Clone Name | basd2g03 |
---|---|
Clone Library Name | barley_pub |
>gb|AY106071.1| Zea mays PCO141993 mRNA sequence Length = 1300 Score = 381 bits (192), Expect = e-102 Identities = 258/280 (92%) Strand = Plus / Plus Query: 224 gagatggagcatatcgcgaggttcttcttcggggtctctggcaatgttattgctctgttc 283 ||||||||||||||||| |||||||||||||| || ||||| ||||| ||||| || ||| Sbjct: 239 gagatggagcatatcgccaggttcttcttcggagtttctgggaatgtcattgcgctcttc 298 Query: 284 ctcttcctgtcgccggtggtcaccttctggaggatcatcaagaggaagtcgacggaggac 343 |||||||||||||| || ||||||||||||||| |||||| || | ||||||||||||| Sbjct: 299 ctcttcctgtcgcctgttgtcaccttctggagggtcatcaggaagcggtcgacggaggac 358 Query: 344 ttctccggcgtgccatacaacatgacgctgctcaactgcctcctatccgcatggtacggg 403 |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| Sbjct: 359 ttctccggcgtgccctacaacatgacgctgctcaactgcctcctatcggcttggtacggc 418 Query: 404 ttgccgttcgtgtccccgaacaacatcctggtgacgacgatcaacggcgcggggtcggtg 463 |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct: 419 ctgccgttcgtgtccccgaacaacatcctggtgtcgacgatcaacgggacggggtcggtg 478 Query: 464 atcgaggccatctacgtggtgatcttcctcatcttcgcgg 503 |||||||||||||||||||||||||||||||||||||||| Sbjct: 479 atcgaggccatctacgtggtgatcttcctcatcttcgcgg 518
>ref|NM_190168.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 822 Score = 347 bits (175), Expect = 2e-92 Identities = 253/279 (90%) Strand = Plus / Plus Query: 227 atggagcatatcgcgaggttcttcttcggggtctctggcaatgttattgctctgttcctc 286 |||||||| ||||||||||||||||| || || || |||||||| || ||||| ||||| Sbjct: 1 atggagcacatcgcgaggttcttctttggagtttccggcaatgtcatcgctctcttcctg 60 Query: 287 ttcctgtcgccggtggtcaccttctggaggatcatcaagaggaagtcgacggaggacttc 346 ||||| ||||| || ||||||||||||||||||||||||| || || |||||||||||| Sbjct: 61 ttcctttcgccagttgtcaccttctggaggatcatcaagaagagatcaacggaggacttc 120 Query: 347 tccggcgtgccatacaacatgacgctgctcaactgcctcctatccgcatggtacgggttg 406 ||||||||||| ||||||||||| || ||||||||||| ||||| || ||||||||| || Sbjct: 121 tccggcgtgccttacaacatgacacttctcaactgcctgctatctgcttggtacgggctg 180 Query: 407 ccgttcgtgtccccgaacaacatcctggtgacgacgatcaacggcgcggggtcggtgatc 466 ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 181 ccgttcgtgtcaccgaacaacatcctggtgacgacgatcaacgggacggggtcggtgatc 240 Query: 467 gaggccatctacgtggtgatcttcctcatcttcgcggag 505 ||||||||||||||||||||||||||||||||||||||| Sbjct: 241 gaggccatctacgtggtgatcttcctcatcttcgcggag 279
>dbj|AK067960.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123F10, full insert sequence Length = 1208 Score = 347 bits (175), Expect = 2e-92 Identities = 253/279 (90%) Strand = Plus / Plus Query: 227 atggagcatatcgcgaggttcttcttcggggtctctggcaatgttattgctctgttcctc 286 |||||||| ||||||||||||||||| || || || |||||||| || ||||| ||||| Sbjct: 153 atggagcacatcgcgaggttcttctttggagtttccggcaatgtcatcgctctcttcctg 212 Query: 287 ttcctgtcgccggtggtcaccttctggaggatcatcaagaggaagtcgacggaggacttc 346 ||||| ||||| || ||||||||||||||||||||||||| || || |||||||||||| Sbjct: 213 ttcctttcgccagttgtcaccttctggaggatcatcaagaagagatcaacggaggacttc 272 Query: 347 tccggcgtgccatacaacatgacgctgctcaactgcctcctatccgcatggtacgggttg 406 ||||||||||| ||||||||||| || ||||||||||| ||||| || ||||||||| || Sbjct: 273 tccggcgtgccttacaacatgacacttctcaactgcctgctatctgcttggtacgggctg 332 Query: 407 ccgttcgtgtccccgaacaacatcctggtgacgacgatcaacggcgcggggtcggtgatc 466 ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 333 ccgttcgtgtcaccgaacaacatcctggtgacgacgatcaacgggacggggtcggtgatc 392 Query: 467 gaggccatctacgtggtgatcttcctcatcttcgcggag 505 ||||||||||||||||||||||||||||||||||||||| Sbjct: 393 gaggccatctacgtggtgatcttcctcatcttcgcggag 431
