ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SUI1_ORYSA (P33278) Protein translation factor SUI1 homolog (GOS... 105 3e-23
2SUI1_MAIZE (P56330) Protein translation factor SUI1 homolog (GOS... 105 3e-23
3SUI1_SPOST (Q9SM41) Protein translation factor SUI1 homolog 104 6e-23
4SUI12_ARATH (Q94JV4) Protein translation factor SUI1 homolog 2 100 2e-21
5SUI1_BRAOL (Q9SQF4) Protein translation factor SUI1 homolog (Tra... 97 8e-21
6SUI11_ARATH (P41568) Protein translation factor SUI1 homolog 1 97 8e-21
7SUI1_SALBA (O48650) Protein translation factor SUI1 homolog 96 2e-20
8SUI1_PIMBR (O82569) Protein translation factor SUI1 homolog 79 3e-15
9EIF1_PONPY (Q5RFF4) Eukaryotic translation initiation factor 1 (... 64 7e-11
10EIF1_MOUSE (P48024) Eukaryotic translation initiation factor 1 (... 64 7e-11
11EIF1_HUMAN (P41567) Eukaryotic translation initiation factor 1 (... 64 7e-11
12EIF1_BOVIN (Q5E938) Eukaryotic translation initiation factor 1 (... 64 7e-11
13EIF1B_PIG (P61220) Eukaryotic translation initiation factor 1b (... 64 7e-11
14EIF1B_MOUSE (Q9CXU9) Eukaryotic translation initiation factor 1b... 64 7e-11
15EIF1B_MACFA (Q4R4X9) Eukaryotic translation initiation factor 1b... 64 7e-11
16EIF1B_HUMAN (O60739) Eukaryotic translation initiation factor 1b... 64 7e-11
17SUI1_ASHGO (Q755R1) Protein translation factor SUI1 59 4e-09
18SUI1_YEAST (P32911) Protein translation factor SUI1 56 3e-08
19SUI1_SCHPO (P79060) Protein translation factor sui1 50 1e-06
20SUI1_ANOGA (P42678) Protein translation factor SUI1 homolog 50 1e-06
21SUI1_DROME (Q9VZS3) Protein translation factor SUI1 homolog 48 5e-06
22EIF1_CHICK (P51971) Eukaryotic translation initiation factor 1 (... 37 0.016
23HR4_DROME (Q9W539) Hormone receptor 4 (dHR4) 30 1.2
24BAR3_CHITE (Q03376) Balbiani ring protein 3 precursor 30 1.5
25ARSD_HUMAN (P51689) Arylsulfatase D precursor (EC 3.1.6.-) (ASD) 28 4.5
26CAUP_DROME (P54269) Homeobox protein caupolican 28 7.7
27TPSN_CHICK (O73895) Tapasin precursor (TPSN) (TPN) (TAP-binding ... 27 10.0
28RXINP_HUMAN (Q96RL1) Retinoid X receptor-interacting protein 110... 27 10.0
29HR38_DROME (P49869) Probable nuclear hormone receptor HR38 (dHR38) 27 10.0

>SUI1_ORYSA (P33278) Protein translation factor SUI1 homolog (GOS2 protein)|
          Length = 115

 Score =  105 bits (262), Expect = 3e-23
 Identities = 49/57 (85%), Positives = 55/57 (96%)
 Frame = +2

Query: 140 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDYS 310
           MSDLD+Q+PTAFDPFAEANA DSGA AGSK+YVHVR+QQRNGRKSLTTVQGLKK++S
Sbjct: 1   MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFS 57



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>SUI1_MAIZE (P56330) Protein translation factor SUI1 homolog (GOS2 protein)|
          Length = 115

 Score =  105 bits (262), Expect = 3e-23
 Identities = 49/57 (85%), Positives = 55/57 (96%)
 Frame = +2

Query: 140 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDYS 310
           MSDLD+Q+PTAFDPFAEANA DSGA AGSK+YVHVR+QQRNGRKSLTTVQGLKK++S
Sbjct: 1   MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFS 57



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>SUI1_SPOST (Q9SM41) Protein translation factor SUI1 homolog|
          Length = 115

 Score =  104 bits (259), Expect = 6e-23
 Identities = 48/57 (84%), Positives = 55/57 (96%)
 Frame = +2

Query: 140 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDYS 310
           MSDLD+Q+PTAFDPF+EANA DSGA AGSK+YVHVR+QQRNGRKSLTTVQGLKK++S
Sbjct: 1   MSDLDIQIPTAFDPFSEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFS 57



