ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC113320.7| Mus musculus chromosome 6, clone RP23-445E16, com... 44 0.27
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.27
3gb|AC106874.4| Homo sapiens BAC clone RP11-390E19 from 2, comple... 44 0.27
4dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.27
5emb|AL773507.7| Mouse DNA sequence from clone RP23-322E14 on chr... 42 1.0
6gb|AC009496.3| Homo sapiens BAC clone RP11-500G18 from 2, comple... 42 1.0
7emb|BX548066.3| Zebrafish DNA sequence from clone CH211-226F1 in... 42 1.0
8emb|X75939.1|ISMVCP Iris severe mosaic potyvirus gene for coat p... 42 1.0
9gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 4.1
10gb|AC159266.3| Mus musculus BAC clone RP24-64D24 from chromosome... 40 4.1
11gb|AC110880.10| Mus musculus chromosome 7, clone RP24-456G3, com... 40 4.1
12gb|BT014752.1| Arabidopsis thaliana At2g07681 mRNA, complete cds 40 4.1
13emb|CR356243.16| Zebrafish DNA sequence from clone CH211-209O4 i... 40 4.1
14gb|AC145941.2| Pan troglodytes BAC clone RP43-40O7 from 7, compl... 40 4.1
15gb|AC012061.4| Homo sapiens BAC clone CTD-2052D1 from 7, complet... 40 4.1
16gb|AC096035.6| Rattus norvegicus 4 BAC CH230-16M16 (Children's H... 40 4.1
17gb|AC099533.36| Pan troglodytes clone rp43-41g5, complete sequence 40 4.1
18emb|AL137067.7| Human DNA sequence from clone RP11-13B9 on chrom... 40 4.1
19ref|XM_791418.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 4.1
20ref|XM_789412.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 4.1
21gb|AC152411.5| Mus musculus BAC clone RP24-87M19 from chromosome... 40 4.1
22dbj|AK125841.1| Homo sapiens cDNA FLJ43853 fis, clone TESTI40068... 40 4.1
23gb|AC007730.3| Arabidopsis thaliana chromosome 2 BAC T5M2 genomi... 40 4.1
24gb|AC007143.5| Arabidopsis thaliana chromosome 2 BAC T17H1 genom... 40 4.1
25gb|AC019077.9| Homo sapiens BAC clone RP11-323J4 from 4, complet... 40 4.1
26emb|BX936429.8| Zebrafish DNA sequence from clone DKEY-224E22 in... 40 4.1
27gb|AC078961.23| Homo sapiens 4 BAC RP11-486H4 (Roswell Park Canc... 40 4.1
28gb|AC126267.3| Mus musculus BAC clone RP23-191M12 from chromosom... 40 4.1
29gb|AC147288.4| Pan troglodytes BAC clone RP43-74L22 from chromos... 40 4.1
30gb|AC007282.4| Homo sapiens BAC clone RP11-484N9 from 2, complet... 40 4.1
31ref|XM_231550.3| PREDICTED: Rattus norvegicus RNA binding motif ... 40 4.1
32emb|BX005079.6| Zebrafish DNA sequence from clone CH211-176D9, c... 40 4.1
33emb|BX248097.7| Zebrafish DNA sequence from clone CH211-232M8 in... 40 4.1
34gb|AC121887.4| Mus musculus BAC clone RP24-142B15 from 5, comple... 40 4.1
35emb|BX897712.12| Zebrafish DNA sequence from clone CH211-146A9 i... 40 4.1
36emb|Y08501.2|MIATGENA Arabidopsis thaliana mitochondrial genome 40 4.1
37emb|BX927414.24| Zebrafish DNA sequence from clone DKEYP-5A5 in ... 40 4.1
38emb|CR548631.18| Zebrafish DNA sequence from clone CH211-117I20 ... 40 4.1
39gb|AC156028.2| Mus musculus BAC clone RP23-61A11 from chromosome... 40 4.1
40emb|AL731767.18| Mouse DNA sequence from clone RP23-338L13 on ch... 40 4.1
41emb|AL691498.15| Mouse DNA sequence from clone RP23-16B21 on chr... 40 4.1 
>gb|AC113320.7| Mus musculus chromosome 6, clone RP23-445E16, complete sequence
          Length = 267708

