sbjct: 642 atgatgagtgctggggaattagaaagtgggaatgcaggagagccagc 688

---

>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete
             sequence
          Length = 92624

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                         
Query: 316   ccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagctt 375
             ||||| || |||||||| ||||||||||| |||||||| ||||| |||||||||||||||
Sbjct: 14733 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagctt 14674

                                    
Query: 376   gtgttcgccaagatgggcatcaa 398
             ||  | ||||||||||| |||||
Sbjct: 14673 gtcatggccaagatgggtatcaa 14651



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                         
Query: 238   tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 297
             ||||| ||||||||||||||||||||||||||||| ||  || |||| |||||| |||| 
Sbjct: 14910 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 14851

                            
Query: 298   ctgcccaacatcaag 312
             ||||| |||||||||
Sbjct: 14850 ctgcctaacatcaag 14836



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                         
Query: 403   atcatgatgagtgccggagagctggagagtgggaacgctggaga 446
             |||||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 14555 atcatgatgagtgctggagagcttgagagtggaaacgcaggaga 14512

---

>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase
            activase (rca) gene, complete cds
          Length = 3974

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 73/83 (87%)
 Strand = Plus / Plus

                                                                        
Query: 316  ccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagctt 375
            ||||| || |||||||| ||||||||||| |||||||| ||||| |||||||||||||||
Sbjct: 2550 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagctt 2609

                                   
Query: 376  gtgttcgccaagatgggcatcaa 398
            ||  | ||||||||||| |||||
Sbjct: 2610 gtcatggccaagatgggtatcaa 2632



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                        
Query: 238  tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 297
            ||||| ||||||||||||||||||||||||||||| ||  || |||| |||||| |||| 
Sbjct: 2373 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 2432

                           
Query: 298  ctgcccaacatcaag 312
            ||||| |||||||||
Sbjct: 2433 ctgcctaacatcaag 2447



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                        
Query: 403  atcatgatgagtgccggagagctggagagtgggaacgctggaga 446
            |||||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 2728 atcatgatgagtgctggagagcttgagagtggaaacgcaggaga 2771

---

>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence
          Length = 108028

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 76/88 (86%)
 Strand = Plus / Minus

                                                                        
Query: 310  aagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgt 369
            ||||| || ||||| ||||| || ||||||||||| ||||||||||| ||||| || |||
Sbjct: 7541 aagattcctctcatattgggcatttggggaggcaaaggtcaaggaaagtcatttcaatgt 7482

                                        
Query: 370  gagcttgtgttcgccaagatgggcatca 397
            |||||||| || ||||||||||| ||||
Sbjct: 7481 gagcttgtatttgccaagatgggaatca 7454



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 406  atgatgagtgccggagagctggagagtgggaacgctggagagcc 449
            |||||||||||||||||  |||| ||||| || || ||||||||
Sbjct: 7262 atgatgagtgccggagaattggaaagtggaaatgcaggagagcc 7219

---

>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence
          Length = 105218

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                          
Query: 328    ggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaag 387
              |||||||||||||| || |||||||||||||| |||||   ||||||||| || ||||||
Sbjct: 104933 ggtatctggggaggtaaaggtcaaggaaaatctttccaagctgagcttgtctttgccaag 104874

                         
Query: 388    atgggcatcaa 398
              |||||||||||
Sbjct: 104873 atgggcatcaa 104863



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                                
Query: 403    atcatgatgagtgccggagagctggagagtgggaacgctggagagccagc 452
              |||||||||||||| |||||||| || ||||| || || ||||| |||||
Sbjct: 104183 atcatgatgagtgctggagagctagaaagtggaaatgcgggagaaccagc 104134

---

>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence
          Length = 163160

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                         
Query: 328   ggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaag 387
             |||||||||||||| || |||||||||||||| |||||   ||||||||| || ||||||
Sbjct: 83958 ggtatctggggaggtaaaggtcaaggaaaatctttccaagctgagcttgtctttgccaag 83899

                        
Query: 388   atgggcatcaa 398
             |||||||||||
Sbjct: 83898 atgggcatcaa 83888