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>SUI12_ARATH (Q94JV4) Protein translation factor SUI1 homolog 2|
          Length = 113

 Score = 99.8 bits (247), Expect = 2e-21
 Identities = 49/57 (85%), Positives = 54/57 (94%)
 Frame = +2

Query: 140 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDYS 310
           MSDL+VQVPTAFDPFA+ANAEDSGAG  +K YVH+RVQQRNGRKSLTTVQGLKK+YS
Sbjct: 1   MSDLEVQVPTAFDPFADANAEDSGAG--TKEYVHIRVQQRNGRKSLTTVQGLKKEYS 55



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>SUI1_BRAOL (Q9SQF4) Protein translation factor SUI1 homolog (Translation|
           initiation factor nps45)
          Length = 113

 Score = 97.4 bits (241), Expect = 8e-21
 Identities = 48/57 (84%), Positives = 53/57 (92%)
 Frame = +2

Query: 140 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDYS 310
           MS+LD QVPTAFDPFA+ANAEDSGAG  +K YVH+RVQQRNGRKSLTTVQGLKK+YS
Sbjct: 1   MSELDSQVPTAFDPFADANAEDSGAG--TKEYVHIRVQQRNGRKSLTTVQGLKKEYS 55



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>SUI11_ARATH (P41568) Protein translation factor SUI1 homolog 1|
          Length = 113

 Score = 97.4 bits (241), Expect = 8e-21
 Identities = 48/57 (84%), Positives = 53/57 (92%)
 Frame = +2

Query: 140 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDYS 310
           MS+LD QVPTAFDPFA+ANAEDSGAG  +K YVH+RVQQRNGRKSLTTVQGLKK+YS
Sbjct: 1   MSELDSQVPTAFDPFADANAEDSGAG--TKEYVHIRVQQRNGRKSLTTVQGLKKEYS 55



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>SUI1_SALBA (O48650) Protein translation factor SUI1 homolog|
          Length = 113

 Score = 96.3 bits (238), Expect = 2e-20
 Identities = 48/57 (84%), Positives = 52/57 (91%)
 Frame = +2

Query: 140 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDYS 310
           MS+ D  +PTAFDPFAEANAEDSGAG  +K+YVHVRVQQRNGRKSLTTVQGLKKDYS
Sbjct: 1   MSEFDNAIPTAFDPFAEANAEDSGAG--TKDYVHVRVQQRNGRKSLTTVQGLKKDYS 55



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>SUI1_PIMBR (O82569) Protein translation factor SUI1 homolog|
          Length = 113

 Score = 79.0 bits (193), Expect = 3e-15
 Identities = 38/57 (66%), Positives = 45/57 (78%)
 Frame = +2

Query: 140 MSDLDVQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDYS 310
           M D D+Q+PT+FDPFAEA   D  A   +K YVH+R+QQRNGRKSLTTVQGLKK+ S
Sbjct: 1   MVDSDIQIPTSFDPFAEAEITD--ATGSTKEYVHIRIQQRNGRKSLTTVQGLKKELS 55



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>EIF1_PONPY (Q5RFF4) Eukaryotic translation initiation factor 1 (eIF1) (Protein|
           translation factor SUI1 homolog)
          Length = 113

 Score = 64.3 bits (155), Expect = 7e-11
 Identities = 27/46 (58%), Positives = 38/46 (82%)
 Frame = +2

Query: 170 AFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307
           +FDPFA+A+  D    AG+++Y+H+R+QQRNGRK+LTTVQG+  DY
Sbjct: 9   SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDY 54



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>EIF1_MOUSE (P48024) Eukaryotic translation initiation factor 1 (eIF1) (Protein|
           translation factor SUI1 homolog)
          Length = 113

 Score = 64.3 bits (155), Expect = 7e-11
 Identities = 27/46 (58%), Positives = 38/46 (82%)
 Frame = +2

Query: 170 AFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307
           +FDPFA+A+  D    AG+++Y+H+R+QQRNGRK+LTTVQG+  DY
Sbjct: 9   SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDY 54



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>EIF1_HUMAN (P41567) Eukaryotic translation initiation factor 1 (eIF1) (Protein|
           translation factor SUI1 homolog) (Sui1iso1) (A121)
          Length = 113

 Score = 64.3 bits (155), Expect = 7e-11
 Identities = 27/46 (58%), Positives = 38/46 (82%)
 Frame = +2

Query: 170 AFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307
           +FDPFA+A+  D    AG+++Y+H+R+QQRNGRK+LTTVQG+  DY
Sbjct: 9   SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDY 54



