>gb|CP000097.1| Synechococcus sp. CC9902, complete genome
          Length = 2234828

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 440     cacttcatccacggttttttg 460
               |||||||||||||||||||||
Sbjct: 2008965 cacttcatccacggttttttg 2008945

>gb|AC024828.1| Caenorhabditis elegans cosmid Y55F3BL, complete sequence
          Length = 25777

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 343   aagttttttgttttcttacat 363
             |||||||||||||||||||||
Sbjct: 17454 aagttttttgttttcttacat 17474

>gb|AC121899.3| Mus musculus BAC clone RP24-166J12 from chromosome 6, complete sequence
          Length = 129975

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 339    tattaagttttttgttttctt 359
              |||||||||||||||||||||
Sbjct: 116519 tattaagttttttgttttctt 116539

>gb|AC012083.6| Homo sapiens 12 BAC RP11-864A19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 166257

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 375   ctatgaaaagacaaaactgtg 395
             |||||||||||||||||||||
Sbjct: 63554 ctatgaaaagacaaaactgtg 63534

>gb|AC069160.7|AC069160 Arabidopsis thaliana chromosome 1 BAC T9I1 genomic sequence, complete
             sequence
          Length = 99241

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 347   tttttgttttcttacatgtggattc 371
             ||||||||||||||||||| |||||
Sbjct: 83062 tttttgttttcttacatgttgattc 83086

>gb|AC155922.1| Mus musculus BAC clone RP24-501E5 from 12, complete sequence
          Length = 169610

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 339   tattaagttttttgttttctt 359
             |||||||||||||||||||||
Sbjct: 62534 tattaagttttttgttttctt 62554

>dbj|D21071.2| Rana catesbeiana mRNA for bullfrog skeletal muscle calcium release
             channel (ryanodine receptor) beta isoform(RyR3), complete
             cds
          Length = 16010

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 161   acagatagttggccaaattgt 181
             |||||||||||||||||||||
Sbjct: 14494 acagatagttggccaaattgt 14474

>gb|AC152822.2| Mus musculus BAC clone RP24-319O19 from 6, complete sequence
          Length = 184667

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 339   tattaagttttttgttttctt 359
             |||||||||||||||||||||
Sbjct: 57442 tattaagttttttgttttctt 57462

>emb|AJ236313.1|SMA236313 Strumpfia maritima chloroplast ndhF gene
          Length = 2198

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 213  ggggttggtgttcttagtttt 233
            |||||||||||||||||||||
Sbjct: 2092 ggggttggtgttcttagtttt 2112

>gb|AC144926.6| Mus musculus chromosome 8, clone RP23-8E24, complete sequence
          Length = 214694

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 146    catactgtgttttggacaga 165
              ||||||||||||||||||||
Sbjct: 203018 catactgtgttttggacaga 202999

>gb|AC156802.7| Mus musculus BAC clone RP23-119P9 from chromosome 13, complete sequence
          Length = 209975

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 341    ttaagttttttgttttctta 360
              ||||||||||||||||||||
Sbjct: 151112 ttaagttttttgttttctta 151093

>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 550    agtaatttggagcctctttg 569
              ||||||||||||||||||||
Sbjct: 572348 agtaatttggagcctctttg 572329

>gb|AC163449.2| Mus musculus chromosome 3, clone RP23-193H21, complete sequence
          Length = 199224

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 372   gtactatgaaaagacaaaac 391
             ||||||||||||||||||||
Sbjct: 21396 gtactatgaaaagacaaaac 21415

>gb|AC156554.13| Mus musculus chromosome 8, clone RP23-15O21, complete sequence
          Length = 221400

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   catactgtgttttggacaga 165
             ||||||||||||||||||||
Sbjct: 67435 catactgtgttttggacaga 67416

>gb|AC166104.4| Mus musculus BAC clone RP23-320G7 from chromosome 15, complete sequence
          Length = 209081

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    ttggggttcctgtgacacat 148
              ||||||||||||||||||||
Sbjct: 194715 ttggggttcctgtgacacat 194696

>gb|AC159963.7| Mus musculus chromosome 15, clone RP23-338F23, complete sequence
          Length = 228337

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   attaagttttttgttttctt 359
             ||||||||||||||||||||
Sbjct: 83483 attaagttttttgttttctt 83464

>gb|AC165238.5| Mus musculus chromosome 3, clone RP23-466A3, complete sequence
          Length = 180939

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 372   gtactatgaaaagacaaaac 391
             ||||||||||||||||||||
Sbjct: 36606 gtactatgaaaagacaaaac 36587

