ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2f22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_466822.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2247 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 233 gaacgtcgtgaagctccatggatgctgcctggagtccgaggtccctctgctcgtctacga 292 |||| |||| |||||||||||||||||||| ||| |||||||| |||| |||||||| Sbjct: 1431 gaacatcgtcaagctccatggatgctgcctagaggtggaggtccccatgcttgtctacga 1490 Query: 293 gt 294 || Sbjct: 1491 gt 1492
>ref|XM_450741.1| Oryza sativa (japonica cultivar-group), mRNA Length = 993 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 566 ggcaccttcggctacttggatccggagtac 595 ||||||||||||||||| |||||||||||| Sbjct: 267 ggcaccttcggctacttcgatccggagtac 296
>gb|AF529043.1| Musa acuminata clone PTO-07 Pto-like serine/threonine kinase gene, partial cds Length = 337 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 571 cttcggctacttggatccggagtact 596 |||||||||||||||||||||||||| Sbjct: 75 cttcggctacttggatccggagtact 50
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 566 ggcaccttcggctacttggatccggagtac 595 ||||||||||||||||| |||||||||||| Sbjct: 12512777 ggcaccttcggctacttcgatccggagtac 12512748 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 451 gacatcaagtccatgaacgtgctcctc 477 ||||||||| ||||||||||||||||| Sbjct: 18323834 gacatcaaggccatgaacgtgctcctc 18323860
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 233 gaacgtcgtgaagctccatggatgctgcctggagtccgaggtccctctgctcgtctacga 292 |||| |||| |||||||||||||||||||| ||| |||||||| |||| |||||||| Sbjct: 24891055 gaacatcgtcaagctccatggatgctgcctagaggtggaggtccccatgcttgtctacga 24890996 Query: 293 gt 294 || Sbjct: 24890995 gt 24890994
>dbj|AP005637.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0711A01 Length = 162400 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 566 ggcaccttcggctacttggatccggagtac 595 ||||||||||||||||| |||||||||||| Sbjct: 28104 ggcaccttcggctacttcgatccggagtac 28075
>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1215B07 Length = 165957 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 233 gaacgtcgtgaagctccatggatgctgcctggagtccgaggtccctctgctcgtctacga 292 |||| |||| |||||||||||||||||||| ||| |||||||| |||| |||||||| Sbjct: 52338 gaacatcgtcaagctccatggatgctgcctagaggtggaggtccccatgcttgtctacga 52279 Query: 293 gt 294 || Sbjct: 52278 gt 52277
>dbj|AK062323.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-D01, full insert sequence Length = 993 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 566 ggcaccttcggctacttggatccggagtac 595 ||||||||||||||||| |||||||||||| Sbjct: 267 ggcaccttcggctacttcgatccggagtac 296
>ref|XM_550056.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2362 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 282 ctcgtctacgagtccgtctccaacggcacgctc 314 ||||||||||||| |||| |||||||||||||| Sbjct: 1391 ctcgtctacgagttcgtccccaacggcacgctc 1423
>ref|XM_471570.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2409 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 563 caaggcaccttcggctacttggatccggagtactaccacac 603 ||||||||||| |||||||| ||||| || ||||||||||| Sbjct: 1882 caaggcacctttggctacttagatccagaatactaccacac 1922
>emb|AL662995.2|OSJN00202 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032D24, complete sequence Length = 132465 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 563 caaggcaccttcggctacttggatccggagtactaccacac 603 ||||||||||| |||||||| ||||| || ||||||||||| Sbjct: 94874 caaggcacctttggctacttagatccagaatactaccacac 94914 Score = 40.1 bits (20), Expect = 8.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 564 aaggcaccttcggctacttggatccggagtactaccacac 603 |||||||||| ||||| || ||||| || ||||||||||| Sbjct: 74056 aaggcacctttggctatttagatccagaatactaccacac 74095
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 563 caaggcaccttcggctacttggatccggagtactaccacac 603 ||||||||||| |||||||| ||||| || ||||||||||| Sbjct: 12420846 caaggcacctttggctacttagatccagaatactaccacac 12420886 Score = 40.1 bits (20), Expect = 8.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 564 aaggcaccttcggctacttggatccggagtactaccacac 603 |||||||||| ||||| || ||||| || ||||||||||| Sbjct: 12400029 aaggcacctttggctatttagatccagaatactaccacac 12400068
