ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2g03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106071.1| Zea mays PCO141993 mRNA sequence 381 e-102
2ref|NM_190168.1| Oryza sativa (japonica cultivar-group), predic... 347 2e-92
3dbj|AK067960.1| Oryza sativa (japonica cultivar-group) cDNA clon... 347 2e-92
4dbj|AK099531.1| Oryza sativa (japonica cultivar-group) cDNA clon... 339 5e-90
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 186 5e-44
6dbj|AP003227.3| Oryza sativa (japonica cultivar-group) genomic D... 186 5e-44
7dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic D... 186 5e-44
8dbj|AK063475.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 7e-37
9gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome... 100 9e-18
10dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 100 9e-18
11dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
12dbj|AP005589.2| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
13dbj|AP006441.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
14gb|AC153383.1| Mus musculus 6 BAC RP23-168L2 (Roswell Park Cance... 44 0.44
15gb|AC167724.6| Mus musculus 10 BAC RP23-331P17 (Roswell Park Can... 44 0.44
16dbj|AK063011.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.44
17gb|AC008369.1|AC008369 Drosophila melanogaster, chromosome 2R, r... 44 0.44
18gb|AE003810.3| Drosophila melanogaster chromosome 2R, section 40... 44 0.44
19dbj|AB225267.1| Aspergillus oryzae cDNA, contig sequence: AoEST2119 42 1.8
20dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 42 1.8
21gb|AC161792.9| Mus musculus chromosome 7, clone RP23-288B12, com... 40 6.9
22gb|AF289095.1| Clupea harengus microsatellite Cha1020 sequence 40 6.9
23gb|AY738132.1| Tegenaria saeva empty spiracles protein mRNA, par... 40 6.9
24ref|NM_010715.1| Mus musculus ligase I, DNA, ATP-dependent (Lig1... 40 6.9
25gb|BC028287.1| Mus musculus ligase I, DNA, ATP-dependent, mRNA (... 40 6.9
26gb|AC122168.14| Medicago truncatula clone mth2-4o4, complete seq... 40 6.9
27emb|AL158819.14| Human DNA sequence from clone RP11-382F24 on ch... 40 6.9
28gb|AC113615.3| Homo sapiens BAC clone RP11-586D19 from 4, comple... 40 6.9
29emb|CR392365.8| Zebrafish DNA sequence from clone DKEY-171P17 in... 40 6.9
30dbj|AK153993.1| Mus musculus 2 days neonate thymus thymic cells ... 40 6.9
31dbj|AK168643.1| Mus musculus 13 days embryo liver cDNA, RIKEN fu... 40 6.9
32ref|XM_681657.1| PREDICTED: Danio rerio similar to plectin 1 iso... 40 6.9
33gb|AC093045.1| Drosophila melanogaster, chromosome 2L, region 29... 40 6.9
34dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
35gb|AC079611.6| Homo sapiens BAC clone RP11-260J21 from 2, comple... 40 6.9
36gb|AE003622.4| Drosophila melanogaster chromosome 2L, section 31... 40 6.9
37emb|BX572098.1| Prochlorococcus marinus MIT9313 complete genome;... 40 6.9
38emb|AM234062.1| Fusarium oxysporum f. sp. lycopersici ARA1 gene ... 40 6.9
39gb|AC005416.1|AC005416 Drosophila melanogaster DNA sequence (P1 ... 40 6.9
40gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9
41emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb... 40 6.9
42emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa... 40 6.9
43gb|U19604.1|MMU19604 Mus musculus DNA ligase I mRNA, complete cds 40 6.9
44gb|U04674.1|MMU04674 Mus musculus DNA ligase I mRNA, complete cds 40 6.9 
>gb|AY106071.1| Zea mays PCO141993 mRNA sequence
          Length = 1300

 Score =  381 bits (192), Expect = e-102
 Identities = 258/280 (92%)
 Strand = Plus / Plus

                                                                       
Query: 224 gagatggagcatatcgcgaggttcttcttcggggtctctggcaatgttattgctctgttc 283
           ||||||||||||||||| |||||||||||||| || ||||| ||||| ||||| || |||
Sbjct: 239 gagatggagcatatcgccaggttcttcttcggagtttctgggaatgtcattgcgctcttc 298