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                     
Query: 217   gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgt 272
             |||||||||||||  || || ||||| || |||||||| |||||||||||||||||
Sbjct: 84295 gacaacaccatggatggtttttacattgcacctgcttttatggacaagcttgttgt 84240



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                               
Query: 403   atcatgatgagtgccggagagctggagagtgggaacgctggagagccagc 452
             |||||||||||||| |||||||| || ||||| || || ||||| |||||
Sbjct: 83208 atcatgatgagtgctggagagctagaaagtggaaatgcgggagaaccagc 83159

---

>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 102/125 (81%)
 Strand = Plus / Plus

                                                                        
Query: 232  ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 291
            |||||||||||| ||||||||||| |||| ||| |     ||||| |  |||| ||||||
Sbjct: 1128 ggcttctacatctctcctgctttcctggataagatgaccatccatgttgccaagaacttc 1187

                                                                        
Query: 292  atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 351
            |||  ||||||||| |||||| | || |||||| ||||||||||||| |||||||| || 
Sbjct: 1188 atggacctgcccaagatcaaggttcccctcatcctgggtatctggggtggcaagggccag 1247

                 
Query: 352  ggaaa 356
            |||||
Sbjct: 1248 ggaaa 1252



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                        
Query: 389  tgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgctggagagc 448
            ||||||||| ||||||| | |||  |||||| |||||||||  ||| ||||| || ||||
Sbjct: 1443 tgggcatcagccccatcgtcatgtctgccggtgagctggagtctggtaacgccggtgagc 1502

                          
Query: 449  cagccaagctcatc 462
            | ||||||||||||
Sbjct: 1503 ccgccaagctcatc 1516

---

>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase
           activase mRNA, complete cds
          Length = 1693

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                       
Query: 281 ccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggag 340
           |||| |||||||||  ||||||||| |||||| | || |||||  ||||||||||||| |
Sbjct: 406 ccaagaacttcatggacctgcccaagatcaaggtgcccctcattctgggtatctggggtg 465

                  
Query: 341 gcaaggg 347
           |||||||
Sbjct: 466 gcaaggg 472

---

>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds
          Length = 4500

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                               
Query: 297  cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 347
            ||||||||| |||||| | || |||||  ||||||||||||| ||||||||
Sbjct: 1634 cctgcccaagatcaaggtgcccctcattctgggtatctggggtggcaaggg 1684

---

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 80      ccgacgaccagcaggacatcacc 102
               |||||||||||||||||||||||
Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066

---

>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 122     actcgctcttccaggcgcccac 143
               ||||||||||||||||||||||
Sbjct: 2553524 actcgctcttccaggcgcccac 2553503

---

>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 12      catggcagcggagaacatcg 31
               ||||||||||||||||||||
Sbjct: 1379894 catggcagcggagaacatcg 1379875

---

>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome
          Length = 10732

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 76   atctccgacgaccagcaggacatc 99
            |||||| |||||||||||||||||
Sbjct: 8676 atctcccacgaccagcaggacatc 8653

---

>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     gcagcggagaacatcgacga 35
              ||||||||||||||||||||
Sbjct: 173412 gcagcggagaacatcgacga 173393

---

>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA
          Length = 1685

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 139  cccacgggcgacggcacccacgag 162
            ||||||||||||| ||||||||||
Sbjct: 1369 cccacgggcgacgtcacccacgag 1392

---

>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 296     ccctgcccaacatcaagatc 315
               ||||||||||||||||||||
Sbjct: 1130357 ccctgcccaacatcaagatc 1130376

---

>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 12      catggcagcggagaacatcg 31
               ||||||||||||||||||||
Sbjct: 1380755 catggcagcggagaacatcg 1380736

---

>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila)
           (NOTCH1), mRNA
          Length = 9312

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 139 cccacgggcgacggcacccacgag 162
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>gb|AC009991.5|ATAC009991 Arabidopsis thaliana chromosome III BAC F9F8 genomic sequence, complete
             sequence
          Length = 101284

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 361   ttccagtgtgagcttgtgtt 380
             ||||||||||||||||||||
Sbjct: 97287 ttccagtgtgagcttgtgtt 97268

---

>gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, complete sequence
          Length = 193170