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 282 ctcgtctacgagtccgtctccaacggcacgctc 314 ||||||||||||| |||| |||||||||||||| Sbjct: 25059073 ctcgtctacgagttcgtccccaacggcacgctc 25059105
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Minus Query: 282 ctcgtctacgagtccgtctccaacggcacgctc 314 ||||||||||||| |||| |||||||||||||| Sbjct: 1977394 ctcgtctacgagttcgtccccaacggcacgctc 1977362
>dbj|AP003250.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0443D08 Length = 146670 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Minus Query: 282 ctcgtctacgagtccgtctccaacggcacgctc 314 ||||||||||||| |||| |||||||||||||| Sbjct: 39972 ctcgtctacgagttcgtccccaacggcacgctc 39940
>emb|AL713904.3|CNS07YQ4 Oryza sativa chromosome 12, . BAC OJ1306_H03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121563 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Minus Query: 282 ctcgtctacgagtccgtctccaacggcacgctc 314 ||||||||||||| |||| |||||||||||||| Sbjct: 72406 ctcgtctacgagttcgtccccaacggcacgctc 72374
>dbj|AK121185.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084P22, full insert sequence Length = 2394 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 282 ctcgtctacgagtccgtctccaacggcacgctc 314 ||||||||||||| |||| |||||||||||||| Sbjct: 1411 ctcgtctacgagttcgtccccaacggcacgctc 1443
>dbj|AK101874.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070G15, full insert sequence Length = 2408 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 282 ctcgtctacgagtccgtctccaacggcacgctc 314 ||||||||||||| |||| |||||||||||||| Sbjct: 1441 ctcgtctacgagttcgtccccaacggcacgctc 1473
>dbj|AK099661.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013066L14, full insert sequence Length = 2361 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 282 ctcgtctacgagtccgtctccaacggcacgctc 314 ||||||||||||| |||| |||||||||||||| Sbjct: 1394 ctcgtctacgagttcgtccccaacggcacgctc 1426
>dbj|AK072425.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023098M23, full insert sequence Length = 2497 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 282 ctcgtctacgagtccgtctccaacggcacgctc 314 ||||||||||||| |||| |||||||||||||| Sbjct: 1484 ctcgtctacgagttcgtccccaacggcacgctc 1516
>dbj|AK072170.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129P20, full insert sequence Length = 2362 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 282 ctcgtctacgagtccgtctccaacggcacgctc 314 ||||||||||||| |||| |||||||||||||| Sbjct: 1391 ctcgtctacgagttcgtccccaacggcacgctc 1423
>dbj|AK067467.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104F01, full insert sequence Length = 2967 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 563 caaggcaccttcggctacttggatccggagtactaccacac 603 ||||||||||| |||||||| ||||| || ||||||||||| Sbjct: 2265 caaggcacctttggctacttagatccagaatactaccacac 2305
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 282 ctcgtctacgagtccgtctccaacggcacgctc 314 ||||||||||||| |||| |||||||||||||| Sbjct: 24987278 ctcgtctacgagttcgtccccaacggcacgctc 24987310
>emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa0056D07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146686 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Minus Query: 282 ctcgtctacgagtccgtctccaacggcacgctc 314 ||||||||||||| |||| |||||||||||||| Sbjct: 48095 ctcgtctacgagttcgtccccaacggcacgctc 48063
>ref|NM_194513.1| Oryza sativa (japonica cultivar-group) putative protein kinase (OSJNBa0071K19.13), mRNA Length = 1707 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 280 tgctcgtctacgagtccgtctccaacggcac 310 ||||||||||||||| |||| |||||||||| Sbjct: 911 tgctcgtctacgagttcgtccccaacggcac 941