                                                                       
Query: 284 ctcttcctgtcgccggtggtcaccttctggaggatcatcaagaggaagtcgacggaggac 343
           |||||||||||||| || ||||||||||||||| |||||| || |  |||||||||||||
Sbjct: 299 ctcttcctgtcgcctgttgtcaccttctggagggtcatcaggaagcggtcgacggaggac 358

                                                                       
Query: 344 ttctccggcgtgccatacaacatgacgctgctcaactgcctcctatccgcatggtacggg 403
           |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| 
Sbjct: 359 ttctccggcgtgccctacaacatgacgctgctcaactgcctcctatcggcttggtacggc 418

                                                                       
Query: 404 ttgccgttcgtgtccccgaacaacatcctggtgacgacgatcaacggcgcggggtcggtg 463
            |||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||
Sbjct: 419 ctgccgttcgtgtccccgaacaacatcctggtgtcgacgatcaacgggacggggtcggtg 478

                                                   
Query: 464 atcgaggccatctacgtggtgatcttcctcatcttcgcgg 503
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 atcgaggccatctacgtggtgatcttcctcatcttcgcgg 518
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>ref|NM_190168.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 822

 Score =  347 bits (175), Expect = 2e-92
 Identities = 253/279 (90%)
 Strand = Plus / Plus

                                                                       
Query: 227 atggagcatatcgcgaggttcttcttcggggtctctggcaatgttattgctctgttcctc 286
           |||||||| ||||||||||||||||| || || || |||||||| || ||||| ||||| 
Sbjct: 1   atggagcacatcgcgaggttcttctttggagtttccggcaatgtcatcgctctcttcctg 60

                                                                       
Query: 287 ttcctgtcgccggtggtcaccttctggaggatcatcaagaggaagtcgacggaggacttc 346
           ||||| ||||| || ||||||||||||||||||||||||| ||  || ||||||||||||
Sbjct: 61  ttcctttcgccagttgtcaccttctggaggatcatcaagaagagatcaacggaggacttc 120

                                                                       
Query: 347 tccggcgtgccatacaacatgacgctgctcaactgcctcctatccgcatggtacgggttg 406
           ||||||||||| ||||||||||| || ||||||||||| ||||| || ||||||||| ||
Sbjct: 121 tccggcgtgccttacaacatgacacttctcaactgcctgctatctgcttggtacgggctg 180

                                                                       
Query: 407 ccgttcgtgtccccgaacaacatcctggtgacgacgatcaacggcgcggggtcggtgatc 466
           ||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 181 ccgttcgtgtcaccgaacaacatcctggtgacgacgatcaacgggacggggtcggtgatc 240

                                                  
Query: 467 gaggccatctacgtggtgatcttcctcatcttcgcggag 505
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaggccatctacgtggtgatcttcctcatcttcgcggag 279
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>dbj|AK067960.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123F10, full
           insert sequence
          Length = 1208

 Score =  347 bits (175), Expect = 2e-92
 Identities = 253/279 (90%)
 Strand = Plus / Plus

                                                                       
Query: 227 atggagcatatcgcgaggttcttcttcggggtctctggcaatgttattgctctgttcctc 286
           |||||||| ||||||||||||||||| || || || |||||||| || ||||| ||||| 
Sbjct: 153 atggagcacatcgcgaggttcttctttggagtttccggcaatgtcatcgctctcttcctg 212

                                                                       
Query: 287 ttcctgtcgccggtggtcaccttctggaggatcatcaagaggaagtcgacggaggacttc 346
           ||||| ||||| || ||||||||||||||||||||||||| ||  || ||||||||||||
Sbjct: 213 ttcctttcgccagttgtcaccttctggaggatcatcaagaagagatcaacggaggacttc 272

                                                                       
Query: 347 tccggcgtgccatacaacatgacgctgctcaactgcctcctatccgcatggtacgggttg 406
           ||||||||||| ||||||||||| || ||||||||||| ||||| || ||||||||| ||
Sbjct: 273 tccggcgtgccttacaacatgacacttctcaactgcctgctatctgcttggtacgggctg 332

                                                                       
Query: 407 ccgttcgtgtccccgaacaacatcctggtgacgacgatcaacggcgcggggtcggtgatc 466
           ||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 333 ccgttcgtgtcaccgaacaacatcctggtgacgacgatcaacgggacggggtcggtgatc 392