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 53     tacataatatatttgtgtatat 74
              ||||||||||||||||||||||
Sbjct: 208918 tacataatatatttgtgtatat 208897
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 52       atacataatatatttgtgtatatgaa 77
                |||||||||||| |||||||||||||
Sbjct: 12053277 atacataatataattgtgtatatgaa 12053302
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>gb|AC106874.4| Homo sapiens BAC clone RP11-390E19 from 2, complete sequence
          Length = 121348

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 53     tacataatatatttgtgtatatgaac 78
              |||||||||||| |||||||||||||
Sbjct: 118125 tacataatatatatgtgtatatgaac 118100
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>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0441A12
          Length = 185437

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 52     atacataatatatttgtgtatatgaa 77
              |||||||||||| |||||||||||||
Sbjct: 157757 atacataatataattgtgtatatgaa 157782
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>emb|AL773507.7| Mouse DNA sequence from clone RP23-322E14 on chromosome 4 Contains a
             phospholipase A2, group XIIA (Pla2g12) pseudogene,
             complete sequence
          Length = 200646

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 50    acatacataatatatttgtgtatat 74
             |||||||||||||||| ||||||||
Sbjct: 95319 acatacataatatattcgtgtatat 95295
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>gb|AC009496.3| Homo sapiens BAC clone RP11-500G18 from 2, complete sequence
          Length = 96843

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 50    acatacataatatatttgtgtatat 74
             ||||||||||||||| |||||||||
Sbjct: 67778 acatacataatatatatgtgtatat 67802
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>emb|BX548066.3| Zebrafish DNA sequence from clone CH211-226F1 in linkage group 20,
             complete sequence
          Length = 185926

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 54    acataatatatttgtgtatat 74
             |||||||||||||||||||||
Sbjct: 91150 acataatatatttgtgtatat 91170
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>emb|X75939.1|ISMVCP Iris severe mosaic potyvirus gene for coat protein
          Length = 2510

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 48   aaacatacataatatatttgt 68
            |||||||||||||||||||||
Sbjct: 2218 aaacatacataatatatttgt 2198
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 269     cccctgctttgttcgatttggtag 292
               ||||||||||||||||| ||||||
Sbjct: 2657217 cccctgctttgttcgatgtggtag 2657240
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>gb|AC159266.3| Mus musculus BAC clone RP24-64D24 from chromosome 8, complete sequence
          Length = 212727

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   ctccccctcccctgctttgt 280
             ||||||||||||||||||||
Sbjct: 35884 ctccccctcccctgctttgt 35865
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>gb|AC110880.10| Mus musculus chromosome 7, clone RP24-456G3, complete sequence
          Length = 162685

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    acaaattcagaaatcaacac 115
             ||||||||||||||||||||
Sbjct: 72586 acaaattcagaaatcaacac 72567
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>gb|BT014752.1| Arabidopsis thaliana At2g07681 mRNA, complete cds
          Length = 1201

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 262 tccccctcccctgctttgtt 281
           ||||||||||||||||||||
Sbjct: 273 tccccctcccctgctttgtt 254
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>emb|CR356243.16| Zebrafish DNA sequence from clone CH211-209O4 in linkage group 6,
              complete sequence
          Length = 216472

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     cataatatatttgtgtatat 74
              ||||||||||||||||||||
Sbjct: 192509 cataatatatttgtgtatat 192528
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>gb|AC145941.2| Pan troglodytes BAC clone RP43-40O7 from 7, complete sequence
          Length = 172479

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    ataatatatttgtgtatatg 75
             ||||||||||||||||||||
Sbjct: 58097 ataatatatttgtgtatatg 58078
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>gb|AC012061.4| Homo sapiens BAC clone CTD-2052D1 from 7, complete sequence
          Length = 81670

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    ataatatatttgtgtatatg 75
             ||||||||||||||||||||
Sbjct: 72408 ataatatatttgtgtatatg 72389
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>gb|AC096035.6| Rattus norvegicus 4 BAC CH230-16M16 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 228433

