ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2g07 |
|---|---|
| Clone Library Name | barley_pub |
>SUI1_ORYSA (P33278) Protein translation factor SUI1 homolog (GOS2 protein)| Length = 115 Score = 105 bits (262), Expect = 3e-23 Identities = 49/57 (85%), Positives = 55/57 (96%) Frame = +2 Query: 140 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDYS 310 MSDLD+Q+PTAFDPFAEANA DSGA AGSK+YVHVR+QQRNGRKSLTTVQGLKK++S Sbjct: 1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFS 57
>SUI1_MAIZE (P56330) Protein translation factor SUI1 homolog (GOS2 protein)| Length = 115 Score = 105 bits (262), Expect = 3e-23 Identities = 49/57 (85%), Positives = 55/57 (96%) Frame = +2 Query: 140 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDYS 310 MSDLD+Q+PTAFDPFAEANA DSGA AGSK+YVHVR+QQRNGRKSLTTVQGLKK++S Sbjct: 1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFS 57
>SUI1_SPOST (Q9SM41) Protein translation factor SUI1 homolog| Length = 115 Score = 104 bits (259), Expect = 6e-23 Identities = 48/57 (84%), Positives = 55/57 (96%) Frame = +2 Query: 140 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDYS 310 MSDLD+Q+PTAFDPF+EANA DSGA AGSK+YVHVR+QQRNGRKSLTTVQGLKK++S Sbjct: 1 MSDLDIQIPTAFDPFSEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFS 57
>SUI12_ARATH (Q94JV4) Protein translation factor SUI1 homolog 2| Length = 113 Score = 99.8 bits (247), Expect = 2e-21 Identities = 49/57 (85%), Positives = 54/57 (94%) Frame = +2 Query: 140 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDYS 310 MSDL+VQVPTAFDPFA+ANAEDSGAG +K YVH+RVQQRNGRKSLTTVQGLKK+YS Sbjct: 1 MSDLEVQVPTAFDPFADANAEDSGAG--TKEYVHIRVQQRNGRKSLTTVQGLKKEYS 55
>SUI1_BRAOL (Q9SQF4) Protein translation factor SUI1 homolog (Translation| initiation factor nps45) Length = 113 Score = 97.4 bits (241), Expect = 8e-21 Identities = 48/57 (84%), Positives = 53/57 (92%) Frame = +2 Query: 140 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDYS 310 MS+LD QVPTAFDPFA+ANAEDSGAG +K YVH+RVQQRNGRKSLTTVQGLKK+YS Sbjct: 1 MSELDSQVPTAFDPFADANAEDSGAG--TKEYVHIRVQQRNGRKSLTTVQGLKKEYS 55
>SUI11_ARATH (P41568) Protein translation factor SUI1 homolog 1| Length = 113 Score = 97.4 bits (241), Expect = 8e-21 Identities = 48/57 (84%), Positives = 53/57 (92%) Frame = +2 Query: 140 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDYS 310 MS+LD QVPTAFDPFA+ANAEDSGAG +K YVH+RVQQRNGRKSLTTVQGLKK+YS Sbjct: 1 MSELDSQVPTAFDPFADANAEDSGAG--TKEYVHIRVQQRNGRKSLTTVQGLKKEYS 55
>SUI1_SALBA (O48650) Protein translation factor SUI1 homolog| Length = 113 Score = 96.3 bits (238), Expect = 2e-20 Identities = 48/57 (84%), Positives = 52/57 (91%) Frame = +2 Query: 140 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDYS 310 MS+ D +PTAFDPFAEANAEDSGAG +K+YVHVRVQQRNGRKSLTTVQGLKKDYS Sbjct: 1 MSEFDNAIPTAFDPFAEANAEDSGAG--TKDYVHVRVQQRNGRKSLTTVQGLKKDYS 55
>SUI1_PIMBR (O82569) Protein translation factor SUI1 homolog| Length = 113 Score = 79.0 bits (193), Expect = 3e-15 Identities = 38/57 (66%), Positives = 45/57 (78%) Frame = +2 Query: 140 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDYS 310 M D D+Q+PT+FDPFAEA D A +K YVH+R+QQRNGRKSLTTVQGLKK+ S Sbjct: 1 MVDSDIQIPTSFDPFAEAEITD--ATGSTKEYVHIRIQQRNGRKSLTTVQGLKKELS 55
>EIF1_PONPY (Q5RFF4) Eukaryotic translation initiation factor 1 (eIF1) (Protein| translation factor SUI1 homolog) Length = 113 Score = 64.3 bits (155), Expect = 7e-11 Identities = 27/46 (58%), Positives = 38/46 (82%) Frame = +2 Query: 170 AFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307 +FDPFA+A+ D AG+++Y+H+R+QQRNGRK+LTTVQG+ DY Sbjct: 9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDY 54
>EIF1_MOUSE (P48024) Eukaryotic translation initiation factor 1 (eIF1) (Protein| translation factor SUI1 homolog) Length = 113 Score = 64.3 bits (155), Expect = 7e-11 Identities = 27/46 (58%), Positives = 38/46 (82%) Frame = +2 Query: 170 AFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307 +FDPFA+A+ D AG+++Y+H+R+QQRNGRK+LTTVQG+ DY Sbjct: 9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDY 54