                                                  
Query: 467 gaggccatctacgtggtgatcttcctcatcttcgcggag 505
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gaggccatctacgtggtgatcttcctcatcttcgcggag 431
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>dbj|AK099531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031J21, full
           insert sequence
          Length = 1161

 Score =  339 bits (171), Expect = 5e-90
 Identities = 252/279 (90%)
 Strand = Plus / Plus

                                                                       
Query: 227 atggagcatatcgcgaggttcttcttcggggtctctggcaatgttattgctctgttcctc 286
           |||||||| ||||||||||||||||| || || || |||||||| || ||||| ||||| 
Sbjct: 145 atggagcacatcgcgaggttcttctttggagtttccggcaatgtcatcgctctcttcctg 204

                                                                       
Query: 287 ttcctgtcgccggtggtcaccttctggaggatcatcaagaggaagtcgacggaggacttc 346
           ||||| ||||| || ||||||||||||||||||||||||| ||  || ||||||||||||
Sbjct: 205 ttcctttcgccagttgtcaccttctggaggatcatcaagaagagatcaacggaggacttc 264

                                                                       
Query: 347 tccggcgtgccatacaacatgacgctgctcaactgcctcctatccgcatggtacgggttg 406
           ||||||||||| ||||||||||| || ||||||||||| ||||| || ||||||||| ||
Sbjct: 265 tccggcgtgccttacaacatgacacttctcaactgcctgctatctgcttggtacgggctg 324

                                                                       
Query: 407 ccgttcgtgtccccgaacaacatcctggtgacgacgatcaacggcgcggggtcggtgatc 466
           ||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 325 ccgttcgtgtcaccgaacaacatcctggtgacgacgatcaacgggacggggtcggtgatc 384

                                                  
Query: 467 gaggccatctacgtggtgatcttcctcatcttcgcggag 505
           |||||||||||||||||||| ||||||||||||||||||
Sbjct: 385 gaggccatctacgtggtgatgttcctcatcttcgcggag 423
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  186 bits (94), Expect = 5e-44
 Identities = 106/110 (96%)
 Strand = Plus / Plus

                                                                            
Query: 396      ggtacgggttgccgttcgtgtccccgaacaacatcctggtgacgacgatcaacggcgcgg 455
                |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||  |||
Sbjct: 38249172 ggtacgggctgccgttcgtgtcaccgaacaacatcctggtgacgacgatcaacgggacgg 38249231

                                                                  
Query: 456      ggtcggtgatcgaggccatctacgtggtgatcttcctcatcttcgcggag 505
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38249232 ggtcggtgatcgaggccatctacgtggtgatcttcctcatcttcgcggag 38249281



 Score =  115 bits (58), Expect = 1e-22
 Identities = 88/98 (89%)
 Strand = Plus / Plus

                                                                            
Query: 302      gtcaccttctggaggatcatcaagaggaagtcgacggaggacttctccggcgtgccatac 361
                ||||||||||||||||||||||||| ||  || ||||||||||||||||||||||| |||
Sbjct: 38248182 gtcaccttctggaggatcatcaagaagagatcaacggaggacttctccggcgtgccttac 38248241

                                                      
Query: 362      aacatgacgctgctcaactgcctcctatccgcatggta 399
                |||||||| || ||||||||||| ||||| || |||||
Sbjct: 38248242 aacatgacacttctcaactgcctgctatctgcttggta 38248279



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 227      atggagcatatcgcgaggttcttctt 252
                |||||||| |||||||||||||||||
Sbjct: 38247463 atggagcacatcgcgaggttcttctt 38247488
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>dbj|AP003227.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0018C10
          Length = 200183

 Score =  186 bits (94), Expect = 5e-44
 Identities = 106/110 (96%)
 Strand = Plus / Plus

                                                                          
Query: 396    ggtacgggttgccgttcgtgtccccgaacaacatcctggtgacgacgatcaacggcgcgg 455
              |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||  |||
Sbjct: 168406 ggtacgggctgccgttcgtgtcaccgaacaacatcctggtgacgacgatcaacgggacgg 168465

                                                                
Query: 456    ggtcggtgatcgaggccatctacgtggtgatcttcctcatcttcgcggag 505
              ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168466 ggtcggtgatcgaggccatctacgtggtgatcttcctcatcttcgcggag 168515



 Score =  115 bits (58), Expect = 1e-22
 Identities = 88/98 (89%)
 Strand = Plus / Plus