>dbj|AK099531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031J21, full insert sequence Length = 1161 Score = 339 bits (171), Expect = 5e-90 Identities = 252/279 (90%) Strand = Plus / Plus Query: 227 atggagcatatcgcgaggttcttcttcggggtctctggcaatgttattgctctgttcctc 286 |||||||| ||||||||||||||||| || || || |||||||| || ||||| ||||| Sbjct: 145 atggagcacatcgcgaggttcttctttggagtttccggcaatgtcatcgctctcttcctg 204 Query: 287 ttcctgtcgccggtggtcaccttctggaggatcatcaagaggaagtcgacggaggacttc 346 ||||| ||||| || ||||||||||||||||||||||||| || || |||||||||||| Sbjct: 205 ttcctttcgccagttgtcaccttctggaggatcatcaagaagagatcaacggaggacttc 264 Query: 347 tccggcgtgccatacaacatgacgctgctcaactgcctcctatccgcatggtacgggttg 406 ||||||||||| ||||||||||| || ||||||||||| ||||| || ||||||||| || Sbjct: 265 tccggcgtgccttacaacatgacacttctcaactgcctgctatctgcttggtacgggctg 324 Query: 407 ccgttcgtgtccccgaacaacatcctggtgacgacgatcaacggcgcggggtcggtgatc 466 ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 325 ccgttcgtgtcaccgaacaacatcctggtgacgacgatcaacgggacggggtcggtgatc 384 Query: 467 gaggccatctacgtggtgatcttcctcatcttcgcggag 505 |||||||||||||||||||| |||||||||||||||||| Sbjct: 385 gaggccatctacgtggtgatgttcctcatcttcgcggag 423
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 186 bits (94), Expect = 5e-44 Identities = 106/110 (96%) Strand = Plus / Plus Query: 396 ggtacgggttgccgttcgtgtccccgaacaacatcctggtgacgacgatcaacggcgcgg 455 |||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct: 38249172 ggtacgggctgccgttcgtgtcaccgaacaacatcctggtgacgacgatcaacgggacgg 38249231 Query: 456 ggtcggtgatcgaggccatctacgtggtgatcttcctcatcttcgcggag 505 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 38249232 ggtcggtgatcgaggccatctacgtggtgatcttcctcatcttcgcggag 38249281 Score = 115 bits (58), Expect = 1e-22 Identities = 88/98 (89%) Strand = Plus / Plus Query: 302 gtcaccttctggaggatcatcaagaggaagtcgacggaggacttctccggcgtgccatac 361 ||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||| Sbjct: 38248182 gtcaccttctggaggatcatcaagaagagatcaacggaggacttctccggcgtgccttac 38248241 Query: 362 aacatgacgctgctcaactgcctcctatccgcatggta 399 |||||||| || ||||||||||| ||||| || ||||| Sbjct: 38248242 aacatgacacttctcaactgcctgctatctgcttggta 38248279 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 227 atggagcatatcgcgaggttcttctt 252 |||||||| ||||||||||||||||| Sbjct: 38247463 atggagcacatcgcgaggttcttctt 38247488
>dbj|AP003227.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0018C10 Length = 200183 Score = 186 bits (94), Expect = 5e-44 Identities = 106/110 (96%) Strand = Plus / Plus Query: 396 ggtacgggttgccgttcgtgtccccgaacaacatcctggtgacgacgatcaacggcgcgg 455 |||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct: 168406 ggtacgggctgccgttcgtgtcaccgaacaacatcctggtgacgacgatcaacgggacgg 168465 Query: 456 ggtcggtgatcgaggccatctacgtggtgatcttcctcatcttcgcggag 505 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 168466 ggtcggtgatcgaggccatctacgtggtgatcttcctcatcttcgcggag 168515 Score = 115 bits (58), Expect = 1e-22 Identities = 88/98 (89%) Strand = Plus / Plus Query: 302 gtcaccttctggaggatcatcaagaggaagtcgacggaggacttctccggcgtgccatac 361 ||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||| Sbjct: 167416 gtcaccttctggaggatcatcaagaagagatcaacggaggacttctccggcgtgccttac 167475 Query: 362 aacatgacgctgctcaactgcctcctatccgcatggta 399 |||||||| || ||||||||||| ||||| || ||||| Sbjct: 167476 aacatgacacttctcaactgcctgctatctgcttggta 167513 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 227 atggagcatatcgcgaggttcttctt 252 |||||||| ||||||||||||||||| Sbjct: 166697 atggagcacatcgcgaggttcttctt 166722