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>EIF1_BOVIN (Q5E938) Eukaryotic translation initiation factor 1 (eIF1) (Protein|
           translation factor SUI1 homolog)
          Length = 113

 Score = 64.3 bits (155), Expect = 7e-11
 Identities = 27/46 (58%), Positives = 38/46 (82%)
 Frame = +2

Query: 170 AFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307
           +FDPFA+A+  D    AG+++Y+H+R+QQRNGRK+LTTVQG+  DY
Sbjct: 9   SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDY 54



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>EIF1B_PIG (P61220) Eukaryotic translation initiation factor 1b (eIF1b)|
           (Protein translation factor SUI1 homolog GC20)
          Length = 113

 Score = 64.3 bits (155), Expect = 7e-11
 Identities = 28/51 (54%), Positives = 39/51 (76%)
 Frame = +2

Query: 155 VQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307
           +Q   +FDPFA+A   D    AG+++Y+H+R+QQRNGRK+LTTVQG+  DY
Sbjct: 4   IQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDY 54



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>EIF1B_MOUSE (Q9CXU9) Eukaryotic translation initiation factor 1b (eIF1b)|
          Length = 113

 Score = 64.3 bits (155), Expect = 7e-11
 Identities = 28/51 (54%), Positives = 39/51 (76%)
 Frame = +2

Query: 155 VQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307
           +Q   +FDPFA+A   D    AG+++Y+H+R+QQRNGRK+LTTVQG+  DY
Sbjct: 4   IQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDY 54



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>EIF1B_MACFA (Q4R4X9) Eukaryotic translation initiation factor 1b (eIF1b)|
          Length = 113

 Score = 64.3 bits (155), Expect = 7e-11
 Identities = 28/51 (54%), Positives = 39/51 (76%)
 Frame = +2

Query: 155 VQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307
           +Q   +FDPFA+A   D    AG+++Y+H+R+QQRNGRK+LTTVQG+  DY
Sbjct: 4   IQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDY 54



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>EIF1B_HUMAN (O60739) Eukaryotic translation initiation factor 1b (eIF1b)|
           (Protein translation factor SUI1 homolog GC20)
          Length = 113

 Score = 64.3 bits (155), Expect = 7e-11
 Identities = 28/51 (54%), Positives = 39/51 (76%)
 Frame = +2

Query: 155 VQVPTAFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307
           +Q   +FDPFA+A   D    AG+++Y+H+R+QQRNGRK+LTTVQG+  DY
Sbjct: 4   IQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDY 54



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>SUI1_ASHGO (Q755R1) Protein translation factor SUI1|
          Length = 108

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 25/46 (54%), Positives = 36/46 (78%)
 Frame = +2

Query: 170 AFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307
           +FDPFA+   ++    A S NY+H+R+QQRNGRK+LTTVQG+ ++Y
Sbjct: 8   SFDPFADTGDDE----ASSSNYIHIRIQQRNGRKTLTTVQGIPEEY 49



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>SUI1_YEAST (P32911) Protein translation factor SUI1|
          Length = 108

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 23/46 (50%), Positives = 36/46 (78%)
 Frame = +2

Query: 170 AFDPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307
           +FDPFA+   +++     + NY+H+R+QQRNGRK+LTTVQG+ ++Y
Sbjct: 8   SFDPFADTGDDETA----TSNYIHIRIQQRNGRKTLTTVQGVPEEY 49



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>SUI1_SCHPO (P79060) Protein translation factor sui1|
          Length = 109

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 23/44 (52%), Positives = 32/44 (72%)
 Frame = +2

Query: 176 DPFAEANAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307
           DPFA+   +D    A   N +H+R+QQRNGRK+LTTVQGL +++
Sbjct: 11  DPFADTGDDD----AQPLNNIHIRIQQRNGRKTLTTVQGLPREF 50



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>SUI1_ANOGA (P42678) Protein translation factor SUI1 homolog|
          Length = 110

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
 Frame = +2

Query: 149 LDVQVPTAFDPFAEA-NAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307
           + +Q    FDPFA+A    D     G    VH+R+QQRNGRK+LTTVQGL  +Y
Sbjct: 1   MSIQNLNTFDPFADAIKGADYDVQDG---LVHIRIQQRNGRKTLTTVQGLSAEY 51



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>SUI1_DROME (Q9VZS3) Protein translation factor SUI1 homolog|
          Length = 110