                                                                          
Query: 302    gtcaccttctggaggatcatcaagaggaagtcgacggaggacttctccggcgtgccatac 361
              ||||||||||||||||||||||||| ||  || ||||||||||||||||||||||| |||
Sbjct: 167416 gtcaccttctggaggatcatcaagaagagatcaacggaggacttctccggcgtgccttac 167475

                                                    
Query: 362    aacatgacgctgctcaactgcctcctatccgcatggta 399
              |||||||| || ||||||||||| ||||| || |||||
Sbjct: 167476 aacatgacacttctcaactgcctgctatctgcttggta 167513



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 227    atggagcatatcgcgaggttcttctt 252
              |||||||| |||||||||||||||||
Sbjct: 166697 atggagcacatcgcgaggttcttctt 166722
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>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1065E10
          Length = 183580

 Score =  186 bits (94), Expect = 5e-44
 Identities = 106/110 (96%)
 Strand = Plus / Plus

                                                                         
Query: 396   ggtacgggttgccgttcgtgtccccgaacaacatcctggtgacgacgatcaacggcgcgg 455
             |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||  |||
Sbjct: 9997  ggtacgggctgccgttcgtgtcaccgaacaacatcctggtgacgacgatcaacgggacgg 10056

                                                               
Query: 456   ggtcggtgatcgaggccatctacgtggtgatcttcctcatcttcgcggag 505
             ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10057 ggtcggtgatcgaggccatctacgtggtgatcttcctcatcttcgcggag 10106



 Score =  115 bits (58), Expect = 1e-22
 Identities = 88/98 (89%)
 Strand = Plus / Plus

                                                                        
Query: 302  gtcaccttctggaggatcatcaagaggaagtcgacggaggacttctccggcgtgccatac 361
            ||||||||||||||||||||||||| ||  || ||||||||||||||||||||||| |||
Sbjct: 9007 gtcaccttctggaggatcatcaagaagagatcaacggaggacttctccggcgtgccttac 9066

                                                  
Query: 362  aacatgacgctgctcaactgcctcctatccgcatggta 399
            |||||||| || ||||||||||| ||||| || |||||
Sbjct: 9067 aacatgacacttctcaactgcctgctatctgcttggta 9104



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 227  atggagcatatcgcgaggttcttctt 252
            |||||||| |||||||||||||||||
Sbjct: 8288 atggagcacatcgcgaggttcttctt 8313
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>dbj|AK063475.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-B01, full
           insert sequence
          Length = 1211

 Score =  163 bits (82), Expect = 7e-37
 Identities = 178/210 (84%)
 Strand = Plus / Plus

                                                                       
Query: 260 tctggcaatgttattgctctgttcctcttcctgtcgccggtggtcaccttctggaggatc 319
           ||||||||||| || || || ||||||||| | || || |||   || ||||||||||||
Sbjct: 258 tctggcaatgtcatcgcgctcttcctcttcttatccccagtgcctactttctggaggatc 317

                                                                       
Query: 320 atcaagaggaagtcgacggaggacttctccggcgtgccatacaacatgacgctgctcaac 379
           ||   |||||| || || ||||| ||||| || ||||||||||||||||| ||  |||||
Sbjct: 318 attcggaggaaatcaacagaggatttctctggggtgccatacaacatgacactcatcaac 377

                                                                       
Query: 380 tgcctcctatccgcatggtacgggttgccgttcgtgtccccgaacaacatcctggtgacg 439
           |||||||| || |||||||||||| |||||||||||||||| ||||||||||||||| ||
Sbjct: 378 tgcctcctctctgcatggtacgggctgccgttcgtgtccccaaacaacatcctggtgtcg 437

                                         
Query: 440 acgatcaacggcgcggggtcggtgatcgag 469
           |||||||||||||| ||  |||||||||||
Sbjct: 438 acgatcaacggcgccggcgcggtgatcgag 467
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>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0044P19, complete sequence
          Length = 176917

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 68/74 (91%)
 Strand = Plus / Plus

                                                                         
Query: 396   ggtacgggttgccgttcgtgtccccgaacaacatcctggtgacgacgatcaacggcgcgg 455
             |||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||| |
Sbjct: 41566 ggtacgggctgccgttcgtgtccccaaacaacatcctggtgtcgacgatcaacggcgccg 41625

