ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2f23 |
|---|---|
| Clone Library Name | barley_pub |
>MST2_DROHY (Q08696) Axoneme-associated protein mst101(2)| Length = 1391 Score = 46.2 bits (108), Expect = 8e-05 Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 12/154 (7%) Frame = +3 Query: 156 QGNDSCDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQ--- 326 +G C + K A KK+C E +E ++ CE + ++ A K+QC + Sbjct: 963 KGKKKCKKLGKKSKRAAEKKKCA-EAAKKEKEAATKKKCEERAKKQKEAAEKKQCEERAK 1021 Query: 327 ---------QCMRYGLNLXXXXXXXXIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQ 479 QC L E + E +Q C+ + + K A KKQ Sbjct: 1022 KLKEAAEQKQCEERAKKLKEAAEKKQCEERAKKLKEAAEQK--QCEERAKKLKEAAEKKQ 1079 Query: 480 CVDECHRREHHHPSRAACERKCSHWRDPTRKERC 581 C +E ++E + CE + ++ K++C Sbjct: 1080 C-EERAKKEKEAAEKKQCEERAKKLKEAAEKKQC 1112 Score = 43.1 bits (100), Expect = 7e-04 Identities = 30/143 (20%), Positives = 55/143 (38%) Frame = +3 Query: 171 CDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLN 350 C+ + + K A KKQC +E +E + CE + ++ A K+QC ++ + Sbjct: 1064 CEERAKKLKEAAEKKQC-EERAKKEKEAAEKKQCEERAKKLKEAAEKKQCEERAKK---- 1118 Query: 351 LXXXXXXXXIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAA 530 E+ AE+ C+ + K A KK+C E ++E + Sbjct: 1119 ----------EKEAAEK--------KRCEEAAKREKEAAEKKKCA-EAAKKEKEATEKQK 1159 Query: 531 CERKCSHWRDPTRKERCVXTCMR 599 C ++ K++C R Sbjct: 1160 CAEAAKKEKEAAEKKKCAEAAKR 1182 Score = 37.7 bits (86), Expect = 0.029 Identities = 28/150 (18%), Positives = 55/150 (36%) Frame = +3 Query: 150 DDQGNDSCDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQ 329 ++ +C + K KK+C +E ++E + CE+ ++ A K++C + Sbjct: 360 EEDEKKACKELAKKKKEADEKKKC-EEAANKEKKAAEKKKCEKAAKERKEAAEKKKCEE- 417 Query: 330 CMRYGLNLXXXXXXXXIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREH 509 A + E + C+ ++ K A KK+C E ++E Sbjct: 418 ---------------------AAKKEKEAAERKKCEELAKNIKKAAEKKKC-KEAAKKEK 455 Query: 510 HHPSRAACERKCSHWRDPTRKERCVXTCMR 599 R CE + K++C T + Sbjct: 456 EAAERKKCEELAKKIKKAAEKKKCEETAKK 485 Score = 35.0 bits (79), Expect = 0.19 Identities = 27/137 (19%), Positives = 50/137 (36%) Frame = +3 Query: 171 CDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLN 350 C + K A KK+C ++ + + CE+ ++ A K++C + + Sbjct: 511 CKKLAKKEKETAEKKKC-EKAAKKRKEAAEKKKCEKAAKKRKEAAEKKKCEKSAKK---- 565 Query: 351 LXXXXXXXXIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAA 530 R A E + C+ + K A KK+C +E ++E R Sbjct: 566 -----------RKEAAEKK-------KCEKAAKERKEAAEKKKC-EEAAKKEKEVAERKK 606 Query: 531 CERKCSHWRDPTRKERC 581 CE + K++C Sbjct: 607 CEELAKKIKKAAEKKKC 623 Score = 34.3 bits (77), Expect = 0.32 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 8/151 (5%) Frame = +3 Query: 171 CDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLN 350 C+ + K A KK+C E +E + CE ++ A +++C + + Sbjct: 671 CEKAAKKRKEAAEKKKCA-EAAKKEKEAAEKKKCEEAAKKEKEAAERKKCEELAKKIKKA 729 Query: 351 LXXXXXXXXIERPHAEEVEVDDQSNDSCDH------KCQH--HKVPARKKQCVDECHRRE 506 ++ A E + N KC+ K A KK+C E ++E Sbjct: 730 AEKKKCKKLAKKKKAGEKNKLKKGNKKGKKALKEKKKCRELAKKKAAEKKKC-KEAAKKE 788 Query: 507 HHHPSRAACERKCSHWRDPTRKERCVXTCMR 599 + CE+ ++ K++C T + Sbjct: 789 KEAAEKKKCEKTAKKRKEEAEKKKCEKTAKK 819 Score = 30.4 bits (67), Expect = 4.6 Identities = 25/129 (19%), Positives = 49/129 (37%) Frame = +3 Query: 195 KVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLNLXXXXXXX 374 K A KK+C ++ +A C+ ++ K++C + + Sbjct: 343 KEEAEKKKCAALAKKQKEEDEKKA-CKELAKKKKEADEKKKCEEAANK------------ 389 Query: 375 XIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHW 554 E+ AE+ + C+ + K A KK+C +E ++E R CE + Sbjct: 390 --EKKAAEKKK--------CEKAAKERKEAAEKKKC-EEAAKKEKEAAERKKCEELAKNI 438 Query: 555 RDPTRKERC 581 + K++C Sbjct: 439 KKAAEKKKC 447
>VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A)| Length = 605 Score = 45.4 bits (106), Expect = 1e-04 Identities = 39/149 (26%), Positives = 59/149 (39%), Gaps = 4/149 (2%) Frame = +3 Query: 141 RPVDD--QGNDSCDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKE 314 R DD Q + C +CQ + R + D+C R E + DP R+ Sbjct: 32 RSEDDPQQRYEDCRKRCQ---LETRGQTEQDKCEDRSETQLK----EEQQRDGEDPQRRY 84 Query: 315 Q-CVQQCMRYGLNLXXXXXXXXIERPHAEEVEVDDQSNDSCDHKCQ-HHKVPARKKQCVD 488 Q C Q C + L E+ ++ + D+ C +CQ + P RK+QCV Sbjct: 85 QDCRQHCQQEERRLRPHCEQSCREQYEKQQQQQPDKQFKECQQRCQWQEQRPERKQQCVK 144 Query: 489 ECHRREHHHPSRAACERKCSHWRDPTRKE 575 EC + P + E K WR+ +E Sbjct: 145 ECREQYQEDPWKGERENK---WREEEEEE 170
>VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B)| Length = 588 Score = 43.9 bits (102), Expect = 4e-04 Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 13/127 (10%) Frame = +3 Query: 201 PARKKQCVDECHSREHHHPSRASCERKCSHW------------RDPARK-EQCVQQCMRY 341 P R + C C + CE C DP R+ E+C Q+C + Sbjct: 38 PKRYEDCRRRCEWDTRGQKEQQQCEESCKSQYGEKDQQQRHRPEDPQRRYEECQQECRQQ 97 Query: 342 GLNLXXXXXXXXIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPS 521 ++R E+ + Q + H Q + P RK+QCV EC R +P Sbjct: 98 EERQRPQCQQRCLKRFEQEQQQSQRQFQECQQHCHQQEQRPERKQQCVRECRERYQENPW 157 Query: 522 RAACERK 542 R E + Sbjct: 158 RREREEE 164 Score = 30.4 bits (67), Expect = 4.6 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%) Frame = +3 Query: 180 KCQHH-----KVPARKKQCVDECHSREHHHPSRASCERK 281 +CQ H + P RK+QCV EC R +P R E + Sbjct: 126 ECQQHCHQQEQRPERKQQCVRECRERYQENPWRREREEE 164
>MST1_DROHY (Q08695) Axoneme-associated protein mst101(1)| Length = 344 Score = 38.5 bits (88), Expect = 0.017 Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 3/140 (2%) Frame = +3 Query: 171 CDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLN 350 C + K A KK+C E +E + C ++ A K++C + + Sbjct: 109 CAEAAKKEKEAAEKKKCA-EAAKKEKEAAEKKKCAEAAKKEKEAAEKKKCAEAAKKEKEA 167 Query: 351 LXXXXXXXXIERPHAEEVEVDDQS---NDSCDHKCQHHKVPARKKQCVDECHRREHHHPS 521 ++ E+ +Q C + K A KK+C +E ++E Sbjct: 168 AEKKKCAEAAQKKKCAELAKKEQEAAEKKKCAEAAKKEKEAAEKKKC-EERAKKEKEAAE 226 Query: 522 RAACERKCSHWRDPTRKERC 581 + CE + ++ K++C Sbjct: 227 KKKCEERAKKEKEAAEKKKC 246
>VCL_THECC (Q43358) Vicilin precursor| Length = 525 Score = 32.3 bits (72), Expect = 1.2 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 1/104 (0%) Frame = +3 Query: 270 CERKC-SHWRDPARKEQCVQQCMRYGLNLXXXXXXXXIERPHAEEVEVDDQSNDSCDHKC 446 C+R+C S + +EQC Q+C ER + E+ + Sbjct: 45 CQRRCESEATEEREQEQCEQRC----------------EREYKEQ------------QRQ 76 Query: 447 QHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKER 578 Q ++ + +QC C ++ + C+RKC W +ER Sbjct: 77 QEEELQRQYQQCQGRCQEQQQGQREQQQCQRKC--WEQYKEQER 118
>TICN1_MOUSE (Q62288) Testican-1 precursor (SPOCK protein)| Length = 442 Score = 31.6 bits (70), Expect = 2.0 Identities = 32/125 (25%), Positives = 42/125 (33%), Gaps = 12/125 (9%) Frame = +3 Query: 153 DQGNDSC-DIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQC--- 320 D D C +KC HKV + C SR+H P + HW P+ +C Sbjct: 83 DPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLGPSNLVKCKPC 142 Query: 321 --VQQCMRYGLNLXXXXXXXXIERPHAEEVEVDDQSNDSCDHKC------QHHKVPARKK 476 Q M G + +E HA N CD C + K A K Sbjct: 143 PVAQSAMVCGSDGHTYTSKCKLEF-HA--CSTGKSLNSLCDGPCPCLPEPEPLKPKAEKS 199 Query: 477 QCVDE 491 C D+ Sbjct: 200 ACTDK 204
