Clone Name | basd2f21 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_194498.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0096E22.9), mRNA Length = 1110 Score = 127 bits (64), Expect = 4e-26 Identities = 145/172 (84%) Strand = Plus / Plus Query: 313 atggtgaagaagcattcacatttgatcgggtggactgtcgtcgaggccgaggacgatcca 372 |||||||| || ||||| |||||||| |||||||| || || || || || || ||| || Sbjct: 1 atggtgaaaaaacattcccatttgattgggtggacagttgttgatgctgaagatgatgca 60 Query: 373 tcggacgtcgagatggacgataagttctggcatgagatgcttgatcttttcttcgtgcgt 432 || ||||| | ||||| ||| ||||||||||| |||||||||||||||||||||||| Sbjct: 61 tcagacgtgggaatggatgatcgattctggcatgaaatgcttgatcttttcttcgtgcgt 120 Query: 433 ggtagggtgtcaaggagcagggaagaggacgacctcgtcttctttgtcaata 484 |||||||| |||| ||| ||||||||||| ||||||||||| ||||| |||| Sbjct: 121 ggtagggtttcaaagaggagggaagaggatgacctcgtcttttttgttaata 172
>ref|XM_477275.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1463 Score = 127 bits (64), Expect = 4e-26 Identities = 145/172 (84%) Strand = Plus / Plus Query: 313 atggtgaagaagcattcacatttgatcgggtggactgtcgtcgaggccgaggacgatcca 372 |||||||| || ||||| |||||||| |||||||| || || || || || || ||| || Sbjct: 251 atggtgaaaaaacattcccatttgattgggtggacagttgttgatgctgaagatgatgca 310 Query: 373 tcggacgtcgagatggacgataagttctggcatgagatgcttgatcttttcttcgtgcgt 432 || ||||| | ||||| ||| ||||||||||| |||||||||||||||||||||||| Sbjct: 311 tcagacgtgggaatggatgatcgattctggcatgaaatgcttgatcttttcttcgtgcgt 370 Query: 433 ggtagggtgtcaaggagcagggaagaggacgacctcgtcttctttgtcaata 484 |||||||| |||| ||| ||||||||||| ||||||||||| ||||| |||| Sbjct: 371 ggtagggtttcaaagaggagggaagaggatgacctcgtcttttttgttaata 422
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 127 bits (64), Expect = 4e-26 Identities = 145/172 (84%) Strand = Plus / Plus Query: 313 atggtgaagaagcattcacatttgatcgggtggactgtcgtcgaggccgaggacgatcca 372 |||||||| || ||||| |||||||| |||||||| || || || || || || ||| || Sbjct: 207765 atggtgaaaaaacattcccatttgattgggtggacagttgttgatgctgaagatgatgca 207824 Query: 373 tcggacgtcgagatggacgataagttctggcatgagatgcttgatcttttcttcgtgcgt 432 || ||||| | ||||| ||| ||||||||||| |||||||||||||||||||||||| Sbjct: 207825 tcagacgtgggaatggatgatcgattctggcatgaaatgcttgatcttttcttcgtgcgt 207884 Query: 433 ggtagggtgtcaaggagcagggaagaggacgacctcgtcttctttgtcaata 484 |||||||| |||| ||| ||||||||||| ||||||||||| ||||| |||| Sbjct: 207885 ggtagggtttcaaagaggagggaagaggatgacctcgtcttttttgttaata 207936
>gb|AC099400.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0096E22, complete sequence Length = 133846 Score = 127 bits (64), Expect = 4e-26 Identities = 145/172 (84%) Strand = Plus / Plus Query: 313 atggtgaagaagcattcacatttgatcgggtggactgtcgtcgaggccgaggacgatcca 372 |||||||| || ||||| |||||||| |||||||| || || || || || || ||| || Sbjct: 57428 atggtgaaaaaacattcccatttgattgggtggacagttgttgatgctgaagatgatgca 57487 Query: 373 tcggacgtcgagatggacgataagttctggcatgagatgcttgatcttttcttcgtgcgt 432 || ||||| | ||||| ||| ||||||||||| |||||||||||||||||||||||| Sbjct: 57488 tcagacgtgggaatggatgatcgattctggcatgaaatgcttgatcttttcttcgtgcgt 57547 Query: 433 ggtagggtgtcaaggagcagggaagaggacgacctcgtcttctttgtcaata 484 |||||||| |||| ||| ||||||||||| ||||||||||| ||||| |||| Sbjct: 57548 ggtagggtttcaaagaggagggaagaggatgacctcgtcttttttgttaata 57599
