Clone Name | basd2f21 |
---|---|
Clone Library Name | barley_pub |
>NMD3A_RAT (Q9R1M7) Glutamate [NMDA] receptor subunit 3A precursor| (N-methyl-D-aspartate receptor subtype 3A) (NR3A) (NMDAR-L) (NMDAR-L1) (N-methyl-D-aspartate receptor) (Chi-1) Length = 1135 Score = 33.5 bits (75), Expect = 0.34 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 4/55 (7%) Frame = -1 Query: 173 QEGTRVGSNRQFPRPGISLPPRTTQAA-WVGRT---RCPASGGDSRLGQARGRET 21 QEG R G+ R P G PP +Q A W+G R P G +LG+ G ET Sbjct: 69 QEGGRAGAQRDDPESGTWRPPAPSQGARWLGSALHGRGPP--GSRKLGEGAGAET 121
>COAA1_HUMAN (Q03692) Collagen alpha-1(X) chain precursor| Length = 680 Score = 33.1 bits (74), Expect = 0.45 Identities = 24/79 (30%), Positives = 31/79 (39%) Frame = -2 Query: 259 QSAISPRGPPRTARRWKAAPPSRRGEKGIRRGRAWEATVSFPGRVFPYPREPRKRLG*EG 80 Q P GPP +R + P + G KG R FPG + P +G G Sbjct: 208 QGPTGPSGPPGVGKRGENGVPGQPGIKGDR---------GFPGEMGP--------IGPPG 250 Query: 79 PDAPPAEETLDWGKQGEGR 23 P PP E G +G G+ Sbjct: 251 PQGPPGER----GPEGIGK 265
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 31.6 bits (70), Expect = 1.3 Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Frame = -2 Query: 244 PRGPPRTARRWKAAPPSRRGEKGIRRGRAWEATVSFP-GRVFPYPREPRKRLG*EGPDAP 68 P GP T A PP +G KG R T FP GR P P G GP Sbjct: 840 PAGP--TGSSGPAGPPGPQGVKGERGSPGGPGTAGFPGGRGLPGPPGNNGNPGPPGPSGA 897 Query: 67 PAEE 56 P ++ Sbjct: 898 PGKD 901
>QUEA_SYNPX (Q7U8E8) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 366 Score = 31.6 bits (70), Expect = 1.3 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Frame = +3 Query: 129 RPGKLTVASHARPLLIPFSPRRDGGAAFHLLAVRGGPRGE----IAD*PDRRRRPGSAL 293 +PG L V ++ R L RR GG LL + PRGE P +R RPG L Sbjct: 60 QPGDLLVVNNTRVLKARLKVRRSGGGLSELLVLE--PRGEGRWLCLARPAKRMRPGDVL 116
>CO4A5_CANFA (Q28247) Collagen alpha-5(IV) chain precursor| Length = 1691 Score = 31.2 bits (69), Expect = 1.7 Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 6/75 (8%) Frame = -2 Query: 238 GPPRTARRWKAAPPSRRGEKGIRRGRAWEATVSFPGRVFP----YPREP--RKRLG*EGP 77 GPP TA PP GE+G ++G +S PG FP P P R G GP Sbjct: 386 GPPGTAVMGPPGPPGFPGERG-QKGDEGPPGISIPG--FPGLDGQPGAPGLRGPPGPPGP 442 Query: 76 DAPPAEETLDWGKQG 32 P++E + G G Sbjct: 443 HISPSDEICETGPPG 457
>COCA1_CHICK (P13944) Collagen alpha-1(XII) chain precursor (Fibrochimerin)| Length = 3124 Score = 30.8 bits (68), Expect = 2.2 Identities = 21/68 (30%), Positives = 25/68 (36%) Frame = -2 Query: 259 QSAISPRGPPRTARRWKAAPPSRRGEKGIRRGRAWEATVSFPGRVFPYPREPRKRLG*EG 80 Q ++ P GPP PP G KG R R + PG PR G G Sbjct: 2747 QDSVGPPGPP--------GPPGGPGAKGPRGERGLTGSSGPPG--------PRGETGPPG 2790 Query: 79 PDAPPAEE 56 P PP + Sbjct: 2791 PQGPPGPQ 2798
>CO8A2_MOUSE (P25318) Collagen alpha-2(VIII) chain precursor (Endothelial| collagen) Length = 699 Score = 30.0 bits (66), Expect = 3.8 Identities = 28/91 (30%), Positives = 33/91 (36%), Gaps = 12/91 (13%) Frame = -2 Query: 244 PRGPPRTARRWKAAP------------PSRRGEKGIRRGRAWEATVSFPGRVFPYPREPR 101 P GPP +R KA P P RGE GIR + PG P Sbjct: 109 PAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITVP 168 Query: 100 KRLG*EGPDAPPAEETLDWGKQGEGRRRRSR 8 + G +G PP + G QGE R R Sbjct: 169 GKPGAQGAPGPPGFRG-EPGPQGEPGPRGDR 198
