Clone Name | basd2g08 |
---|---|
Clone Library Name | barley_pub |
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 440 cacttcatccacggttttttg 460 ||||||||||||||||||||| Sbjct: 2008965 cacttcatccacggttttttg 2008945
>gb|AC024828.1| Caenorhabditis elegans cosmid Y55F3BL, complete sequence Length = 25777 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 343 aagttttttgttttcttacat 363 ||||||||||||||||||||| Sbjct: 17454 aagttttttgttttcttacat 17474
>gb|AC121899.3| Mus musculus BAC clone RP24-166J12 from chromosome 6, complete sequence Length = 129975 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 339 tattaagttttttgttttctt 359 ||||||||||||||||||||| Sbjct: 116519 tattaagttttttgttttctt 116539
>gb|AC012083.6| Homo sapiens 12 BAC RP11-864A19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166257 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 375 ctatgaaaagacaaaactgtg 395 ||||||||||||||||||||| Sbjct: 63554 ctatgaaaagacaaaactgtg 63534
>gb|AC069160.7|AC069160 Arabidopsis thaliana chromosome 1 BAC T9I1 genomic sequence, complete sequence Length = 99241 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 347 tttttgttttcttacatgtggattc 371 ||||||||||||||||||| ||||| Sbjct: 83062 tttttgttttcttacatgttgattc 83086
>gb|AC155922.1| Mus musculus BAC clone RP24-501E5 from 12, complete sequence Length = 169610 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 339 tattaagttttttgttttctt 359 ||||||||||||||||||||| Sbjct: 62534 tattaagttttttgttttctt 62554
>dbj|D21071.2| Rana catesbeiana mRNA for bullfrog skeletal muscle calcium release channel (ryanodine receptor) beta isoform(RyR3), complete cds Length = 16010 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 acagatagttggccaaattgt 181 ||||||||||||||||||||| Sbjct: 14494 acagatagttggccaaattgt 14474
>gb|AC152822.2| Mus musculus BAC clone RP24-319O19 from 6, complete sequence Length = 184667 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 339 tattaagttttttgttttctt 359 ||||||||||||||||||||| Sbjct: 57442 tattaagttttttgttttctt 57462
>emb|AJ236313.1|SMA236313 Strumpfia maritima chloroplast ndhF gene Length = 2198 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 213 ggggttggtgttcttagtttt 233 ||||||||||||||||||||| Sbjct: 2092 ggggttggtgttcttagtttt 2112
>gb|AC144926.6| Mus musculus chromosome 8, clone RP23-8E24, complete sequence Length = 214694 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 catactgtgttttggacaga 165 |||||||||||||||||||| Sbjct: 203018 catactgtgttttggacaga 202999
>gb|AC156802.7| Mus musculus BAC clone RP23-119P9 from chromosome 13, complete sequence Length = 209975 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 ttaagttttttgttttctta 360 |||||||||||||||||||| Sbjct: 151112 ttaagttttttgttttctta 151093
>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome Length = 2572079 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 550 agtaatttggagcctctttg 569 |||||||||||||||||||| Sbjct: 572348 agtaatttggagcctctttg 572329
>gb|AC163449.2| Mus musculus chromosome 3, clone RP23-193H21, complete sequence Length = 199224 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 gtactatgaaaagacaaaac 391 |||||||||||||||||||| Sbjct: 21396 gtactatgaaaagacaaaac 21415
>gb|AC156554.13| Mus musculus chromosome 8, clone RP23-15O21, complete sequence Length = 221400 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 catactgtgttttggacaga 165 |||||||||||||||||||| Sbjct: 67435 catactgtgttttggacaga 67416
>gb|AC166104.4| Mus musculus BAC clone RP23-320G7 from chromosome 15, complete sequence Length = 209081 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ttggggttcctgtgacacat 148 |||||||||||||||||||| Sbjct: 194715 ttggggttcctgtgacacat 194696
>gb|AC159963.7| Mus musculus chromosome 15, clone RP23-338F23, complete sequence Length = 228337 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 attaagttttttgttttctt 359 |||||||||||||||||||| Sbjct: 83483 attaagttttttgttttctt 83464
>gb|AC165238.5| Mus musculus chromosome 3, clone RP23-466A3, complete sequence Length = 180939 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 gtactatgaaaagacaaaac 391 |||||||||||||||||||| Sbjct: 36606 gtactatgaaaagacaaaac 36587