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 127 bits (64), Expect = 4e-26 Identities = 145/172 (84%) Strand = Plus / Plus Query: 313 atggtgaagaagcattcacatttgatcgggtggactgtcgtcgaggccgaggacgatcca 372 |||||||| || ||||| |||||||| |||||||| || || || || || || ||| || Sbjct: 207765 atggtgaaaaaacattcccatttgattgggtggacagttgttgatgctgaagatgatgca 207824 Query: 373 tcggacgtcgagatggacgataagttctggcatgagatgcttgatcttttcttcgtgcgt 432 || ||||| | ||||| ||| ||||||||||| |||||||||||||||||||||||| Sbjct: 207825 tcagacgtgggaatggatgatcgattctggcatgaaatgcttgatcttttcttcgtgcgt 207884 Query: 433 ggtagggtgtcaaggagcagggaagaggacgacctcgtcttctttgtcaata 484 |||||||| |||| ||| ||||||||||| ||||||||||| ||||| |||| Sbjct: 207885 ggtagggtttcaaagaggagggaagaggatgacctcgtcttttttgttaata 207936
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 127 bits (64), Expect = 4e-26 Identities = 145/172 (84%) Strand = Plus / Minus Query: 313 atggtgaagaagcattcacatttgatcgggtggactgtcgtcgaggccgaggacgatcca 372 |||||||| || ||||| |||||||| |||||||| || || || || || || ||| || Sbjct: 8302822 atggtgaaaaaacattcccatttgattgggtggacagttgttgatgctgaagatgatgca 8302763 Query: 373 tcggacgtcgagatggacgataagttctggcatgagatgcttgatcttttcttcgtgcgt 432 || ||||| | ||||| ||| ||||||||||| |||||||||||||||||||||||| Sbjct: 8302762 tcagacgtgggaatggatgatcgattctggcatgaaatgcttgatcttttcttcgtgcgt 8302703 Query: 433 ggtagggtgtcaaggagcagggaagaggacgacctcgtcttctttgtcaata 484 |||||||| |||| ||| ||||||||||| ||||||||||| ||||| |||| Sbjct: 8302702 ggtagggtttcaaagaggagggaagaggatgacctcgtcttttttgttaata 8302651
>dbj|AP005183.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0021G06 Length = 137678 Score = 127 bits (64), Expect = 4e-26 Identities = 145/172 (84%) Strand = Plus / Minus Query: 313 atggtgaagaagcattcacatttgatcgggtggactgtcgtcgaggccgaggacgatcca 372 |||||||| || ||||| |||||||| |||||||| || || || || || || ||| || Sbjct: 7920 atggtgaaaaaacattcccatttgattgggtggacagttgttgatgctgaagatgatgca 7861 Query: 373 tcggacgtcgagatggacgataagttctggcatgagatgcttgatcttttcttcgtgcgt 432 || ||||| | ||||| ||| ||||||||||| |||||||||||||||||||||||| Sbjct: 7860 tcagacgtgggaatggatgatcgattctggcatgaaatgcttgatcttttcttcgtgcgt 7801 Query: 433 ggtagggtgtcaaggagcagggaagaggacgacctcgtcttctttgtcaata 484 |||||||| |||| ||| ||||||||||| ||||||||||| ||||| |||| Sbjct: 7800 ggtagggtttcaaagaggagggaagaggatgacctcgtcttttttgttaata 7749
>dbj|AP004344.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0639B07 Length = 138780 Score = 127 bits (64), Expect = 4e-26 Identities = 145/172 (84%) Strand = Plus / Minus Query: 313 atggtgaagaagcattcacatttgatcgggtggactgtcgtcgaggccgaggacgatcca 372 |||||||| || ||||| |||||||| |||||||| || || || || || || ||| || Sbjct: 97934 atggtgaaaaaacattcccatttgattgggtggacagttgttgatgctgaagatgatgca 97875 Query: 373 tcggacgtcgagatggacgataagttctggcatgagatgcttgatcttttcttcgtgcgt 432 || ||||| | ||||| ||| ||||||||||| |||||||||||||||||||||||| Sbjct: 97874 tcagacgtgggaatggatgatcgattctggcatgaaatgcttgatcttttcttcgtgcgt 97815 Query: 433 ggtagggtgtcaaggagcagggaagaggacgacctcgtcttctttgtcaata 484 |||||||| |||| ||| ||||||||||| ||||||||||| ||||| |||| Sbjct: 97814 ggtagggtttcaaagaggagggaagaggatgacctcgtcttttttgttaata 97763