>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.0 bits (66), Expect = 3.8 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 5/89 (5%) Frame = -1 Query: 305 NSALEGAAWPSPPVRSVGDLSTGTS-----PDXXXXXXXXXXXXXXXGDQEGTRVGSNRQ 141 +SA G P+P VRS+ S+ +S D D + G + Sbjct: 166 SSASPGGGSPAPRVRSISISSSSSSSSSMDEDDQADGAGASSSSSSSSDDSDSDEGGEEE 225 Query: 140 FPRPGISLPPRTTQAAWVGRTRCPASGGD 54 PRP S T +A + P+SGGD Sbjct: 226 TPRPRHSQNAAKTPSA--AGSPGPSSGGD 252
>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.0 bits (66), Expect = 3.8 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 5/89 (5%) Frame = -1 Query: 305 NSALEGAAWPSPPVRSVGDLSTGTS-----PDXXXXXXXXXXXXXXXGDQEGTRVGSNRQ 141 +SA G P+P VRS+ S+ +S D D + G + Sbjct: 166 SSASPGGGSPAPRVRSISISSSSSSSSSMDEDDQADGAGASSSSSSSSDDSDSDEGGEEE 225 Query: 140 FPRPGISLPPRTTQAAWVGRTRCPASGGD 54 PRP S T +A + P+SGGD Sbjct: 226 TPRPRHSQNAAKTPSA--AGSPGPSSGGD 252
>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.0 bits (66), Expect = 3.8 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 5/89 (5%) Frame = -1 Query: 305 NSALEGAAWPSPPVRSVGDLSTGTS-----PDXXXXXXXXXXXXXXXGDQEGTRVGSNRQ 141 +SA G P+P VRS+ S+ +S D D + G + Sbjct: 166 SSASPGGGSPAPRVRSISISSSSSSSSSMDEDDQADGAGASSSSSSSSDDSDSDEGGEEE 225 Query: 140 FPRPGISLPPRTTQAAWVGRTRCPASGGD 54 PRP S T +A + P+SGGD Sbjct: 226 TPRPRHSQNAAKTPSA--AGSPGPSSGGD 252
>COCA1_HUMAN (Q99715) Collagen alpha-1(XII) chain precursor| Length = 3063 Score = 29.6 bits (65), Expect = 5.0 Identities = 20/68 (29%), Positives = 25/68 (36%) Frame = -2 Query: 259 QSAISPRGPPRTARRWKAAPPSRRGEKGIRRGRAWEATVSFPGRVFPYPREPRKRLG*EG 80 Q ++ P GPP P G KG R R + PG PR +G G Sbjct: 2743 QDSVGPPGPP--------GPAGGPGAKGPRGERGISGAIGPPG--------PRGDIGPPG 2786 Query: 79 PDAPPAEE 56 P PP + Sbjct: 2787 PQGPPGPQ 2794
>COBA2_HUMAN (P13942) Collagen alpha-2(XI) chain precursor| Length = 1736 Score = 29.3 bits (64), Expect = 6.5 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Frame = -2 Query: 241 RGPPRTARRWKAAPPSRRGEKGIRRGRAWEATVSFPG-RVFPYPREPRKRLG*EGPDAPP 65 RGP T R + P G+ G + + PG R P P+ P G +GP PP Sbjct: 840 RGP--TGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPP 897 Query: 64 AEETLDW--GKQGE 29 ++ L G++GE Sbjct: 898 GKDGLPGHPGQRGE 911
>CO8A2_HUMAN (P25067) Collagen alpha-2(VIII) chain precursor (Endothelial| collagen) Length = 703 Score = 29.3 bits (64), Expect = 6.5 Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 12/84 (14%) Frame = -2 Query: 244 PRGPPRTARRWKAAP------------PSRRGEKGIRRGRAWEATVSFPGRVFPYPREPR 101 P GPP +R KA P P RGE GIR + PG P Sbjct: 113 PAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIP 172 Query: 100 KRLG*EGPDAPPAEETLDWGKQGE 29 + G +G PP + + G QGE Sbjct: 173 GKPGAQGVPGPPGFQG-EPGPQGE 195
>PARG_RAT (Q9QYM2) Poly(ADP-ribose) glycohydrolase (EC 3.2.1.143)| Length = 972 Score = 29.3 bits (64), Expect = 6.5 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = -1 Query: 140 FPRPGISLPPRTTQAAWVGRTRCPASGGDSRL 45 F RPG+ PP A G C A GGD+RL Sbjct: 848 FLRPGV--PPENLSAVATGNWGCGAFGGDARL 877
>CO4A4_BOVIN (Q29442) Collagen alpha-4(IV) chain (Fragment)| Length = 453 Score = 29.3 bits (64), Expect = 6.5 Identities = 28/76 (36%), Positives = 32/76 (42%), Gaps = 6/76 (7%) Frame = -2 Query: 238 GPPRTARRWKAAPPSRRGEKGIRRGRAWEATVSFPGRV-FPYPREPRKRLG*EGPDAPP- 65 GPP RR PP RGE G +A PG P PR P +G G PP Sbjct: 112 GPP--GRRGPLGPPGSRGEPG--PPADLDACPRIPGLPGVPGPRGPEGTMGLPGMRGPPG 167 Query: 64 ----AEETLDWGKQGE 29 E LD G++GE Sbjct: 168 PGCKGEPGLD-GRRGE 182