>gb|AC069324.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0071K19, complete sequence Length = 174752 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 280 tgctcgtctacgagtccgtctccaacggcac 310 ||||||||||||||| |||| |||||||||| Sbjct: 117591 tgctcgtctacgagttcgtccccaacggcac 117561
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 280 tgctcgtctacgagtccgtctccaacggcac 310 ||||||||||||||| |||| |||||||||| Sbjct: 352533 tgctcgtctacgagttcgtccccaacggcac 352503
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 280 tgctcgtctacgagtccgtctccaacggcac 310 ||||||||||||||| |||| |||||||||| Sbjct: 352533 tgctcgtctacgagttcgtccccaacggcac 352503
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463G11 Length = 154188 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 451 gacatcaagtccatgaacgtgctcctc 477 ||||||||| ||||||||||||||||| Sbjct: 38570 gacatcaaggccatgaacgtgctcctc 38596
>dbj|AK100339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081I19, full insert sequence Length = 2160 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 280 tgctcgtctacgagtccgtctccaacggcac 310 ||||||||||||||| |||| |||||||||| Sbjct: 1132 tgctcgtctacgagttcgtccccaacggcac 1162
>dbj|AK071821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114J15, full insert sequence Length = 1977 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 280 tgctcgtctacgagtccgtctccaacggcac 310 ||||||||||||||| |||| |||||||||| Sbjct: 1132 tgctcgtctacgagttcgtccccaacggcac 1162
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 280 tgctcgtctacgagtccgtctccaacggcac 310 ||||||||||||||| |||| |||||||||| Sbjct: 352530 tgctcgtctacgagttcgtccccaacggcac 352500
>gb|AC154652.2| Mus musculus BAC clone RP24-261L18 from chromosome 17, complete sequence Length = 166922 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 41 aatggtcctgaccatggcggct 62 |||||||||||||||||||||| Sbjct: 92300 aatggtcctgaccatggcggct 92279
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 383 agccgccgagatcgccggcgcg 404 |||||||||||||||||||||| Sbjct: 259333 agccgccgagatcgccggcgcg 259312 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 ccgccgagatcgccggcgcg 404 |||||||||||||||||||| Sbjct: 3213834 ccgccgagatcgccggcgcg 3213815
>gb|AC121560.17| Mus musculus chromosome 16, clone RP24-398G11, complete sequence Length = 189161 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 gccatcaagagggcaatgctg 172 ||||||||||||||||||||| Sbjct: 15614 gccatcaagagggcaatgctg 15634
>ref|NM_188885.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1038 Score = 42.1 bits (21), Expect = 2.2 Identities = 81/101 (80%), Gaps = 5/101 (4%) Strand = Plus / Plus Query: 214 catcctgtcgcagatcaac-----gaacgtcgtgaagctccatggatgctgcctggagtc 268 |||||| |||||||||||| ||||||||| ||||| | || |||||||| ||| Sbjct: 291 catcctctcgcagatcaaccacaggaacgtcgtcaagctgctcggctgctgcctcgaggt 350 Query: 269 cgaggtccctctgctcgtctacgagtccgtctccaacggca 309 | ||||||| ||||||| ||||||| |||| ||||||||| Sbjct: 351 ccaggtccccatgctcgtgtacgagtacgtccccaacggca 391
>ref|XM_475711.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 945 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 566 ggcaccttcggctacttggatccggagta 594 ||||||||||||||||||| |||||||| Sbjct: 187 ggcaccttcggctacttggcgccggagta 215
>gb|AC024957.9| Mus musculus chromosome 16, clone RP23-178A24, complete sequence Length = 229563 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 gccatcaagagggcaatgctg 172 ||||||||||||||||||||| Sbjct: 25653 gccatcaagagggcaatgctg 25633
>gb|AY064216.1| Capsicum annuum receptor protein kinase-like protein mRNA, complete cds Length = 2312 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 492 ggcaaaggtttcggatttcgg 512 ||||||||||||||||||||| Sbjct: 1374 ggcaaaggtttcggatttcgg 1394
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.2 Identities = 81/101 (80%), Gaps = 5/101 (4%) Strand = Plus / Minus Query: 214 catcctgtcgcagatcaac-----gaacgtcgtgaagctccatggatgctgcctggagtc 268 |||||| |||||||||||| ||||||||| ||||| | || |||||||| ||| Sbjct: 16912561 catcctctcgcagatcaaccacaggaacgtcgtcaagctgctcggctgctgcctcgaggt 16912502 Query: 269 cgaggtccctctgctcgtctacgagtccgtctccaacggca 309 | ||||||| ||||||| ||||||| |||| ||||||||| Sbjct: 16912501 ccaggtccccatgctcgtgtacgagtacgtccccaacggca 16912461
