>NMD3A_RAT (Q9R1M7) Glutamate [NMDA] receptor subunit 3A precursor|
           (N-methyl-D-aspartate receptor subtype 3A) (NR3A)
           (NMDAR-L) (NMDAR-L1) (N-methyl-D-aspartate receptor)
           (Chi-1)
          Length = 1135

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -1

Query: 173 QEGTRVGSNRQFPRPGISLPPRTTQAA-WVGRT---RCPASGGDSRLGQARGRET 21
           QEG R G+ R  P  G   PP  +Q A W+G     R P   G  +LG+  G ET
Sbjct: 69  QEGGRAGAQRDDPESGTWRPPAPSQGARWLGSALHGRGPP--GSRKLGEGAGAET 121

>COAA1_HUMAN (Q03692) Collagen alpha-1(X) chain precursor|
          Length = 680

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 24/79 (30%), Positives = 31/79 (39%)
 Frame = -2

Query: 259 QSAISPRGPPRTARRWKAAPPSRRGEKGIRRGRAWEATVSFPGRVFPYPREPRKRLG*EG 80
           Q    P GPP   +R +   P + G KG R          FPG + P        +G  G
Sbjct: 208 QGPTGPSGPPGVGKRGENGVPGQPGIKGDR---------GFPGEMGP--------IGPPG 250

Query: 79  PDAPPAEETLDWGKQGEGR 23
           P  PP E     G +G G+
Sbjct: 251 PQGPPGER----GPEGIGK 265

>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
 Frame = -2

Query: 244  PRGPPRTARRWKAAPPSRRGEKGIRRGRAWEATVSFP-GRVFPYPREPRKRLG*EGPDAP 68
            P GP  T     A PP  +G KG R       T  FP GR  P P       G  GP   
Sbjct: 840  PAGP--TGSSGPAGPPGPQGVKGERGSPGGPGTAGFPGGRGLPGPPGNNGNPGPPGPSGA 897

Query: 67   PAEE 56
            P ++
Sbjct: 898  PGKD 901

>QUEA_SYNPX (Q7U8E8) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC|
           5.-.-.-) (Queuosine biosynthesis protein queA)
          Length = 366

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +3

Query: 129 RPGKLTVASHARPLLIPFSPRRDGGAAFHLLAVRGGPRGE----IAD*PDRRRRPGSAL 293
           +PG L V ++ R L      RR GG    LL +   PRGE        P +R RPG  L
Sbjct: 60  QPGDLLVVNNTRVLKARLKVRRSGGGLSELLVLE--PRGEGRWLCLARPAKRMRPGDVL 116

>CO4A5_CANFA (Q28247) Collagen alpha-5(IV) chain precursor|
          Length = 1691

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
 Frame = -2

Query: 238 GPPRTARRWKAAPPSRRGEKGIRRGRAWEATVSFPGRVFP----YPREP--RKRLG*EGP 77
           GPP TA      PP   GE+G ++G      +S PG  FP     P  P  R   G  GP
Sbjct: 386 GPPGTAVMGPPGPPGFPGERG-QKGDEGPPGISIPG--FPGLDGQPGAPGLRGPPGPPGP 442

Query: 76  DAPPAEETLDWGKQG 32
              P++E  + G  G
Sbjct: 443 HISPSDEICETGPPG 457

>COCA1_CHICK (P13944) Collagen alpha-1(XII) chain precursor (Fibrochimerin)|
          Length = 3124

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 21/68 (30%), Positives = 25/68 (36%)
 Frame = -2

Query: 259  QSAISPRGPPRTARRWKAAPPSRRGEKGIRRGRAWEATVSFPGRVFPYPREPRKRLG*EG 80
            Q ++ P GPP         PP   G KG R  R    +   PG        PR   G  G
Sbjct: 2747 QDSVGPPGPP--------GPPGGPGAKGPRGERGLTGSSGPPG--------PRGETGPPG 2790

Query: 79   PDAPPAEE 56
            P  PP  +
Sbjct: 2791 PQGPPGPQ 2798

>CO8A2_MOUSE (P25318) Collagen alpha-2(VIII) chain precursor (Endothelial|
           collagen)
          Length = 699

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 28/91 (30%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
 Frame = -2

Query: 244 PRGPPRTARRWKAAP------------PSRRGEKGIRRGRAWEATVSFPGRVFPYPREPR 101
           P GPP  +R  KA P            P  RGE GIR  +        PG   P      
Sbjct: 109 PAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITVP 168

Query: 100 KRLG*EGPDAPPAEETLDWGKQGEGRRRRSR 8
            + G +G   PP     + G QGE   R  R
Sbjct: 169 GKPGAQGAPGPPGFRG-EPGPQGEPGPRGDR 198