                           
Query: 456   ggtcggtgatcgag 469
             |  |||||||||||
Sbjct: 41626 gcgcggtgatcgag 41639



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 78/92 (84%)
 Strand = Plus / Plus

                                                                         
Query: 308   ttctggaggatcatcaagaggaagtcgacggaggacttctccggcgtgccatacaacatg 367
             ||||||||||||||   |||||| || || ||||| ||||| || |||||||||||||||
Sbjct: 40184 ttctggaggatcattcggaggaaatcaacagaggatttctctggggtgccatacaacatg 40243

                                             
Query: 368   acgctgctcaactgcctcctatccgcatggta 399
             || ||  ||||||||||||| || ||||||||
Sbjct: 40244 acactcatcaactgcctcctctctgcatggta 40275
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 68/74 (91%)
 Strand = Plus / Plus

                                                                            
Query: 396      ggtacgggttgccgttcgtgtccccgaacaacatcctggtgacgacgatcaacggcgcgg 455
                |||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||| |
Sbjct: 20728342 ggtacgggctgccgttcgtgtccccaaacaacatcctggtgtcgacgatcaacggcgccg 20728401

                              
Query: 456      ggtcggtgatcgag 469
                |  |||||||||||
Sbjct: 20728402 gcgcggtgatcgag 20728415



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 78/92 (84%)
 Strand = Plus / Plus

                                                                            
Query: 308      ttctggaggatcatcaagaggaagtcgacggaggacttctccggcgtgccatacaacatg 367
                ||||||||||||||   |||||| || || ||||| ||||| || |||||||||||||||
Sbjct: 20726960 ttctggaggatcattcggaggaaatcaacagaggatttctctggggtgccatacaacatg 20727019

                                                
Query: 368      acgctgctcaactgcctcctatccgcatggta 399
                || ||  ||||||||||||| || ||||||||
Sbjct: 20727020 acactcatcaactgcctcctctctgcatggta 20727051
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                          
Query: 283     cctcttcctgtcgccggtggtcaccttctggaggatcatcaag 325
               ||||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 4222169 cctcttcctctcgccggtgctcaccttctggcggatcatcaag 4222127



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                           
Query: 283     cctcttcctgtcgccggtggtcaccttctggaggatcatcaaga 326
               ||||||||| |||||||||  |||||||||| ||||||||||||
Sbjct: 4375143 cctcttcctctcgccggtgcccaccttctggcggatcatcaaga 4375186



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                           
Query: 283     cctcttcctgtcgccggtggtcaccttctggaggatcatcaaga 326
               ||||||||| |||||||||  ||||||||   ||||||||||||
Sbjct: 4347086 cctcttcctctcgccggtgcccaccttctaccggatcatcaaga 4347129
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>dbj|AP005589.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0523B07
          Length = 170510

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                        
Query: 283   cctcttcctgtcgccggtggtcaccttctggaggatcatcaag 325
             ||||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 45928 cctcttcctctcgccggtgctcaccttctggcggatcatcaag 45886
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>dbj|AP006441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1279D09
          Length = 134793

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                         
Query: 283   cctcttcctgtcgccggtggtcaccttctggaggatcatcaaga 326
             ||||||||| |||||||||  |||||||||| ||||||||||||
Sbjct: 77961 cctcttcctctcgccggtgcccaccttctggcggatcatcaaga 78004



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                         
Query: 283   cctcttcctgtcgccggtggtcaccttctggaggatcatcaaga 326
             ||||||||| |||||||||  ||||||||   ||||||||||||
Sbjct: 49904 cctcttcctctcgccggtgcccaccttctaccggatcatcaaga 49947
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>gb|AC153383.1| Mus musculus 6 BAC RP23-168L2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 197962

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 177   agacctccccctctccccccac 198
             ||||||||||||||||||||||
Sbjct: 65488 agacctccccctctccccccac 65467
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>gb|AC167724.6| Mus musculus 10 BAC RP23-331P17 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 230186

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 177   agacctccccctctccccccac 198
             ||||||||||||||||||||||
Sbjct: 84112 agacctccccctctccccccac 84133
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>dbj|AK063011.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-A05, full
           insert sequence
          Length = 595