>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1065E10 Length = 183580 Score = 186 bits (94), Expect = 5e-44 Identities = 106/110 (96%) Strand = Plus / Plus Query: 396 ggtacgggttgccgttcgtgtccccgaacaacatcctggtgacgacgatcaacggcgcgg 455 |||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct: 9997 ggtacgggctgccgttcgtgtcaccgaacaacatcctggtgacgacgatcaacgggacgg 10056 Query: 456 ggtcggtgatcgaggccatctacgtggtgatcttcctcatcttcgcggag 505 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10057 ggtcggtgatcgaggccatctacgtggtgatcttcctcatcttcgcggag 10106 Score = 115 bits (58), Expect = 1e-22 Identities = 88/98 (89%) Strand = Plus / Plus Query: 302 gtcaccttctggaggatcatcaagaggaagtcgacggaggacttctccggcgtgccatac 361 ||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||| Sbjct: 9007 gtcaccttctggaggatcatcaagaagagatcaacggaggacttctccggcgtgccttac 9066 Query: 362 aacatgacgctgctcaactgcctcctatccgcatggta 399 |||||||| || ||||||||||| ||||| || ||||| Sbjct: 9067 aacatgacacttctcaactgcctgctatctgcttggta 9104 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 227 atggagcatatcgcgaggttcttctt 252 |||||||| ||||||||||||||||| Sbjct: 8288 atggagcacatcgcgaggttcttctt 8313
>dbj|AK063475.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-B01, full insert sequence Length = 1211 Score = 163 bits (82), Expect = 7e-37 Identities = 178/210 (84%) Strand = Plus / Plus Query: 260 tctggcaatgttattgctctgttcctcttcctgtcgccggtggtcaccttctggaggatc 319 ||||||||||| || || || ||||||||| | || || ||| || |||||||||||| Sbjct: 258 tctggcaatgtcatcgcgctcttcctcttcttatccccagtgcctactttctggaggatc 317 Query: 320 atcaagaggaagtcgacggaggacttctccggcgtgccatacaacatgacgctgctcaac 379 || |||||| || || ||||| ||||| || ||||||||||||||||| || ||||| Sbjct: 318 attcggaggaaatcaacagaggatttctctggggtgccatacaacatgacactcatcaac 377 Query: 380 tgcctcctatccgcatggtacgggttgccgttcgtgtccccgaacaacatcctggtgacg 439 |||||||| || |||||||||||| |||||||||||||||| ||||||||||||||| || Sbjct: 378 tgcctcctctctgcatggtacgggctgccgttcgtgtccccaaacaacatcctggtgtcg 437 Query: 440 acgatcaacggcgcggggtcggtgatcgag 469 |||||||||||||| || ||||||||||| Sbjct: 438 acgatcaacggcgccggcgcggtgatcgag 467
>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0044P19, complete sequence Length = 176917 Score = 99.6 bits (50), Expect = 9e-18 Identities = 68/74 (91%) Strand = Plus / Plus Query: 396 ggtacgggttgccgttcgtgtccccgaacaacatcctggtgacgacgatcaacggcgcgg 455 |||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||| | Sbjct: 41566 ggtacgggctgccgttcgtgtccccaaacaacatcctggtgtcgacgatcaacggcgccg 41625 Query: 456 ggtcggtgatcgag 469 | ||||||||||| Sbjct: 41626 gcgcggtgatcgag 41639 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 308 ttctggaggatcatcaagaggaagtcgacggaggacttctccggcgtgccatacaacatg 367 |||||||||||||| |||||| || || ||||| ||||| || ||||||||||||||| Sbjct: 40184 ttctggaggatcattcggaggaaatcaacagaggatttctctggggtgccatacaacatg 40243 Query: 368 acgctgctcaactgcctcctatccgcatggta 399 || || ||||||||||||| || |||||||| Sbjct: 40244 acactcatcaactgcctcctctctgcatggta 40275
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 99.6 bits (50), Expect = 9e-18 Identities = 68/74 (91%) Strand = Plus / Plus Query: 396 ggtacgggttgccgttcgtgtccccgaacaacatcctggtgacgacgatcaacggcgcgg 455 |||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||| | Sbjct: 20728342 ggtacgggctgccgttcgtgtccccaaacaacatcctggtgtcgacgatcaacggcgccg 20728401 Query: 456 ggtcggtgatcgag 469 | ||||||||||| Sbjct: 20728402 gcgcggtgatcgag 20728415 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 308 ttctggaggatcatcaagaggaagtcgacggaggacttctccggcgtgccatacaacatg 367 |||||||||||||| |||||| || || ||||| ||||| || ||||||||||||||| Sbjct: 20726960 ttctggaggatcattcggaggaaatcaacagaggatttctctggggtgccatacaacatg 20727019 Query: 368 acgctgctcaactgcctcctatccgcatggta 399 || || ||||||||||||| || |||||||| Sbjct: 20727020 acactcatcaactgcctcctctctgcatggta 20727051