>gb|AC147353.2| Xenopus tropicalis clone CH216-23O22, complete sequence
          Length = 154980

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 454   ttttttgtttgcatgacttg 473
             ||||||||||||||||||||
Sbjct: 15201 ttttttgtttgcatgacttg 15182

>gb|AC146606.2| Mus musculus BAC clone RP23-277P7 from chromosome 15, complete sequence
          Length = 171208

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 129    ttggggttcctgtgacacat 148
              ||||||||||||||||||||
Sbjct: 154043 ttggggttcctgtgacacat 154062

>gb|AC127694.3| Mus musculus BAC clone RP23-235J3 from chromosome 7, complete
           sequence
          Length = 225732

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 174 caaattgtagcatgttcatg 193
           ||||||||||||||||||||
Sbjct: 555 caaattgtagcatgttcatg 536

>gb|AC122041.4| Mus musculus BAC clone RP24-443H19 from chromosome 16, complete sequence
          Length = 183268

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 373    tactatgaaaagacaaaact 392
              ||||||||||||||||||||
Sbjct: 120267 tactatgaaaagacaaaact 120248

>emb|AL157407.11| Human DNA sequence from clone RP4-609E1 on chromosome 1p31.2-32.1
             Contains the ARHI gene for ras homolog gene family member
             I, part of a novel gene (FLJ38762),  ADP-ribosylation
             factor-like 5 (ARL5) pseudogene and the 3' end of a
             putative NFkB activating protein 373, complete sequence
          Length = 142396

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   caattaattgtcttggggtt 136
             ||||||||||||||||||||
Sbjct: 36085 caattaattgtcttggggtt 36104

>emb|AL669853.5| Mouse DNA sequence from clone RP23-204F22 on chromosome 11 Contains part
              of the Abca13 gene for ATP-binding cassette sub-family A
              (ABC1) member 13, complete sequence
          Length = 205759

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 374    actatgaaaagacaaaactg 393
              ||||||||||||||||||||
Sbjct: 102001 actatgaaaagacaaaactg 101982

>emb|CR925929.1| Pongo pygmaeus mRNA; cDNA DKFZp470B2311 (from clone DKFZp470B2311)
          Length = 4710

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 375  ctatgaaaagacaaaactgt 394
            ||||||||||||||||||||
Sbjct: 1355 ctatgaaaagacaaaactgt 1374

>gb|AC078788.8| Homo sapiens 3 BAC RP11-292E2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166538

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 542   caagtagtagtaatttggag 561
             ||||||||||||||||||||
Sbjct: 17057 caagtagtagtaatttggag 17038

>gb|AC111194.4| Homo sapiens BAC clone RP11-463H12 from 4, complete sequence
          Length = 136450

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 421   tgttttcattgtttcctgtcactt 444
             |||||||| |||||||||||||||
Sbjct: 38883 tgttttcagtgtttcctgtcactt 38860

>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 534   acttcaaccaagtagtagta 553
             ||||||||||||||||||||
Sbjct: 39319 acttcaaccaagtagtagta 39338

>gb|AF307954.1|AF307954 Saccharomyces servazzii 46.1 kDa protein, KAR4-like protein, and
            SPB1-like protein genes, complete cds
          Length = 8341

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 406  gaacattataccctatgttt 425
            ||||||||||||||||||||
Sbjct: 3312 gaacattataccctatgttt 3293

>gb|AF146523.1|AF146523 Mus musculus receptor activity modifying protein 2 (Ramp2) mRNA,
          complete cds
          Length = 816

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttcggcacgaggctcgccat 20
          ||||||||||||||||||||
Sbjct: 1  ttcggcacgaggctcgccat 20

>gb|AC011808.4|AC011808 Arabidopsis thaliana chromosome I BAC F19K19 genomic sequence, complete
             sequence
          Length = 93485

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 516   catattggttcagctttcac 535
             ||||||||||||||||||||
Sbjct: 48704 catattggttcagctttcac 48723

>gb|AC126052.4| Mus musculus BAC clone RP23-277H6 from 7, complete sequence
          Length = 202833

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    caaattgtagcatgttcatg 193
              ||||||||||||||||||||
Sbjct: 162073 caaattgtagcatgttcatg 162054


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,628,946
Number of Sequences: 3902068
Number of extensions: 6628946
Number of successful extensions: 120362
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120260
Number of HSP's gapped (non-prelim): 102
length of query: 573
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 550
effective length of database: 17,143,297,704
effective search space: 9428813737200
effective search space used: 9428813737200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)