>dbj|AP003913.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1484_G09 Length = 124695 Score = 42.1 bits (21), Expect = 2.2 Identities = 81/101 (80%), Gaps = 5/101 (4%) Strand = Plus / Minus Query: 214 catcctgtcgcagatcaac-----gaacgtcgtgaagctccatggatgctgcctggagtc 268 |||||| |||||||||||| ||||||||| ||||| | || |||||||| ||| Sbjct: 59572 catcctctcgcagatcaaccacaggaacgtcgtcaagctgctcggctgctgcctcgaggt 59513 Query: 269 cgaggtccctctgctcgtctacgagtccgtctccaacggca 309 | ||||||| ||||||| ||||||| |||| ||||||||| Sbjct: 59512 ccaggtccccatgctcgtgtacgagtacgtccccaacggca 59472
>dbj|AK110196.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-162-B01, full insert sequence Length = 3070 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 566 ggcaccttcggctacttggatccggagta 594 ||||||||||||||||||| |||||||| Sbjct: 1851 ggcaccttcggctacttggcgccggagta 1879
>gb|AY439015.3| Mycobacterium smegmatis isolate mc2 155 insertion sequence IS1096 TnpA (tnpA) and TnpR genes, complete cds; and GPL gene cluster, complete sequence Length = 67229 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 cgagatcgagcagttcatcaa 204 ||||||||||||||||||||| Sbjct: 43510 cgagatcgagcagttcatcaa 43490
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 511 ggcgcgtcgaggtcgatgccg 531 ||||||||||||||||||||| Sbjct: 2279283 ggcgcgtcgaggtcgatgccg 2279303
>ref|NM_124354.2| Arabidopsis thaliana kinase AT5G49760 mRNA, complete cds Length = 3416 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 575 ggctacttggatccggagtactac 598 |||||||||||||| ||||||||| Sbjct: 2696 ggctacttggatccagagtactac 2719
>ref|NM_124356.1| Arabidopsis thaliana ATP binding / kinase/ protein serine/threonine kinase AT5G49780 mRNA, complete cds Length = 3021 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 575 ggctacttggatccggagtactac 598 |||||||||||||| ||||||||| Sbjct: 2545 ggctacttggatcctgagtactac 2568
>ref|NM_184772.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1506 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 ctcgtctacgagtccgtctccaac 305 ||||||||||||| |||||||||| Sbjct: 715 ctcgtctacgagttcgtctccaac 738
>ref|XM_469705.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1467 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 tcgagcagttcatcaacgag 208 |||||||||||||||||||| Sbjct: 1160 tcgagcagttcatcaacgag 1179
>gb|AF491307.2| Pseudomonas putida NCIB 9816-4 plasmid pDTG1, complete sequence Length = 83042 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 598 ccacacgggccgattaaccg 617 |||||||||||||||||||| Sbjct: 39239 ccacacgggccgattaaccg 39258
>gb|AC108499.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1187_E11, complete sequence Length = 133352 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 aagagggcaatgctggtggc 177 |||||||||||||||||||| Sbjct: 73509 aagagggcaatgctggtggc 73490
>gb|AY208917.2| Pseudomonas sp. ND6 plasmid pND6-1, complete sequence Length = 101858 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 598 ccacacgggccgattaaccg 617 |||||||||||||||||||| Sbjct: 79044 ccacacgggccgattaaccg 79063
>gb|AY658583.1| Synthetic construct Peudomonas aeruginosa clone FLH034092.01F PA5505 gene, partial cds Length = 783 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 179 agcgccgagatcgagcagttcatc 202 |||||||||||| ||||||||||| Sbjct: 721 agcgccgagatcaagcagttcatc 744
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 tcgagcagttcatcaacgag 208 |||||||||||||||||||| Sbjct: 30317829 tcgagcagttcatcaacgag 30317810 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 ctcgtctacgagtccgtctccaac 305 ||||||||||||| |||||||||| Sbjct: 20378377 ctcgtctacgagttcgtctccaac 20378400
>gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0076M06, complete sequence Length = 133581 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 caacggcgagcaagatggca 345 |||||||||||||||||||| Sbjct: 82960 caacggcgagcaagatggca 82979