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 227 atggagcatatcgcgaggttcttctt 252
           |||||||| |||||||||||||||||
Sbjct: 152 atggagcacatcgcgaggttcttctt 177
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>gb|AC008369.1|AC008369 Drosophila melanogaster, chromosome 2R, region 52A4-52B4, P1 clones
              BACR48C01 and DS08592, complete sequence
          Length = 192366

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 180    cctccccctctccccccacacc 201
              ||||||||||||||||||||||
Sbjct: 111984 cctccccctctccccccacacc 112005
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>gb|AE003810.3| Drosophila melanogaster chromosome 2R, section 40 of 73 of the complete
              sequence
          Length = 271178

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 180    cctccccctctccccccacacc 201
              ||||||||||||||||||||||
Sbjct: 189342 cctccccctctccccccacacc 189363
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>dbj|AB225267.1| Aspergillus oryzae cDNA, contig sequence: AoEST2119
          Length = 474

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 438 cgacgatcaacggcgcggggt 458
           |||||||||||||||||||||
Sbjct: 62  cgacgatcaacggcgcggggt 42
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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 438    cgacgatcaacggcgcggggt 458
              |||||||||||||||||||||
Sbjct: 349623 cgacgatcaacggcgcggggt 349603
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>gb|AC161792.9| Mus musculus chromosome 7, clone RP23-288B12, complete sequence
          Length = 166375

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 273   ttgctctgttcctcttcctg 292
             ||||||||||||||||||||
Sbjct: 93028 ttgctctgttcctcttcctg 93009
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>gb|AF289095.1| Clupea harengus microsatellite Cha1020 sequence
          Length = 250

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 269 gttattgctctgttcctctt 288
           ||||||||||||||||||||
Sbjct: 156 gttattgctctgttcctctt 137
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>gb|AY738132.1| Tegenaria saeva empty spiracles protein mRNA, partial cds
          Length = 685

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 tgctctgttcctcttcctgt 293
           ||||||||||||||||||||
Sbjct: 181 tgctctgttcctcttcctgt 162
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>ref|NM_010715.1| Mus musculus ligase I, DNA, ATP-dependent (Lig1), mRNA
          Length = 3172

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 273 ttgctctgttcctcttcctg 292
           ||||||||||||||||||||
Sbjct: 957 ttgctctgttcctcttcctg 938
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>gb|BC028287.1| Mus musculus ligase I, DNA, ATP-dependent, mRNA (cDNA clone
           MGC:25340 IMAGE:4911261), complete cds
          Length = 3050

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 273 ttgctctgttcctcttcctg 292
           ||||||||||||||||||||
Sbjct: 769 ttgctctgttcctcttcctg 750
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>gb|AC122168.14| Medicago truncatula clone mth2-4o4, complete sequence
          Length = 120886

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    ttcttcttcggggtctctgg 264
              ||||||||||||||||||||
Sbjct: 105098 ttcttcttcggggtctctgg 105079
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>emb|AL158819.14| Human DNA sequence from clone RP11-382F24 on chromosome X Contains a NADH
              dehydrogenase 2 (MTND2) pseudogene, a NADH dehydrogenase 1
              (MTND1) pseudogene, the gene for PAGE-5 protein (PAGE-5)
              and two novel genes, complete sequence
          Length = 174913

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 180    cctccccctctccccccacaccgt 203
              |||||||||||||||| |||||||
Sbjct: 163682 cctccccctctccccctacaccgt 163705
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>gb|AC113615.3| Homo sapiens BAC clone RP11-586D19 from 4, complete sequence
          Length = 164043

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  ctggaggatcatcaagagga 329
            ||||||||||||||||||||
Sbjct: 4842 ctggaggatcatcaagagga 4823
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>emb|CR392365.8| Zebrafish DNA sequence from clone DKEY-171P17 in linkage group 5,
              complete sequence
          Length = 168716

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 228    tggagcatatcgcgaggttcttct 251
              |||||||| |||||||||||||||
Sbjct: 135371 tggagcatctcgcgaggttcttct 135394
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>dbj|AK153993.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430019M10
           product:ligase I, DNA, ATP-dependent, full insert
           sequence
          Length = 3051

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 273 ttgctctgttcctcttcctg 292
           ||||||||||||||||||||
Sbjct: 806 ttgctctgttcctcttcctg 787
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>dbj|AK168643.1| Mus musculus 13 days embryo liver cDNA, RIKEN full-length enriched
           library, clone:I920040N07 product:ligase I, DNA,
           ATP-dependent, full insert sequence
          Length = 3169