>RB3GP_BRARE (Q6NUV0) Rab3 GTPase-activating protein catalytic subunit| Length = 969 Score = 28.9 bits (63), Expect = 8.5 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%) Frame = -3 Query: 417 IKHLMPELIVHLDVRW----IVLGLDDSPPDQM*MLLHHAKQ 304 + HL E ++ + RW ++ GL PPD LLH Q Sbjct: 478 VAHLWQEFVLEMRYRWENNCLIYGLASGPPDLRCCLLHQKLQ 519
>GOR_PANTR (P48778) Exonuclease GOR (EC 3.1.-.-) (Antigen GOR) (RNA| exonuclease 1 homolog-like) Length = 427 Score = 28.9 bits (63), Expect = 8.5 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Frame = -2 Query: 256 SAISPRGPPRTARRWKAAPPSRRG-EKGIRRGRAWEATVSFPGRVFPYPREPRKRLG*EG 80 +AISP P PP R+ E G GR + S P R P PR P + Sbjct: 326 TAISPESSP--------CPPRRKAKETGAVDGRRGQKAKSNPNRPLPVPRNPCRGPSGLS 377 Query: 79 PDAPPAEETL 50 P P++ ++ Sbjct: 378 PSLCPSQTSV 387
>CABL2_HUMAN (Q9BTV7) CDK5 and ABL1 enzyme substrate 2 (Interactor with CDK3 2)| (Ik3-2) Length = 478 Score = 28.9 bits (63), Expect = 8.5 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Frame = -2 Query: 253 AISPRGPPRTARRWKAA--PPSRRGEKGIRRGRAWEATVSFPGRVFPYPREPRKRLG*EG 80 A P GPP A AA PP +G R R +A + F + R P G E Sbjct: 13 APGPAGPPPPAAPTSAARAPPQALRRRGDSRRR--QAALFFLNNISLDGRPPSLGPGGEK 70 Query: 79 PDAPPAE 59 P PPAE Sbjct: 71 PPPPPAE 77
>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) (Isozyme 1B) Length = 348 Score = 28.9 bits (63), Expect = 8.5 Identities = 27/109 (24%), Positives = 33/109 (30%), Gaps = 8/109 (7%) Frame = -2 Query: 457 LPCSLTPYH-------ARRKDQASHARTYXXXXXXXXXXXXXRQSTRSNVNASSPC*AIX 299 LP L P H RR + H R ST S ++S A Sbjct: 132 LPPRLGPAHDLPRRPLRRRHRKPGHRRRTSTTSTSASSGSSSAGSTGSRWTSASTRGAST 191 Query: 298 XXXXXXXXXXXXGQSAISPRGP-PRTARRWKAAPPSRRGEKGIRRGRAW 155 S P PR RRW+ A + R R GR+W Sbjct: 192 SPRATPPTWQRSTSMPPSRASPWPRYGRRWRTAGTASRTTTRTRTGRSW 240
>PER15_ARATH (Q9SI16) Peroxidase 15 precursor (EC 1.11.1.7) (Atperox P15)| (ATP36) Length = 338 Score = 28.9 bits (63), Expect = 8.5 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%) Frame = -1 Query: 146 RQFPRPGISLPPRTTQAAWVG--RTRCPASGGDSRLGQ 39 R + + G P RT + ++ R RCP SGGD L + Sbjct: 216 RLYNQSGNGSPDRTLEQSYAANLRQRCPRSGGDQNLSE 253
>RF1_XANAC (Q8PNU5) Peptide chain release factor 1 (RF-1)| Length = 361 Score = 24.6 bits (52), Expect(2) = 8.5 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +1 Query: 265 TGGDGQAAPSRAELLSMVKKHSHLIGWTVVEAEDDPSD 378 TGGD +AA +L M +++ GW V D P + Sbjct: 119 TGGD-EAAIFAGDLFRMYARYAERQGWKVEIESDSPGE 155 Score = 22.7 bits (47), Expect(2) = 8.5 Identities = 11/28 (39%), Positives = 13/28 (46%) Frame = +3 Query: 168 LLIPFSPRRDGGAAFHLLAVRGGPRGEI 251 LL+P PR DG + A GG I Sbjct: 99 LLVPRDPRDDGNLFLEVRAGTGGDEAAI 126 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,460,436 Number of Sequences: 219361 Number of extensions: 1410364 Number of successful extensions: 4910 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4697 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4905 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)