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 512 gcgcgtcgaggtcgatgccg 531 |||||||||||||||||||| Sbjct: 3449338 gcgcgtcgaggtcgatgccg 3449319
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 512 gcgcgtcgaggtcgatgccg 531 |||||||||||||||||||| Sbjct: 2584385 gcgcgtcgaggtcgatgccg 2584404
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 514 gcgtcgaggtcgatgccggt 533 |||||||||||||||||||| Sbjct: 835353 gcgtcgaggtcgatgccggt 835372
>ref|XM_967136.1| PREDICTED: Tribolium castaneum similar to CG33087-PC (LOC660942), mRNA Length = 5619 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 288 tacgagtccgtctccaacggcacg 311 ||||||||||||| |||||||||| Sbjct: 5512 tacgagtccgtctacaacggcacg 5535
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 cgccgagatcgccggcgcgc 405 |||||||||||||||||||| Sbjct: 293374 cgccgagatcgccggcgcgc 293355
>emb|AL583920.1|MLEPRTN4 Mycobacterium leprae strain TN complete genome; segment 4/10 Length = 348450 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 tcggcggcttcgatgtcgat 440 |||||||||||||||||||| Sbjct: 190332 tcggcggcttcgatgtcgat 190351
>gb|AF425991.1| Streptomyces coelicolor A3(2) putative membrane protein (ecrB) gene, partial cds; putative two-component sensor kinase (ecrA1) gene, complete cds; and putative two-component response regulator (ecrA2) gene, partial cds Length = 4039 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 cgccgagatcgccggcgcgc 405 |||||||||||||||||||| Sbjct: 238 cgccgagatcgccggcgcgc 257
>dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, complete sequence Length = 1857073 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 598 ccacacgggccgattaaccg 617 |||||||||||||||||||| Sbjct: 1266241 ccacacgggccgattaaccg 1266222
>gb|U15181.1|MLU15181 Mycobacterium leprae cosmid B1764 Length = 35961 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 tcggcggcttcgatgtcgat 440 |||||||||||||||||||| Sbjct: 6151 tcggcggcttcgatgtcgat 6170
>gb|AF445784.1|AF445784 Triticum aestivum clone KSUK960 kinase R-like protein gene, partial cds Length = 536 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 563 caaggcaccttcggctacttggatccggagta 594 |||||||| || || ||||||||||||||||| Sbjct: 83 caaggcacatttgggtacttggatccggagta 52
>dbj|AK221242.1| Arabidopsis thaliana mRNA for receptor protein kinase-like, complete cds, clone: RAFL24-01-J08 Length = 3127 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 575 ggctacttggatccggagtactac 598 |||||||||||||| ||||||||| Sbjct: 2555 ggctacttggatcctgagtactac 2578
>gb|BT006486.1| Arabidopsis thaliana At5g49760 gene, complete cds Length = 2862 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 575 ggctacttggatccggagtactac 598 |||||||||||||| ||||||||| Sbjct: 2389 ggctacttggatccagagtactac 2412
>gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genomic sequence, complete sequence Length = 130359 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 tcgagcagttcatcaacgag 208 |||||||||||||||||||| Sbjct: 109509 tcgagcagttcatcaacgag 109490
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 caacggcgagcaagatggca 345 |||||||||||||||||||| Sbjct: 26281311 caacggcgagcaagatggca 26281330
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 282 ctcgtctacgagtccgtctccaacggcacgct 313 ||||||||||| | ||||||||||| |||||| Sbjct: 16546645 ctcgtctacgacttcgtctccaacgacacgct 16546676
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 aagagggcaatgctggtggc 177 |||||||||||||||||||| Sbjct: 26048748 aagagggcaatgctggtggc 26048729
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 tcgagcagttcatcaacgag 208 |||||||||||||||||||| Sbjct: 30409251 tcgagcagttcatcaacgag 30409232 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 ctcgtctacgagtccgtctccaac 305 ||||||||||||| |||||||||| Sbjct: 20371406 ctcgtctacgagttcgtctccaac 20371429