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 283 cctcttcctgtcgccggtggtcaccttctggaggatcatcaag 325 ||||||||| ||||||||| ||||||||||| ||||||||||| Sbjct: 4222169 cctcttcctctcgccggtgctcaccttctggcggatcatcaag 4222127 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 283 cctcttcctgtcgccggtggtcaccttctggaggatcatcaaga 326 ||||||||| ||||||||| |||||||||| |||||||||||| Sbjct: 4375143 cctcttcctctcgccggtgcccaccttctggcggatcatcaaga 4375186 Score = 40.1 bits (20), Expect = 6.9 Identities = 38/44 (86%) Strand = Plus / Plus Query: 283 cctcttcctgtcgccggtggtcaccttctggaggatcatcaaga 326 ||||||||| ||||||||| |||||||| |||||||||||| Sbjct: 4347086 cctcttcctctcgccggtgcccaccttctaccggatcatcaaga 4347129
>dbj|AP005589.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0523B07 Length = 170510 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 283 cctcttcctgtcgccggtggtcaccttctggaggatcatcaag 325 ||||||||| ||||||||| ||||||||||| ||||||||||| Sbjct: 45928 cctcttcctctcgccggtgctcaccttctggcggatcatcaag 45886
>dbj|AP006441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1279D09 Length = 134793 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 283 cctcttcctgtcgccggtggtcaccttctggaggatcatcaaga 326 ||||||||| ||||||||| |||||||||| |||||||||||| Sbjct: 77961 cctcttcctctcgccggtgcccaccttctggcggatcatcaaga 78004 Score = 40.1 bits (20), Expect = 6.9 Identities = 38/44 (86%) Strand = Plus / Plus Query: 283 cctcttcctgtcgccggtggtcaccttctggaggatcatcaaga 326 ||||||||| ||||||||| |||||||| |||||||||||| Sbjct: 49904 cctcttcctctcgccggtgcccaccttctaccggatcatcaaga 49947
>gb|AC153383.1| Mus musculus 6 BAC RP23-168L2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 197962 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 177 agacctccccctctccccccac 198 |||||||||||||||||||||| Sbjct: 65488 agacctccccctctccccccac 65467
>gb|AC167724.6| Mus musculus 10 BAC RP23-331P17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 230186 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 177 agacctccccctctccccccac 198 |||||||||||||||||||||| Sbjct: 84112 agacctccccctctccccccac 84133
>dbj|AK063011.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-A05, full insert sequence Length = 595 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 227 atggagcatatcgcgaggttcttctt 252 |||||||| ||||||||||||||||| Sbjct: 152 atggagcacatcgcgaggttcttctt 177
>gb|AC008369.1|AC008369 Drosophila melanogaster, chromosome 2R, region 52A4-52B4, P1 clones BACR48C01 and DS08592, complete sequence Length = 192366 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 180 cctccccctctccccccacacc 201 |||||||||||||||||||||| Sbjct: 111984 cctccccctctccccccacacc 112005
>gb|AE003810.3| Drosophila melanogaster chromosome 2R, section 40 of 73 of the complete sequence Length = 271178 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 180 cctccccctctccccccacacc 201 |||||||||||||||||||||| Sbjct: 189342 cctccccctctccccccacacc 189363
>dbj|AB225267.1| Aspergillus oryzae cDNA, contig sequence: AoEST2119 Length = 474 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 438 cgacgatcaacggcgcggggt 458 ||||||||||||||||||||| Sbjct: 62 cgacgatcaacggcgcggggt 42