>gb|AC147353.2| Xenopus tropicalis clone CH216-23O22, complete sequence Length = 154980 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 ttttttgtttgcatgacttg 473 |||||||||||||||||||| Sbjct: 15201 ttttttgtttgcatgacttg 15182
>gb|AC146606.2| Mus musculus BAC clone RP23-277P7 from chromosome 15, complete sequence Length = 171208 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ttggggttcctgtgacacat 148 |||||||||||||||||||| Sbjct: 154043 ttggggttcctgtgacacat 154062
>gb|AC127694.3| Mus musculus BAC clone RP23-235J3 from chromosome 7, complete sequence Length = 225732 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 caaattgtagcatgttcatg 193 |||||||||||||||||||| Sbjct: 555 caaattgtagcatgttcatg 536
>gb|AC122041.4| Mus musculus BAC clone RP24-443H19 from chromosome 16, complete sequence Length = 183268 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 tactatgaaaagacaaaact 392 |||||||||||||||||||| Sbjct: 120267 tactatgaaaagacaaaact 120248
>emb|AL157407.11| Human DNA sequence from clone RP4-609E1 on chromosome 1p31.2-32.1 Contains the ARHI gene for ras homolog gene family member I, part of a novel gene (FLJ38762), ADP-ribosylation factor-like 5 (ARL5) pseudogene and the 3' end of a putative NFkB activating protein 373, complete sequence Length = 142396 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 caattaattgtcttggggtt 136 |||||||||||||||||||| Sbjct: 36085 caattaattgtcttggggtt 36104
>emb|AL669853.5| Mouse DNA sequence from clone RP23-204F22 on chromosome 11 Contains part of the Abca13 gene for ATP-binding cassette sub-family A (ABC1) member 13, complete sequence Length = 205759 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 actatgaaaagacaaaactg 393 |||||||||||||||||||| Sbjct: 102001 actatgaaaagacaaaactg 101982
>emb|CR925929.1| Pongo pygmaeus mRNA; cDNA DKFZp470B2311 (from clone DKFZp470B2311) Length = 4710 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ctatgaaaagacaaaactgt 394 |||||||||||||||||||| Sbjct: 1355 ctatgaaaagacaaaactgt 1374
>gb|AC078788.8| Homo sapiens 3 BAC RP11-292E2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166538 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 542 caagtagtagtaatttggag 561 |||||||||||||||||||| Sbjct: 17057 caagtagtagtaatttggag 17038
>gb|AC111194.4| Homo sapiens BAC clone RP11-463H12 from 4, complete sequence Length = 136450 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 421 tgttttcattgtttcctgtcactt 444 |||||||| ||||||||||||||| Sbjct: 38883 tgttttcagtgtttcctgtcactt 38860
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 534 acttcaaccaagtagtagta 553 |||||||||||||||||||| Sbjct: 39319 acttcaaccaagtagtagta 39338
>gb|AF307954.1|AF307954 Saccharomyces servazzii 46.1 kDa protein, KAR4-like protein, and SPB1-like protein genes, complete cds Length = 8341 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 gaacattataccctatgttt 425 |||||||||||||||||||| Sbjct: 3312 gaacattataccctatgttt 3293
>gb|AF146523.1|AF146523 Mus musculus receptor activity modifying protein 2 (Ramp2) mRNA, complete cds Length = 816 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ttcggcacgaggctcgccat 20 |||||||||||||||||||| Sbjct: 1 ttcggcacgaggctcgccat 20
>gb|AC011808.4|AC011808 Arabidopsis thaliana chromosome I BAC F19K19 genomic sequence, complete sequence Length = 93485 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 516 catattggttcagctttcac 535 |||||||||||||||||||| Sbjct: 48704 catattggttcagctttcac 48723
>gb|AC126052.4| Mus musculus BAC clone RP23-277H6 from 7, complete sequence Length = 202833 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 caaattgtagcatgttcatg 193 |||||||||||||||||||| Sbjct: 162073 caaattgtagcatgttcatg 162054 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,628,946 Number of Sequences: 3902068 Number of extensions: 6628946 Number of successful extensions: 120362 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 120260 Number of HSP's gapped (non-prelim): 102 length of query: 573 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 550 effective length of database: 17,143,297,704 effective search space: 9428813737200 effective search space used: 9428813737200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)