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 232    ggcttctacatcgctcctgctttc 255
              ||||||| ||||||||||||||||
Sbjct: 147044 ggcttctgcatcgctcctgctttc 147067

---

>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3'
              end of the gene for activator of G-protein signalling 3
              (AGS3), two novel genes, the CARD9 gene for caspase
              recruitment domain family member 9, the SNAPC4 gene for a
              190kDa small nuclear RNA activating complex polypeptide 4, 
              the SDCCAG3 gene for serologically defined colon cancer
              antigen 3, the INPP5E gene for a 72kDa inositol
              polyphosphate-5-phosphatase, the gene for
              phosphatidylinositol polyphosphate 5-phosphatase type IV
              (PPI5PIV), a novel gene (KIAA0310), the 3' end of the
              NOTCH1 gene for Notch homolog 1 translocation-associated
              (Drosophila) and twenty CpG islands, complete sequence
          Length = 188462

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 139    cccacgggcgacggcacccacgag 162
              ||||||||||||| ||||||||||
Sbjct: 166513 cccacgggcgacgtcacccacgag 166490

---

>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence
          Length = 147210

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   ccagagggaagggcatcgtg 120
             ||||||||||||||||||||
Sbjct: 35948 ccagagggaagggcatcgtg 35967

---

>gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, complete sequence
          Length = 141442

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 271   gtccatctctccaaaaactt 290
             ||||||||||||||||||||
Sbjct: 63248 gtccatctctccaaaaactt 63229

---

>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence
          Length = 81641

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   ccagagggaagggcatcgtg 120
             ||||||||||||||||||||
Sbjct: 47211 ccagagggaagggcatcgtg 47230

---

>gb|AE009524.1| Brucella melitensis 16M chromosome I, section 81 of 195 of the
            complete sequence
          Length = 10900

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 296  ccctgcccaacatcaagatc 315
            ||||||||||||||||||||
Sbjct: 7760 ccctgcccaacatcaagatc 7741

---

>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds
          Length = 7693

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 139 cccacgggcgacggcacccacgag 162
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 72      cgatatctccgacgaccagc 91
               ||||||||||||||||||||
Sbjct: 4182002 cgatatctccgacgaccagc 4181983

---

>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 296     ccctgcccaacatcaagatc 315
               ||||||||||||||||||||
Sbjct: 1147720 ccctgcccaacatcaagatc 1147739

---

>ref|XM_312558.2| Anopheles gambiae str. PEST ENSANGP00000014302
           (ENSANGG00000011813), partial mRNA
          Length = 1773

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 380 tcgccaagatgggcatcaac 399
           ||||||||||||||||||||
Sbjct: 641 tcgccaagatgggcatcaac 660

---

>emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chromosome 12, complete
              sequence
          Length = 219072

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 232    ggcttctacatcgctcctgctttc 255
              ||||||| ||||||||||||||||
Sbjct: 141825 ggcttctgcatcgctcctgctttc 141848

---

>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain
               2308
          Length = 2121359

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 296     ccctgcccaacatcaagatc 315
               ||||||||||||||||||||
Sbjct: 1144872 ccctgcccaacatcaagatc 1144891

---

>gb|U51683.1|BAU51683 Brucella abortus phosphatidate cytidyltransferase (cdsA), group 1
            outer membrane protein (omp1), LpxD (lpxD), FabZ (fabZ),
            and LpxA (lpxA) genes, complete cds
          Length = 8895

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 296  ccctgcccaacatcaagatc 315
            ||||||||||||||||||||
Sbjct: 8238 ccctgcccaacatcaagatc 8219

---

>emb|AL627188.18| Mouse DNA sequence from clone RP23-113G7 on chromosome 4, complete
             sequence
          Length = 208153

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 425   tggagagtgggaacgctgga 444
             ||||||||||||||||||||
Sbjct: 90247 tggagagtgggaacgctgga 90228

---

>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end
          Length = 7332

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 139 cccacgggcgacggcacccacgag 162
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,853,568
Number of Sequences: 3902068
Number of extensions: 3853568
Number of successful extensions: 67101
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66681
Number of HSP's gapped (non-prelim): 411
length of query: 473
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 451
effective length of database: 17,147,199,772
effective search space: 7733387097172
effective search space used: 7733387097172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---