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 438 cgacgatcaacggcgcggggt 458 ||||||||||||||||||||| Sbjct: 349623 cgacgatcaacggcgcggggt 349603
>gb|AC161792.9| Mus musculus chromosome 7, clone RP23-288B12, complete sequence Length = 166375 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 ttgctctgttcctcttcctg 292 |||||||||||||||||||| Sbjct: 93028 ttgctctgttcctcttcctg 93009
>gb|AF289095.1| Clupea harengus microsatellite Cha1020 sequence Length = 250 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 gttattgctctgttcctctt 288 |||||||||||||||||||| Sbjct: 156 gttattgctctgttcctctt 137
>gb|AY738132.1| Tegenaria saeva empty spiracles protein mRNA, partial cds Length = 685 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 tgctctgttcctcttcctgt 293 |||||||||||||||||||| Sbjct: 181 tgctctgttcctcttcctgt 162
>ref|NM_010715.1| Mus musculus ligase I, DNA, ATP-dependent (Lig1), mRNA Length = 3172 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 ttgctctgttcctcttcctg 292 |||||||||||||||||||| Sbjct: 957 ttgctctgttcctcttcctg 938
>gb|BC028287.1| Mus musculus ligase I, DNA, ATP-dependent, mRNA (cDNA clone MGC:25340 IMAGE:4911261), complete cds Length = 3050 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 ttgctctgttcctcttcctg 292 |||||||||||||||||||| Sbjct: 769 ttgctctgttcctcttcctg 750
>gb|AC122168.14| Medicago truncatula clone mth2-4o4, complete sequence Length = 120886 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 ttcttcttcggggtctctgg 264 |||||||||||||||||||| Sbjct: 105098 ttcttcttcggggtctctgg 105079
>emb|AL158819.14| Human DNA sequence from clone RP11-382F24 on chromosome X Contains a NADH dehydrogenase 2 (MTND2) pseudogene, a NADH dehydrogenase 1 (MTND1) pseudogene, the gene for PAGE-5 protein (PAGE-5) and two novel genes, complete sequence Length = 174913 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 180 cctccccctctccccccacaccgt 203 |||||||||||||||| ||||||| Sbjct: 163682 cctccccctctccccctacaccgt 163705
>gb|AC113615.3| Homo sapiens BAC clone RP11-586D19 from 4, complete sequence Length = 164043 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 ctggaggatcatcaagagga 329 |||||||||||||||||||| Sbjct: 4842 ctggaggatcatcaagagga 4823
>emb|CR392365.8| Zebrafish DNA sequence from clone DKEY-171P17 in linkage group 5, complete sequence Length = 168716 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 228 tggagcatatcgcgaggttcttct 251 |||||||| ||||||||||||||| Sbjct: 135371 tggagcatctcgcgaggttcttct 135394
>dbj|AK153993.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430019M10 product:ligase I, DNA, ATP-dependent, full insert sequence Length = 3051 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 ttgctctgttcctcttcctg 292 |||||||||||||||||||| Sbjct: 806 ttgctctgttcctcttcctg 787
>dbj|AK168643.1| Mus musculus 13 days embryo liver cDNA, RIKEN full-length enriched library, clone:I920040N07 product:ligase I, DNA, ATP-dependent, full insert sequence Length = 3169 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 ttgctctgttcctcttcctg 292 |||||||||||||||||||| Sbjct: 921 ttgctctgttcctcttcctg 902
>ref|XM_681657.1| PREDICTED: Danio rerio similar to plectin 1 isoform 11 (LOC558445), mRNA Length = 1224 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 489 tcctcatcttcgcggagcgcaggt 512 |||||||||||| ||||||||||| Sbjct: 959 tcctcatcttcgaggagcgcaggt 982