>ATS20_HUMAN (P59510) ADAMTS-20 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 20) (ADAM-TS 20) (ADAM-TS20) Length = 1911 Score = 30.8 bits (68), Expect = 3.5 Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 1/125 (0%) Frame = +3 Query: 174 DIKCQHHKVPARKKQ-CVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLN 350 D +C H +P+ Q C +C R ++ C +C CM+Y ++ Sbjct: 884 DKECDHLPLPSFVTQSCNTDCELRGMLLAKKSECSSQCGQGY-----RTLDIHCMKYSIH 938 Query: 351 LXXXXXXXXIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAA 530 + V+VDD H C P ++ C C H+ + Sbjct: 939 -------------EGQTVQVDD-------HYCGDQLKPPTQELCHGNCVFTRWHYSEWSQ 978 Query: 531 CERKC 545 C R C Sbjct: 979 CSRSC 983
>GLCAP_SOYBN (P11827) Beta-conglycinin, alpha' chain precursor| Length = 639 Score = 30.8 bits (68), Expect = 3.5 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 13/113 (11%) Frame = +3 Query: 243 EHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLNLXXXXXXXXIERPHAEEVEVDDQS 422 E +PS C R C+ +D R + C +C + I RP + E + Q Sbjct: 29 EKQNPSHNKCLRSCNSEKDSYRNQACHARCNLLKVEEEEECEEGQIPRPRPQHPERERQQ 88 Query: 423 NDSCD-------------HKCQHHKVPARKKQCVDECHRREHHHPSRAACERK 542 + + Q H+ +++ E HR+E H + + E + Sbjct: 89 HGEKEEDEGEQPRPFPFPRPRQPHQEEEHEQKEEHEWHRKEEKHGGKGSEEEQ 141
>TICN1_HUMAN (Q08629) Testican-1 precursor (SPOCK protein)| Length = 439 Score = 30.8 bits (68), Expect = 3.5 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Frame = +3 Query: 153 DQGNDSC-DIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQC 320 D D C +KC HKV + C SR+H P + HW P+ +C Sbjct: 80 DPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAQKHWVGPSNLVKC 136
>MACA1_RHOOP (O84992) Maleylacetate reductase 1 (EC 1.3.1.32) (Maleylacetate| reductase I) Length = 357 Score = 30.0 bits (66), Expect = 6.0 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Frame = -1 Query: 327 AARTVPSLPGLSNGYTSSRKTPCLGDDAPGCGTRRRTVSSSPE--LYDV 187 AART L Y S TP LG+ G T R T++ PE +YDV Sbjct: 109 AARTGVDQVILPTTYAGSEVTPVLGETVEGRKTTRSTLAVLPETVIYDV 157
>PRG4_MOUSE (Q9JM99) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte| stimulating factor) (Superficial zone proteoglycan) [Contains: Proteoglycan-4 C-terminal part] Length = 1054 Score = 29.6 bits (65), Expect = 7.8 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Frame = +3 Query: 168 SCDIKCQHHK--VPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRY 341 +CD CQH+ P K+ C E SC+ +C R+ C QC +Y Sbjct: 45 NCDYNCQHYMECCPDFKRVCSPEL-----------SCKGRCFESFARGRECDCDSQCKQY 93 Query: 342 G 344 G Sbjct: 94 G 94
>VNCS_PAVPN (P18547) Noncapsid protein NS-1 (Nonstructural protein NS1)| Length = 660 Score = 29.6 bits (65), Expect = 7.8 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +1 Query: 436 TTSANIIKFRRGRSSAWTSATDGSIITRAGRLARGSVAI 552 TT A +I +RG ++W ATD + L +G V I Sbjct: 52 TTDAEMINLQRGAETSWDQATDMEWESEIDSLTKGQVLI 90 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,912,526 Number of Sequences: 219361 Number of extensions: 1536658 Number of successful extensions: 5371 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4494 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5342 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5881538857 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
