Clone Name | basd2g03 |
---|---|
Clone Library Name | barley_pub |
>GSHB_NITEU (Q82V16) Glutathione synthetase (EC 6.3.2.3) (Glutathione synthase)| (GSH synthetase) (GSH-S) (GSHase) Length = 320 Score = 31.6 bits (70), Expect = 1.3 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%) Frame = -3 Query: 379 VEQRHVVWHAGEVL---RRLPLDDPPEGDHRRQEE 284 ++Q + W +V+ R L L DPPEGDHR EE Sbjct: 37 LQQNDLAWKDHQVIGFARPLTLLDPPEGDHRWYEE 71
>PGFRB_CANFA (Q6QNF3) Beta platelet-derived growth factor receptor precursor (EC| 2.7.10.1) (PDGF-R-beta) Length = 1103 Score = 31.2 bits (69), Expect = 1.7 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Frame = -3 Query: 406 QPVPCG*EAVEQRHVVWHAGEVLRRLPLDDPPE--GDHRRQEEEQSNNIARDPEEE 245 Q V C + Q H+ W L+R P + PP G+ +E + N+ PE++ Sbjct: 432 QTVRCRGRGMPQPHLTWSTCSDLKRCPRELPPTPLGNSSEEESQLETNVTYWPEDQ 487
>STB3_YEAST (Q12427) Protein STB3 (SIN3-binding protein 3)| Length = 513 Score = 30.8 bits (68), Expect = 2.3 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = -1 Query: 414 TNGNPYHADRRQLSSVMLYGTPEKSSVDFLLMILQKVTTGDRKRNRAITLPETP 253 +NG+PY RR+ V TPE + +I QK+ R R R+ P TP Sbjct: 242 SNGDPYSFGRRRSQVVFADSTPENIEHE---IIAQKIRPLLRNRRRSSIKPHTP 292
>PGFRB_HUMAN (P09619) Beta platelet-derived growth factor receptor precursor (EC| 2.7.10.1) (PDGF-R-beta) (CD140b antigen) Length = 1106 Score = 30.0 bits (66), Expect = 3.9 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Frame = -3 Query: 406 QPVPCG*EAVEQRHVVWHAGEVLRRLPLDDPPE--GDHRRQEEEQSNNIARDPEEE 245 Q V C + Q +++W A L+R P + PP G+ +E + N+ EE+ Sbjct: 432 QTVRCRGRGMPQPNIIWSACRDLKRCPRELPPTLLGNSSEEESQLETNVTYWEEEQ 487
>YM8M_YEAST (Q03263) Hypothetical transport protein YMR279C| Length = 540 Score = 29.3 bits (64), Expect = 6.6 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +2 Query: 383 LLSAWYGLPFVSPNNILVTTINGAGSVIEAIYVVIF 490 LL AWY +P P NI +++ GS + I +++F Sbjct: 246 LLMAWYSIPNNVPTNIHGLSMDWTGSALAIIGLILF 281
>COAT_TYLCA (P36278) Coat protein (CP)| Length = 256 Score = 29.3 bits (64), Expect = 6.6 Identities = 17/34 (50%), Positives = 20/34 (58%) Frame = -3 Query: 439 RHQDVVRGHERQPVPCG*EAVEQRHVVWHAGEVL 338 R DV RG E PC ++ EQRH V H G+VL Sbjct: 60 RSPDVPRGCEG---PCKVQSYEQRHDVAHVGKVL 90
>FMN1B_MOUSE (Q05859) Formin-1 isoform IV (Limb deformity protein)| Length = 1206 Score = 29.3 bits (64), Expect = 6.6 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 6/67 (8%) Frame = -3 Query: 418 GHERQPVPCG*EAVEQRHVVWHAGEVLRRLPLDDPPEGDHRRQEEEQSNN------IARD 257 G+E P +V+ V+W G ++ D +GD +EE + + + Sbjct: 119 GYELSPATV---SVDNEEVIWVRGTLVHTTSDSDSEDGDQEAEEESSLDTQKPTTVVLCE 175 Query: 256 PEEEPRD 236 P +EP+D Sbjct: 176 PSQEPKD 182
>EHMT1_HUMAN (Q9H9B1) Histone-lysine N-methyltransferase, H3 lysine-9 specific 5| (EC 2.1.1.43) (Histone H3-K9 methyltransferase 5) (H3-K9-HMTase 5) (Euchromatic histone-lysine N-methyltransferase 1) (Eu-HMTase1) (G9a-like protein 1) (GLP1) Length = 1267 Score = 29.3 bits (64), Expect = 6.6 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Frame = -3 Query: 475 DGLDHRPRAVDRR-HQDVVRGHERQPVPC 392 D RP V+R +D+ RG+ER P+PC Sbjct: 966 DSAPDRPSPVERIVSRDIARGYERIPIPC 994
>DAL81_YEAST (P21657) Transcriptional activator protein DAL81 (Regulatory| protein UGA35) Length = 970 Score = 28.9 bits (63), Expect = 8.6 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = -1 Query: 399 YHADRRQLSSVMLYGTPEKSSVDFLLMILQKVTTGDRKRNRAITL-PETPKKNLAICSIS 223 YH+ + LS M Y TP+K + + L + T R L P+TPK+ + +C + Sbjct: 595 YHSLPKNLS--MSYATPQKLNSNSTLTLAYFATEITLHRKIICALNPQTPKELVQVCRTA 652 Query: 222 AR 217 AR Sbjct: 653 AR 654
>DNAA_TREPA (O83047) Chromosomal replication initiator protein dnaA| Length = 464 Score = 28.9 bits (63), Expect = 8.6 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = -1 Query: 93 LSSQRLGIQYRARQHGSCVYGC 28 LS+ LGI++ R H + +YGC Sbjct: 414 LSTTELGIEFGGRDHSTVIYGC 435
>CN100_HUMAN (Q9P055) Medulloblastoma antigen MU-MB-50.4| Length = 326 Score = 28.9 bits (63), Expect = 8.6 Identities = 14/51 (27%), Positives = 28/51 (54%) Frame = +2 Query: 350 GVPYNMTLLNCLLSAWYGLPFVSPNNILVTTINGAGSVIEAIYVVIFLIFA 502 GV Y + +LS WY + + +P+ VTT++ + +Y ++F+ +A Sbjct: 128 GVLYIRSCRVLMLSDWYTMLY-NPSPDYVTTVHCTHEAVYPLYTIVFIYYA 177 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,890,569 Number of Sequences: 219361 Number of extensions: 1166747 Number of successful extensions: 4291 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4064 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4265 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3812186532 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)