>gb|AC093045.1| Drosophila melanogaster, chromosome 2L, region 29E-29E, BAC clone BACR01O16, complete sequence Length = 189904 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 acaacatgacgctgctcaac 379 |||||||||||||||||||| Sbjct: 90270 acaacatgacgctgctcaac 90251
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.9 Identities = 38/44 (86%) Strand = Plus / Plus Query: 283 cctcttcctgtcgccggtggtcaccttctggaggatcatcaaga 326 ||||||||| ||||||||| || |||||| |||||||||||| Sbjct: 3976218 cctcttcctctcgccggtgcccattttctggcggatcatcaaga 3976261
>gb|AC079611.6| Homo sapiens BAC clone RP11-260J21 from 2, complete sequence Length = 180783 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 cctccccctctccccccaca 199 |||||||||||||||||||| Sbjct: 129352 cctccccctctccccccaca 129333
>gb|AE003622.4| Drosophila melanogaster chromosome 2L, section 31 of 83 of the complete sequence Length = 262557 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 acaacatgacgctgctcaac 379 |||||||||||||||||||| Sbjct: 179865 acaacatgacgctgctcaac 179846
>emb|BX572098.1| Prochlorococcus marinus MIT9313 complete genome; segment 4/7 Length = 346683 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 ctgctcaactgcctcctatc 390 |||||||||||||||||||| Sbjct: 151784 ctgctcaactgcctcctatc 151765
>emb|AM234062.1| Fusarium oxysporum f. sp. lycopersici ARA1 gene for putative arabinanase, exons 1-2 Length = 1306 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 tggtcaccttctggaggatc 319 |||||||||||||||||||| Sbjct: 983 tggtcaccttctggaggatc 1002
>gb|AC005416.1|AC005416 Drosophila melanogaster DNA sequence (P1 DS00901 (D289)), complete sequence Length = 57336 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 acaacatgacgctgctcaac 379 |||||||||||||||||||| Sbjct: 17514 acaacatgacgctgctcaac 17533
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.9 Identities = 38/44 (86%) Strand = Plus / Plus Query: 283 cctcttcctgtcgccggtggtcaccttctggaggatcatcaaga 326 ||||||||| ||||||||| || |||||| |||||||||||| Sbjct: 3976194 cctcttcctctcgccggtgcccattttctggcggatcatcaaga 3976237
>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132682 Score = 40.1 bits (20), Expect = 6.9 Identities = 38/44 (86%) Strand = Plus / Plus Query: 283 cctcttcctgtcgccggtggtcaccttctggaggatcatcaaga 326 ||||||||| ||||||||| || |||||| |||||||||||| Sbjct: 12628 cctcttcctctcgccggtgcccattttctggcggatcatcaaga 12671
>emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152090 Score = 40.1 bits (20), Expect = 6.9 Identities = 38/44 (86%) Strand = Plus / Plus Query: 283 cctcttcctgtcgccggtggtcaccttctggaggatcatcaaga 326 ||||||||| ||||||||| || |||||| |||||||||||| Sbjct: 138194 cctcttcctctcgccggtgcccattttctggcggatcatcaaga 138237
>gb|U19604.1|MMU19604 Mus musculus DNA ligase I mRNA, complete cds Length = 3172 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 ttgctctgttcctcttcctg 292 |||||||||||||||||||| Sbjct: 957 ttgctctgttcctcttcctg 938
>gb|U04674.1|MMU04674 Mus musculus DNA ligase I mRNA, complete cds Length = 2961 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 ttgctctgttcctcttcctg 292 |||||||||||||||||||| Sbjct: 712 ttgctctgttcctcttcctg 693 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,851,032 Number of Sequences: 3902068 Number of extensions: 2851032 Number of successful extensions: 66335 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66112 Number of HSP's gapped (non-prelim): 223 length of query: 513 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 490 effective length of database: 17,143,297,704 effective search space: 8400215874960 effective search space used: 8400215874960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)