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 51    catacataatatatttgtgtatat 74
             |||| |||||||||||||||||||
Sbjct: 71415 cataaataatatatttgtgtatat 71438
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>gb|AC099533.36| Pan troglodytes clone rp43-41g5, complete sequence
          Length = 226331

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 226  tgtatgtgttatattaccaa 245
            ||||||||||||||||||||
Sbjct: 1271 tgtatgtgttatattaccaa 1290
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>emb|AL137067.7| Human DNA sequence from clone RP11-13B9 on chromosome 9q22.32-31.3
             Contains a gene for a novel protein similar to a
             glycosyltransferase, the gene for protein translocation
             complex beta (SEC61B), a novel gene for a protein similar
             to cytokeratin 8 (KRT8)and a CpG island, complete sequence
          Length = 197169

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 52    atacataatatatttgtgtatatg 75
             ||||||||||||| ||||||||||
Sbjct: 11660 atacataatatatatgtgtatatg 11637
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>ref|XM_791418.1| PREDICTED: Strongylocentrotus purpuratus similar to Low-density
            lipoprotein receptor-related protein 2 precursor
            (Megalin) (Glycoprotein 330) (gp330) (LOC591871), mRNA
          Length = 4542

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 254  tgttttgctccccctcccct 273
            ||||||||||||||||||||
Sbjct: 4417 tgttttgctccccctcccct 4398
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>ref|XM_789412.1| PREDICTED: Strongylocentrotus purpuratus similar to low density
            lipoprotein receptor-related protein 2 (LOC589778), mRNA
          Length = 4548

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 254  tgttttgctccccctcccct 273
            ||||||||||||||||||||
Sbjct: 4519 tgttttgctccccctcccct 4500
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>gb|AC152411.5| Mus musculus BAC clone RP24-87M19 from chromosome 10, complete sequence
          Length = 204973

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     catacataatatatttgtgt 70
              ||||||||||||||||||||
Sbjct: 108497 catacataatatatttgtgt 108478
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>dbj|AK125841.1| Homo sapiens cDNA FLJ43853 fis, clone TESTI4006819, moderately
           similar to Alpha enolase (EC 4.2.1.11)
          Length = 4435

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 59  atatatttgtgtatatgaac 78
           ||||||||||||||||||||
Sbjct: 116 atatatttgtgtatatgaac 135
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>gb|AC007730.3| Arabidopsis thaliana chromosome 2 BAC T5M2 genomic sequence, complete
             sequence
          Length = 94302

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 262   tccccctcccctgctttgtt 281
             ||||||||||||||||||||
Sbjct: 67768 tccccctcccctgctttgtt 67749



 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 262   tccccctcccctgctttgtt 281
             ||||||||||||||||||||
Sbjct: 18135 tccccctcccctgctttgtt 18154
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>gb|AC007143.5| Arabidopsis thaliana chromosome 2 BAC T17H1 genomic sequence, complete
             sequence
          Length = 75812

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 262   tccccctcccctgctttgtt 281
             ||||||||||||||||||||
Sbjct: 33601 tccccctcccctgctttgtt 33582
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>gb|AC019077.9| Homo sapiens BAC clone RP11-323J4 from 4, complete sequence
          Length = 190437

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 205    cttttaatagtgtaaagagg 224
              ||||||||||||||||||||
Sbjct: 182047 cttttaatagtgtaaagagg 182066
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>emb|BX936429.8| Zebrafish DNA sequence from clone DKEY-224E22 in linkage group 18,
             complete sequence
          Length = 158832

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    gaacttgtacttaggtacaa 99
             ||||||||||||||||||||
Sbjct: 28920 gaacttgtacttaggtacaa 28901
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>gb|AC078961.23| Homo sapiens 4 BAC RP11-486H4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 179762

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   cttttaatagtgtaaagagg 224
             ||||||||||||||||||||
Sbjct: 42076 cttttaatagtgtaaagagg 42057
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>gb|AC126267.3| Mus musculus BAC clone RP23-191M12 from chromosome 9, complete sequence
          Length = 218974