>EIF1_HUMAN (P41567) Eukaryotic translation initiation factor 1 (eIF1) (Protein| translation factor SUI1 homolog) (Sui1iso1) (A121) Length = 113 Score = 64.3 bits (155), Expect = 7e-11 Identities = 27/46 (58%), Positives = 38/46 (82%) Frame = +2 Query: 170 AFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307 +FDPFA+A+ D AG+++Y+H+R+QQRNGRK+LTTVQG+ DY Sbjct: 9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDY 54
>EIF1_BOVIN (Q5E938) Eukaryotic translation initiation factor 1 (eIF1) (Protein| translation factor SUI1 homolog) Length = 113 Score = 64.3 bits (155), Expect = 7e-11 Identities = 27/46 (58%), Positives = 38/46 (82%) Frame = +2 Query: 170 AFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307 +FDPFA+A+ D AG+++Y+H+R+QQRNGRK+LTTVQG+ DY Sbjct: 9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDY 54
>EIF1B_PIG (P61220) Eukaryotic translation initiation factor 1b (eIF1b)| (Protein translation factor SUI1 homolog GC20) Length = 113 Score = 64.3 bits (155), Expect = 7e-11 Identities = 28/51 (54%), Positives = 39/51 (76%) Frame = +2 Query: 155 VQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307 +Q +FDPFA+A D AG+++Y+H+R+QQRNGRK+LTTVQG+ DY Sbjct: 4 IQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDY 54
>EIF1B_MOUSE (Q9CXU9) Eukaryotic translation initiation factor 1b (eIF1b)| Length = 113 Score = 64.3 bits (155), Expect = 7e-11 Identities = 28/51 (54%), Positives = 39/51 (76%) Frame = +2 Query: 155 VQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307 +Q +FDPFA+A D AG+++Y+H+R+QQRNGRK+LTTVQG+ DY Sbjct: 4 IQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDY 54
>EIF1B_MACFA (Q4R4X9) Eukaryotic translation initiation factor 1b (eIF1b)| Length = 113 Score = 64.3 bits (155), Expect = 7e-11 Identities = 28/51 (54%), Positives = 39/51 (76%) Frame = +2 Query: 155 VQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307 +Q +FDPFA+A D AG+++Y+H+R+QQRNGRK+LTTVQG+ DY Sbjct: 4 IQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDY 54
>EIF1B_HUMAN (O60739) Eukaryotic translation initiation factor 1b (eIF1b)| (Protein translation factor SUI1 homolog GC20) Length = 113 Score = 64.3 bits (155), Expect = 7e-11 Identities = 28/51 (54%), Positives = 39/51 (76%) Frame = +2 Query: 155 VQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307 +Q +FDPFA+A D AG+++Y+H+R+QQRNGRK+LTTVQG+ DY Sbjct: 4 IQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDY 54
>SUI1_ASHGO (Q755R1) Protein translation factor SUI1| Length = 108 Score = 58.5 bits (140), Expect = 4e-09 Identities = 25/46 (54%), Positives = 36/46 (78%) Frame = +2 Query: 170 AFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307 +FDPFA+ ++ A S NY+H+R+QQRNGRK+LTTVQG+ ++Y Sbjct: 8 SFDPFADTGDDE----ASSSNYIHIRIQQRNGRKTLTTVQGIPEEY 49
>SUI1_YEAST (P32911) Protein translation factor SUI1| Length = 108 Score = 55.8 bits (133), Expect = 3e-08 Identities = 23/46 (50%), Positives = 36/46 (78%) Frame = +2 Query: 170 AFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307 +FDPFA+ +++ + NY+H+R+QQRNGRK+LTTVQG+ ++Y Sbjct: 8 SFDPFADTGDDETA----TSNYIHIRIQQRNGRKTLTTVQGVPEEY 49
>SUI1_SCHPO (P79060) Protein translation factor sui1| Length = 109 Score = 50.1 bits (118), Expect = 1e-06 Identities = 23/44 (52%), Positives = 32/44 (72%) Frame = +2 Query: 176 DPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307 DPFA+ +D A N +H+R+QQRNGRK+LTTVQGL +++ Sbjct: 11 DPFADTGDDD----AQPLNNIHIRIQQRNGRKTLTTVQGLPREF 50
>SUI1_ANOGA (P42678) Protein translation factor SUI1 homolog| Length = 110 Score = 50.1 bits (118), Expect = 1e-06 Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Frame = +2 Query: 149 LDVQVPTAFDPFAEA-NAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307 + +Q FDPFA+A D G VH+R+QQRNGRK+LTTVQGL +Y Sbjct: 1 MSIQNLNTFDPFADAIKGADYDVQDG---LVHIRIQQRNGRKTLTTVQGLSAEY 51