>emb|BX829494.1|CNS09ZX2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB17ZC04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1321 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 575 ggctacttggatccggagtactac 598 |||||||||||||| ||||||||| Sbjct: 775 ggctacttggatccagagtactac 798
>gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B24 genomic sequence, complete sequence Length = 152883 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 ctcgtctacgagtccgtctccaac 305 ||||||||||||| |||||||||| Sbjct: 22677 ctcgtctacgagttcgtctccaac 22700
>gb|AE004963.1| Pseudomonas aeruginosa PAO1, section 524 of 529 of the complete genome Length = 11105 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 179 agcgccgagatcgagcagttcatc 202 |||||||||||| ||||||||||| Sbjct: 2615 agcgccgagatcaagcagttcatc 2638
>dbj|AP004728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0583E12 Length = 152449 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 282 ctcgtctacgagtccgtctccaacggcacgct 313 ||||||||||| | ||||||||||| |||||| Sbjct: 42625 ctcgtctacgacttcgtctccaacgacacgct 42656
>dbj|AK117123.1| Arabidopsis thaliana At5g49760 mRNA for putative receptor protein kinase, complete cds, clone: RAFL16-66-A16 Length = 3417 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 575 ggctacttggatccggagtactac 598 |||||||||||||| ||||||||| Sbjct: 2696 ggctacttggatccagagtactac 2719
>dbj|AB025613.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K2I5 Length = 71807 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 575 ggctacttggatccggagtactac 598 |||||||||||||| ||||||||| Sbjct: 69624 ggctacttggatcctgagtactac 69647 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 575 ggctacttggatccggagtactac 598 |||||||||||||| ||||||||| Sbjct: 57584 ggctacttggatccagagtactac 57607
>dbj|AK099276.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105H10, full insert sequence Length = 2393 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 ctcgtctacgagtccgtctccaac 305 ||||||||||||| |||||||||| Sbjct: 1445 ctcgtctacgagttcgtctccaac 1468
>dbj|AK070389.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048I16, full insert sequence Length = 2466 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 ctcgtctacgagtccgtctccaac 305 ||||||||||||| |||||||||| Sbjct: 1518 ctcgtctacgagttcgtctccaac 1541
>gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete sequence Length = 1844853 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 598 ccacacgggccgattaaccg 617 |||||||||||||||||||| Sbjct: 644463 ccacacgggccgattaaccg 644444
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 caacggcgagcaagatggca 345 |||||||||||||||||||| Sbjct: 26595569 caacggcgagcaagatggca 26595588
>gb|DQ280500.1| Streptomyces olindensis DAUFPE 5622 cosmomycin gene cluster, partial sequence Length = 14080 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 cgcgtcgaggtcgatgccgg 532 |||||||||||||||||||| Sbjct: 6253 cgcgtcgaggtcgatgccgg 6234
>dbj|AB019194.1| Mycobacterium leprae rpoT gene, complete cds, strain:Kyoto-2 Length = 1909 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 tcggcggcttcgatgtcgat 440 |||||||||||||||||||| Sbjct: 687 tcggcggcttcgatgtcgat 668
>dbj|AB019193.1| Mycobacterium leprae rpoT gene, complete cds, isolate:Thai 53 Length = 1903 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 tcggcggcttcgatgtcgat 440 |||||||||||||||||||| Sbjct: 681 tcggcggcttcgatgtcgat 662 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,038,521 Number of Sequences: 3902068 Number of extensions: 3038521 Number of successful extensions: 58204 Number of sequences better than 10.0: 84 Number of HSP's better than 10.0 without gapping: 84 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 56948 Number of HSP's gapped (non-prelim): 1268 length of query: 624 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 601 effective length of database: 17,143,297,704 effective search space: 10303121920104 effective search space used: 10303121920104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