>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
 Frame = -1

Query: 305 NSALEGAAWPSPPVRSVGDLSTGTS-----PDXXXXXXXXXXXXXXXGDQEGTRVGSNRQ 141
           +SA  G   P+P VRS+   S+ +S      D                D   +  G   +
Sbjct: 166 SSASPGGGSPAPRVRSISISSSSSSSSSMDEDDQADGAGASSSSSSSSDDSDSDEGGEEE 225

Query: 140 FPRPGISLPPRTTQAAWVGRTRCPASGGD 54
            PRP  S     T +A    +  P+SGGD
Sbjct: 226 TPRPRHSQNAAKTPSA--AGSPGPSSGGD 252

>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
 Frame = -1

Query: 305 NSALEGAAWPSPPVRSVGDLSTGTS-----PDXXXXXXXXXXXXXXXGDQEGTRVGSNRQ 141
           +SA  G   P+P VRS+   S+ +S      D                D   +  G   +
Sbjct: 166 SSASPGGGSPAPRVRSISISSSSSSSSSMDEDDQADGAGASSSSSSSSDDSDSDEGGEEE 225

Query: 140 FPRPGISLPPRTTQAAWVGRTRCPASGGD 54
            PRP  S     T +A    +  P+SGGD
Sbjct: 226 TPRPRHSQNAAKTPSA--AGSPGPSSGGD 252

>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
 Frame = -1

Query: 305 NSALEGAAWPSPPVRSVGDLSTGTS-----PDXXXXXXXXXXXXXXXGDQEGTRVGSNRQ 141
           +SA  G   P+P VRS+   S+ +S      D                D   +  G   +
Sbjct: 166 SSASPGGGSPAPRVRSISISSSSSSSSSMDEDDQADGAGASSSSSSSSDDSDSDEGGEEE 225

Query: 140 FPRPGISLPPRTTQAAWVGRTRCPASGGD 54
            PRP  S     T +A    +  P+SGGD
Sbjct: 226 TPRPRHSQNAAKTPSA--AGSPGPSSGGD 252

>COCA1_HUMAN (Q99715) Collagen alpha-1(XII) chain precursor|
          Length = 3063

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 20/68 (29%), Positives = 25/68 (36%)
 Frame = -2

Query: 259  QSAISPRGPPRTARRWKAAPPSRRGEKGIRRGRAWEATVSFPGRVFPYPREPRKRLG*EG 80
            Q ++ P GPP         P    G KG R  R     +  PG        PR  +G  G
Sbjct: 2743 QDSVGPPGPP--------GPAGGPGAKGPRGERGISGAIGPPG--------PRGDIGPPG 2786

Query: 79   PDAPPAEE 56
            P  PP  +
Sbjct: 2787 PQGPPGPQ 2794

>COBA2_HUMAN (P13942) Collagen alpha-2(XI) chain precursor|
          Length = 1736

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = -2

Query: 241  RGPPRTARRWKAAPPSRRGEKGIRRGRAWEATVSFPG-RVFPYPREPRKRLG*EGPDAPP 65
            RGP  T  R +  P    G+ G +     +     PG R  P P+ P    G +GP  PP
Sbjct: 840  RGP--TGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPP 897

Query: 64   AEETLDW--GKQGE 29
             ++ L    G++GE
Sbjct: 898  GKDGLPGHPGQRGE 911

>CO8A2_HUMAN (P25067) Collagen alpha-2(VIII) chain precursor (Endothelial|
           collagen)
          Length = 703

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 12/84 (14%)
 Frame = -2

Query: 244 PRGPPRTARRWKAAP------------PSRRGEKGIRRGRAWEATVSFPGRVFPYPREPR 101
           P GPP  +R  KA P            P  RGE GIR  +        PG   P      
Sbjct: 113 PAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIP 172

Query: 100 KRLG*EGPDAPPAEETLDWGKQGE 29
            + G +G   PP  +  + G QGE
Sbjct: 173 GKPGAQGVPGPPGFQG-EPGPQGE 195

>PARG_RAT (Q9QYM2) Poly(ADP-ribose) glycohydrolase (EC 3.2.1.143)|
          Length = 972

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -1

Query: 140 FPRPGISLPPRTTQAAWVGRTRCPASGGDSRL 45
           F RPG+  PP    A   G   C A GGD+RL
Sbjct: 848 FLRPGV--PPENLSAVATGNWGCGAFGGDARL 877

>CO4A4_BOVIN (Q29442) Collagen alpha-4(IV) chain (Fragment)|
          Length = 453

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 28/76 (36%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
 Frame = -2