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 273 ttgctctgttcctcttcctg 292
           ||||||||||||||||||||
Sbjct: 921 ttgctctgttcctcttcctg 902
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>ref|XM_681657.1| PREDICTED: Danio rerio similar to plectin 1 isoform 11 (LOC558445),
           mRNA
          Length = 1224

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 489 tcctcatcttcgcggagcgcaggt 512
           |||||||||||| |||||||||||
Sbjct: 959 tcctcatcttcgaggagcgcaggt 982
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>gb|AC093045.1| Drosophila melanogaster, chromosome 2L, region 29E-29E, BAC clone
             BACR01O16, complete sequence
          Length = 189904

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 360   acaacatgacgctgctcaac 379
             ||||||||||||||||||||
Sbjct: 90270 acaacatgacgctgctcaac 90251
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                           
Query: 283     cctcttcctgtcgccggtggtcaccttctggaggatcatcaaga 326
               ||||||||| |||||||||  ||  |||||| ||||||||||||
Sbjct: 3976218 cctcttcctctcgccggtgcccattttctggcggatcatcaaga 3976261
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>gb|AC079611.6| Homo sapiens BAC clone RP11-260J21 from 2, complete sequence
          Length = 180783

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 180    cctccccctctccccccaca 199
              ||||||||||||||||||||
Sbjct: 129352 cctccccctctccccccaca 129333
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>gb|AE003622.4| Drosophila melanogaster chromosome 2L, section 31 of 83 of the complete
              sequence
          Length = 262557

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 360    acaacatgacgctgctcaac 379
              ||||||||||||||||||||
Sbjct: 179865 acaacatgacgctgctcaac 179846
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>emb|BX572098.1| Prochlorococcus marinus MIT9313 complete genome; segment 4/7
          Length = 346683

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 371    ctgctcaactgcctcctatc 390
              ||||||||||||||||||||
Sbjct: 151784 ctgctcaactgcctcctatc 151765
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>emb|AM234062.1| Fusarium oxysporum f. sp. lycopersici ARA1 gene for putative
            arabinanase, exons 1-2
          Length = 1306

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 300  tggtcaccttctggaggatc 319
            ||||||||||||||||||||
Sbjct: 983  tggtcaccttctggaggatc 1002
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>gb|AC005416.1|AC005416 Drosophila melanogaster DNA sequence (P1 DS00901 (D289)), complete
             sequence
          Length = 57336

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 360   acaacatgacgctgctcaac 379
             ||||||||||||||||||||
Sbjct: 17514 acaacatgacgctgctcaac 17533
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                           
Query: 283     cctcttcctgtcgccggtggtcaccttctggaggatcatcaaga 326
               ||||||||| |||||||||  ||  |||||| ||||||||||||
Sbjct: 3976194 cctcttcctctcgccggtgcccattttctggcggatcatcaaga 3976237
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>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132682

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                         
Query: 283   cctcttcctgtcgccggtggtcaccttctggaggatcatcaaga 326
             ||||||||| |||||||||  ||  |||||| ||||||||||||
Sbjct: 12628 cctcttcctctcgccggtgcccattttctggcggatcatcaaga 12671
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>emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 152090

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                          
Query: 283    cctcttcctgtcgccggtggtcaccttctggaggatcatcaaga 326
              ||||||||| |||||||||  ||  |||||| ||||||||||||
Sbjct: 138194 cctcttcctctcgccggtgcccattttctggcggatcatcaaga 138237
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>gb|U19604.1|MMU19604 Mus musculus DNA ligase I mRNA, complete cds
          Length = 3172

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 273 ttgctctgttcctcttcctg 292
           ||||||||||||||||||||
Sbjct: 957 ttgctctgttcctcttcctg 938
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>gb|U04674.1|MMU04674 Mus musculus DNA ligase I mRNA, complete cds
          Length = 2961

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 273 ttgctctgttcctcttcctg 292
           ||||||||||||||||||||
Sbjct: 712 ttgctctgttcctcttcctg 693


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,851,032
Number of Sequences: 3902068
Number of extensions: 2851032
Number of successful extensions: 66335
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66112
Number of HSP's gapped (non-prelim): 223
length of query: 513
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 490
effective length of database: 17,143,297,704
effective search space: 8400215874960
effective search space used: 8400215874960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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