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 41    catgcacaaacatacataatatat 64
             |||||||| |||||||||||||||
Sbjct: 94580 catgcacacacatacataatatat 94603
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>gb|AC147288.4| Pan troglodytes BAC clone RP43-74L22 from chromosome 7, complete
             sequence
          Length = 140079

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    ataatatatttgtgtatatg 75
             ||||||||||||||||||||
Sbjct: 57994 ataatatatttgtgtatatg 57975
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>gb|AC007282.4| Homo sapiens BAC clone RP11-484N9 from 2, complete sequence
          Length = 182632

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 59   atatatttgtgtatatgaac 78
            ||||||||||||||||||||
Sbjct: 1303 atatatttgtgtatatgaac 1322
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>ref|XM_231550.3| PREDICTED: Rattus norvegicus RNA binding motif protein 28 (predicted)
            (Rbm28_predicted), mRNA
          Length = 2984

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 51   catacataatatatttgtgtatat 74
            |||| |||||||||||||||||||
Sbjct: 2626 cataaataatatatttgtgtatat 2603
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>emb|BX005079.6| Zebrafish DNA sequence from clone CH211-176D9, complete sequence
          Length = 157845

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     acaaacatacataatatatt 65
              ||||||||||||||||||||
Sbjct: 107869 acaaacatacataatatatt 107888
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>emb|BX248097.7| Zebrafish DNA sequence from clone CH211-232M8 in linkage group 14,
             complete sequence
          Length = 171333

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 52    atacataatatatttgtgtatatg 75
             ||||||||||||| ||||||||||
Sbjct: 48464 atacataatatatatgtgtatatg 48441
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>gb|AC121887.4| Mus musculus BAC clone RP24-142B15 from 5, complete sequence
          Length = 234919

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 75    gaactgaacttgtacttaggtaca 98
             |||||||| |||||||||||||||
Sbjct: 60019 gaactgaatttgtacttaggtaca 59996
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>emb|BX897712.12| Zebrafish DNA sequence from clone CH211-146A9 in linkage group 4,
             complete sequence
          Length = 119220

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    tacataatatatttgtgtat 72
             ||||||||||||||||||||
Sbjct: 85033 tacataatatatttgtgtat 85014
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>emb|Y08501.2|MIATGENA Arabidopsis thaliana mitochondrial genome
          Length = 366924

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 262    tccccctcccctgctttgtt 281
              ||||||||||||||||||||
Sbjct: 240841 tccccctcccctgctttgtt 240860
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>emb|BX927414.24| Zebrafish DNA sequence from clone DKEYP-5A5 in linkage group 10, complete
              sequence
          Length = 126112

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 42     atgcacaaacatacataatatatt 65
              ||||||| ||||||||||||||||
Sbjct: 111761 atgcacacacatacataatatatt 111738
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>emb|CR548631.18| Zebrafish DNA sequence from clone CH211-117I20 in linkage group 6,
             complete sequence
          Length = 169904

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    cataatatatttgtgtatat 74
             ||||||||||||||||||||
Sbjct: 31045 cataatatatttgtgtatat 31064
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>gb|AC156028.2| Mus musculus BAC clone RP23-61A11 from chromosome 8, complete sequence
          Length = 212724

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 261    ctccccctcccctgctttgt 280
              ||||||||||||||||||||
Sbjct: 210346 ctccccctcccctgctttgt 210327
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>emb|AL731767.18| Mouse DNA sequence from clone RP23-338L13 on chromosome 2, complete
             sequence
          Length = 135926

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    ataatatatttgtgtatatg 75
             ||||||||||||||||||||
Sbjct: 16794 ataatatatttgtgtatatg 16813
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>emb|AL691498.15| Mouse DNA sequence from clone RP23-16B21 on chromosome 2, complete
             sequence
          Length = 122757

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    aatatatttgtgtatatgaa 77
             ||||||||||||||||||||
Sbjct: 26156 aatatatttgtgtatatgaa 26175


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,401,448
Number of Sequences: 3902068
Number of extensions: 3401448
Number of successful extensions: 87190
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87068
Number of HSP's gapped (non-prelim): 122
length of query: 315
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 293
effective length of database: 17,147,199,772
effective search space: 5024129533196
effective search space used: 5024129533196
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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