Query: 238 GPPRTARRWKAAPPSRRGEKGIRRGRAWEATVSFPGRV-FPYPREPRKRLG*EGPDAPP- 65
           GPP   RR    PP  RGE G       +A    PG    P PR P   +G  G   PP 
Sbjct: 112 GPP--GRRGPLGPPGSRGEPG--PPADLDACPRIPGLPGVPGPRGPEGTMGLPGMRGPPG 167

Query: 64  ----AEETLDWGKQGE 29
                E  LD G++GE
Sbjct: 168 PGCKGEPGLD-GRRGE 182

>RB3GP_BRARE (Q6NUV0) Rab3 GTPase-activating protein catalytic subunit|
          Length = 969

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = -3

Query: 417 IKHLMPELIVHLDVRW----IVLGLDDSPPDQM*MLLHHAKQ 304
           + HL  E ++ +  RW    ++ GL   PPD    LLH   Q
Sbjct: 478 VAHLWQEFVLEMRYRWENNCLIYGLASGPPDLRCCLLHQKLQ 519

>GOR_PANTR (P48778) Exonuclease GOR (EC 3.1.-.-) (Antigen GOR) (RNA|
           exonuclease 1 homolog-like)
          Length = 427

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = -2

Query: 256 SAISPRGPPRTARRWKAAPPSRRG-EKGIRRGRAWEATVSFPGRVFPYPREPRKRLG*EG 80
           +AISP   P         PP R+  E G   GR  +   S P R  P PR P +      
Sbjct: 326 TAISPESSP--------CPPRRKAKETGAVDGRRGQKAKSNPNRPLPVPRNPCRGPSGLS 377

Query: 79  PDAPPAEETL 50
           P   P++ ++
Sbjct: 378 PSLCPSQTSV 387

>CABL2_HUMAN (Q9BTV7) CDK5 and ABL1 enzyme substrate 2 (Interactor with CDK3 2)|
           (Ik3-2)
          Length = 478

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = -2

Query: 253 AISPRGPPRTARRWKAA--PPSRRGEKGIRRGRAWEATVSFPGRVFPYPREPRKRLG*EG 80
           A  P GPP  A    AA  PP     +G  R R  +A + F   +    R P    G E 
Sbjct: 13  APGPAGPPPPAAPTSAARAPPQALRRRGDSRRR--QAALFFLNNISLDGRPPSLGPGGEK 70

Query: 79  PDAPPAE 59
           P  PPAE
Sbjct: 71  PPPPPAE 77

>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase) (Isozyme 1B)
          Length = 348

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 27/109 (24%), Positives = 33/109 (30%), Gaps = 8/109 (7%)
 Frame = -2

Query: 457 LPCSLTPYH-------ARRKDQASHARTYXXXXXXXXXXXXXRQSTRSNVNASSPC*AIX 299
           LP  L P H        RR  +  H R                 ST S   ++S   A  
Sbjct: 132 LPPRLGPAHDLPRRPLRRRHRKPGHRRRTSTTSTSASSGSSSAGSTGSRWTSASTRGAST 191

Query: 298 XXXXXXXXXXXXGQSAISPRGP-PRTARRWKAAPPSRRGEKGIRRGRAW 155
                            S   P PR  RRW+ A  + R     R GR+W
Sbjct: 192 SPRATPPTWQRSTSMPPSRASPWPRYGRRWRTAGTASRTTTRTRTGRSW 240

>PER15_ARATH (Q9SI16) Peroxidase 15 precursor (EC 1.11.1.7) (Atperox P15)|
           (ATP36)
          Length = 338

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -1

Query: 146 RQFPRPGISLPPRTTQAAWVG--RTRCPASGGDSRLGQ 39
           R + + G   P RT + ++    R RCP SGGD  L +
Sbjct: 216 RLYNQSGNGSPDRTLEQSYAANLRQRCPRSGGDQNLSE 253

>RF1_XANAC (Q8PNU5) Peptide chain release factor 1 (RF-1)|
          Length = 361

 Score = 24.6 bits (52), Expect(2) = 8.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 265 TGGDGQAAPSRAELLSMVKKHSHLIGWTVVEAEDDPSD 378
           TGGD +AA    +L  M  +++   GW V    D P +
Sbjct: 119 TGGD-EAAIFAGDLFRMYARYAERQGWKVEIESDSPGE 155



 Score = 22.7 bits (47), Expect(2) = 8.5
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 168 LLIPFSPRRDGGAAFHLLAVRGGPRGEI 251
           LL+P  PR DG     + A  GG    I
Sbjct: 99  LLVPRDPRDDGNLFLEVRAGTGGDEAAI 126


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,460,436
Number of Sequences: 219361
Number of extensions: 1410364
Number of successful extensions: 4910
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4905
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)