>SUI1_DROME (Q9VZS3) Protein translation factor SUI1 homolog| Length = 110 Score = 48.1 bits (113), Expect = 5e-06 Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 3/56 (5%) Frame = +2 Query: 149 LDVQVPTAFDPFAEA---NAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307 + +Q DPFA+A N +D G VH+R+QQRNGRK+LTTVQGL +Y Sbjct: 1 MSIQNLNTRDPFADAIKGNDDDIQDGL-----VHIRIQQRNGRKTLTTVQGLSAEY 51
>EIF1_CHICK (P51971) Eukaryotic translation initiation factor 1 (eIF1) (Protein| translation factor SUI1 homolog) (Fragment) Length = 79 Score = 36.6 bits (83), Expect = 0.016 Identities = 15/20 (75%), Positives = 18/20 (90%) Frame = +2 Query: 248 VQQRNGRKSLTTVQGLKKDY 307 +QQRNGRK+LTTVQG+ DY Sbjct: 1 IQQRNGRKTLTTVQGIADDY 20
>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)| Length = 1518 Score = 30.4 bits (67), Expect = 1.2 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = -3 Query: 257 AAGHAHAHSSLIQHQRRSPQHLPQQTDQKQLEPGRRDQ 144 +AG +H Q Q++SP H PQQ Q+Q + ++ Q Sbjct: 736 SAGQSHGQHP--QQQQQSPHHQPQQQQQQQQQQSQQQQ 771
>BAR3_CHITE (Q03376) Balbiani ring protein 3 precursor| Length = 1700 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = +1 Query: 190 GKC*GLRRWCWIKELCACACPAAQRKKES 276 GKC G + WC + C C CP AQ+K +S Sbjct: 1372 GKCTGAQVWC--SKACKCVCP-AQKKCDS 1397 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 22/50 (44%) Frame = +1 Query: 190 GKC*GLRRWC----------------------WIKELCACACPAAQRKKE 273 GKC G + WC W + C+CACPA +K+ Sbjct: 206 GKCQGSKIWCKNNCRCICPTAEPAGGCSAPLKWDDDKCSCACPAKMEEKK 255 Score = 27.7 bits (60), Expect = 7.7 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +1 Query: 190 GKC*GLRRWCWIKELCACACPAAQR 264 G C G + WC ++ CAC CP A + Sbjct: 117 GGCSGSQIWC--EKSCACVCPNADK 139
>ARSD_HUMAN (P51689) Arylsulfatase D precursor (EC 3.1.6.-) (ASD)| Length = 593 Score = 28.5 bits (62), Expect = 4.5 Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%) Frame = -1 Query: 115 PQTDDALFIVL-MCELVRWCEPRTANA 38 P D+L ++L +C L++ CEP+TANA Sbjct: 12 PAARDSLPVLLFLCLLLKTCEPKTANA 38
>CAUP_DROME (P54269) Homeobox protein caupolican| Length = 693 Score = 27.7 bits (60), Expect = 7.7 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -3 Query: 248 HAHAHSSLIQHQRRSPQHLPQQTDQKQLEPGRRDQ 144 H H H +QH ++ Q QQ +Q+QL+ + DQ Sbjct: 393 HTHPHPQQMQHHQQQQQ---QQQNQQQLQHHQMDQ 424
>TPSN_CHICK (O73895) Tapasin precursor (TPSN) (TPN) (TAP-binding protein)| (TAP-associated protein) Length = 430 Score = 27.3 bits (59), Expect = 10.0 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%) Frame = -1 Query: 136 LVVWFDWPQTDD--ALFIV--LMCELVRWCEPRTANAGEEEK 23 L+ + P +D LF+V ++C L+RW P+ A EE K Sbjct: 386 LLAGTEGPHLEDITGLFLVAFVLCGLIRWLYPKAARPKEETK 427
>RXINP_HUMAN (Q96RL1) Retinoid X receptor-interacting protein 110| (Receptor-associated protein 80) (Nuclear zinc finger protein RAP80) Length = 719 Score = 27.3 bits (59), Expect = 10.0 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = -1 Query: 286 NSCQTLSSVALLDTHMHIVL*SSTSAGVLSICLSKRIKSSWNLDVE 149 NS SVA L + +VL +SA +++C ++ SS D+E Sbjct: 414 NSVPASQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLE 459
>HR38_DROME (P49869) Probable nuclear hormone receptor HR38 (dHR38)| Length = 1073 Score = 27.3 bits (59), Expect = 10.0 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -3 Query: 257 AAGHAHAHSSLIQHQRRSPQHLPQQTDQKQLEPGRRDQ 144 AAGH H H + + HQ+ Q QQ Q+Q + ++ Q Sbjct: 276 AAGH-HQHHNHLLHQQHHNQQQQQQQQQQQQQQQQQQQ 312 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,427,608 Number of Sequences: 219361 Number of extensions: 646561 Number of successful extensions: 2192 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2079 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2178 length of database: 80,573,946 effective HSP length: 78 effective length of database: 63,463,788 effective search space used: 1523130912 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