 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
 Frame = +2

Query: 149 LDVQVPTAFDPFAEA---NAEDSGAGAGSKNYVHVRVQQRNGRKSLTTVQGLKKDY 307
           + +Q     DPFA+A   N +D   G      VH+R+QQRNGRK+LTTVQGL  +Y
Sbjct: 1   MSIQNLNTRDPFADAIKGNDDDIQDGL-----VHIRIQQRNGRKTLTTVQGLSAEY 51



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>EIF1_CHICK (P51971) Eukaryotic translation initiation factor 1 (eIF1) (Protein|
           translation factor SUI1 homolog) (Fragment)
          Length = 79

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +2

Query: 248 VQQRNGRKSLTTVQGLKKDY 307
           +QQRNGRK+LTTVQG+  DY
Sbjct: 1   IQQRNGRKTLTTVQGIADDY 20



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>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)|
          Length = 1518

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 257 AAGHAHAHSSLIQHQRRSPQHLPQQTDQKQLEPGRRDQ 144
           +AG +H      Q Q++SP H PQQ  Q+Q +  ++ Q
Sbjct: 736 SAGQSHGQHP--QQQQQSPHHQPQQQQQQQQQQSQQQQ 771



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>BAR3_CHITE (Q03376) Balbiani ring protein 3 precursor|
          Length = 1700

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 190  GKC*GLRRWCWIKELCACACPAAQRKKES 276
            GKC G + WC   + C C CP AQ+K +S
Sbjct: 1372 GKCTGAQVWC--SKACKCVCP-AQKKCDS 1397



 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 22/50 (44%)
 Frame = +1

Query: 190 GKC*GLRRWC----------------------WIKELCACACPAAQRKKE 273
           GKC G + WC                      W  + C+CACPA   +K+
Sbjct: 206 GKCQGSKIWCKNNCRCICPTAEPAGGCSAPLKWDDDKCSCACPAKMEEKK 255



 Score = 27.7 bits (60), Expect = 7.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 190 GKC*GLRRWCWIKELCACACPAAQR 264
           G C G + WC  ++ CAC CP A +
Sbjct: 117 GGCSGSQIWC--EKSCACVCPNADK 139



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>ARSD_HUMAN (P51689) Arylsulfatase D precursor (EC 3.1.6.-) (ASD)|
          Length = 593

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -1

Query: 115 PQTDDALFIVL-MCELVRWCEPRTANA 38
           P   D+L ++L +C L++ CEP+TANA
Sbjct: 12  PAARDSLPVLLFLCLLLKTCEPKTANA 38



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>CAUP_DROME (P54269) Homeobox protein caupolican|
          Length = 693

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 248 HAHAHSSLIQHQRRSPQHLPQQTDQKQLEPGRRDQ 144
           H H H   +QH ++  Q   QQ +Q+QL+  + DQ
Sbjct: 393 HTHPHPQQMQHHQQQQQ---QQQNQQQLQHHQMDQ 424



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>TPSN_CHICK (O73895) Tapasin precursor (TPSN) (TPN) (TAP-binding protein)|
           (TAP-associated protein)
          Length = 430

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -1

Query: 136 LVVWFDWPQTDD--ALFIV--LMCELVRWCEPRTANAGEEEK 23
           L+   + P  +D   LF+V  ++C L+RW  P+ A   EE K
Sbjct: 386 LLAGTEGPHLEDITGLFLVAFVLCGLIRWLYPKAARPKEETK 427



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>RXINP_HUMAN (Q96RL1) Retinoid X receptor-interacting protein 110|
           (Receptor-associated protein 80) (Nuclear zinc finger
           protein RAP80)
          Length = 719

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 286 NSCQTLSSVALLDTHMHIVL*SSTSAGVLSICLSKRIKSSWNLDVE 149
           NS     SVA L +   +VL   +SA  +++C   ++ SS   D+E
Sbjct: 414 NSVPASQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLE 459



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>HR38_DROME (P49869) Probable nuclear hormone receptor HR38 (dHR38)|
          Length = 1073

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 257 AAGHAHAHSSLIQHQRRSPQHLPQQTDQKQLEPGRRDQ 144
           AAGH H H + + HQ+   Q   QQ  Q+Q +  ++ Q
Sbjct: 276 AAGH-HQHHNHLLHQQHHNQQQQQQQQQQQQQQQQQQQ 312


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,427,608
Number of Sequences: 219361
Number of extensions: 646561
Number of successful extensions: 2192
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 2079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2178
length of database: 80,573,946
effective HSP length: 78
effective length of database: 63,463,788
effective search space used: 1523130912
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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