>dbj|AK101732.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061G11, full insert sequence Length = 1613 Score = 127 bits (64), Expect = 4e-26 Identities = 145/172 (84%) Strand = Plus / Plus Query: 313 atggtgaagaagcattcacatttgatcgggtggactgtcgtcgaggccgaggacgatcca 372 |||||||| || ||||| |||||||| |||||||| || || || || || || ||| || Sbjct: 251 atggtgaaaaaacattcccatttgattgggtggacagttgttgatgctgaagatgatgca 310 Query: 373 tcggacgtcgagatggacgataagttctggcatgagatgcttgatcttttcttcgtgcgt 432 || ||||| | ||||| ||| ||||||||||| |||||||||||||||||||||||| Sbjct: 311 tcagacgtgggaatggatgatcgattctggcatgaaatgcttgatcttttcttcgtgcgt 370 Query: 433 ggtagggtgtcaaggagcagggaagaggacgacctcgtcttctttgtcaata 484 |||||||| |||| ||| ||||||||||| ||||||||||| ||||| |||| Sbjct: 371 ggtagggtttcaaagaggagggaagaggatgacctcgtcttttttgttaata 422
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 127 bits (64), Expect = 4e-26 Identities = 145/172 (84%) Strand = Plus / Plus Query: 313 atggtgaagaagcattcacatttgatcgggtggactgtcgtcgaggccgaggacgatcca 372 |||||||| || ||||| |||||||| |||||||| || || || || || || ||| || Sbjct: 207763 atggtgaaaaaacattcccatttgattgggtggacagttgttgatgctgaagatgatgca 207822 Query: 373 tcggacgtcgagatggacgataagttctggcatgagatgcttgatcttttcttcgtgcgt 432 || ||||| | ||||| ||| ||||||||||| |||||||||||||||||||||||| Sbjct: 207823 tcagacgtgggaatggatgatcgattctggcatgaaatgcttgatcttttcttcgtgcgt 207882 Query: 433 ggtagggtgtcaaggagcagggaagaggacgacctcgtcttctttgtcaata 484 |||||||| |||| ||| ||||||||||| ||||||||||| ||||| |||| Sbjct: 207883 ggtagggtttcaaagaggagggaagaggatgacctcgtcttttttgttaata 207934
>ref|XM_474688.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1218 Score = 111 bits (56), Expect = 2e-21 Identities = 143/172 (83%) Strand = Plus / Plus Query: 313 atggtgaagaagcattcacatttgatcgggtggactgtcgtcgaggccgaggacgatcca 372 |||||||| || |||||| |||||||||| ||||| || | || || || | ||| || Sbjct: 103 atggtgaaaaaacattcagatttgatcggctggacagttattgatgctgaagctgatgca 162 Query: 373 tcggacgtcgagatggacgataagttctggcatgagatgcttgatcttttcttcgtgcgt 432 || ||||| || ||||| ||||| ||||||||||| || ||||||||||||||||||| | Sbjct: 163 tcagacgtggaaatggatgataaattctggcatgaaatacttgatcttttcttcgtgcat 222 Query: 433 ggtagggtgtcaaggagcagggaagaggacgacctcgtcttctttgtcaata 484 |||||||| |||| | | ||||||||||| ||||| ||||||||||| |||| Sbjct: 223 ggtagggtttcaaaggggagggaagaggatgaccttgtcttctttgttaata 274
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 111 bits (56), Expect = 2e-21 Identities = 143/172 (83%) Strand = Plus / Minus Query: 313 atggtgaagaagcattcacatttgatcgggtggactgtcgtcgaggccgaggacgatcca 372 |||||||| || |||||| |||||||||| ||||| || | || || || | ||| || Sbjct: 5629541 atggtgaaaaaacattcagatttgatcggctggacagttattgatgctgaagctgatgca 5629482 Query: 373 tcggacgtcgagatggacgataagttctggcatgagatgcttgatcttttcttcgtgcgt 432 || ||||| || ||||| ||||| ||||||||||| || ||||||||||||||||||| | Sbjct: 5629481 tcagacgtggaaatggatgataaattctggcatgaaatacttgatcttttcttcgtgcat 5629422 Query: 433 ggtagggtgtcaaggagcagggaagaggacgacctcgtcttctttgtcaata 484 |||||||| |||| | | ||||||||||| ||||| ||||||||||| |||| Sbjct: 5629421 ggtagggtttcaaaggggagggaagaggatgaccttgtcttctttgttaata 5629370
>emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006L01, complete sequence Length = 162227 Score = 111 bits (56), Expect = 2e-21 Identities = 143/172 (83%) Strand = Plus / Minus Query: 313 atggtgaagaagcattcacatttgatcgggtggactgtcgtcgaggccgaggacgatcca 372 |||||||| || |||||| |||||||||| ||||| || | || || || | ||| || Sbjct: 86748 atggtgaaaaaacattcagatttgatcggctggacagttattgatgctgaagctgatgca 86689 Query: 373 tcggacgtcgagatggacgataagttctggcatgagatgcttgatcttttcttcgtgcgt 432 || ||||| || ||||| ||||| ||||||||||| || ||||||||||||||||||| | Sbjct: 86688 tcagacgtggaaatggatgataaattctggcatgaaatacttgatcttttcttcgtgcat 86629 Query: 433 ggtagggtgtcaaggagcagggaagaggacgacctcgtcttctttgtcaata 484 |||||||| |||| | | ||||||||||| ||||| ||||||||||| |||| Sbjct: 86628 ggtagggtttcaaaggggagggaagaggatgaccttgtcttctttgttaata 86577
>dbj|AK071690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114H04, full insert sequence Length = 1741 Score = 107 bits (54), Expect = 4e-20 Identities = 99/114 (86%) Strand = Plus / Plus Query: 371 catcggacgtcgagatggacgataagttctggcatgagatgcttgatcttttcttcgtgc 430 |||| ||||| || ||||| ||||| ||||||||||| || ||||||||||||||||||| Sbjct: 296 catcagacgtggaaatggatgataaattctggcatgaaatacttgatcttttcttcgtgc 355 Query: 431 gtggtagggtgtcaaggagcagggaagaggacgacctcgtcttctttgtcaata 484 ||||||||| |||| | | ||||||||||| ||||| ||||||||||| |||| Sbjct: 356 atggtagggtttcaaaggggagggaagaggatgaccttgtcttctttgttaata 409
>ref|XM_468088.1| Oryza sativa (japonica cultivar-group), mRNA Length = 774 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 203 cgccgccttccacctcctcgccgtcc 228 ||||||| |||||||||||||||||| Sbjct: 214 cgccgccctccacctcctcgccgtcc 189
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 203 cgccgccttccacctcctcgccgtcc 228 ||||||| |||||||||||||||||| Sbjct: 32984579 cgccgccctccacctcctcgccgtcc 32984554
>gb|AC152723.3| Ornithorhynchus anatinus chromosome UNK clone OABb-121A1, complete sequence Length = 142600 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 207 gccttccacctcctcgccgtcc 228 |||||||||||||||||||||| Sbjct: 54370 gccttccacctcctcgccgtcc 54349
>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1293_A01 Length = 139121 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 203 cgccgccttccacctcctcgccgtcc 228 ||||||| |||||||||||||||||| Sbjct: 30519 cgccgccctccacctcctcgccgtcc 30494
>gb|AC010849.3|AC010849 Homo sapiens chromosome 14 clone CTD-2540C19 map 14q31, complete sequence Length = 151659 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 489 gatgcagaaaatggaagatct 509 ||||||||||||||||||||| Sbjct: 6807 gatgcagaaaatggaagatct 6787
>emb|AL049837.4|CNS0000F Human chromosome 14 DNA sequence BAC R-959A22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 168677 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 489 gatgcagaaaatggaagatct 509 ||||||||||||||||||||| Sbjct: 13555 gatgcagaaaatggaagatct 13575
>gb|AC157495.2| Gallus gallus BAC clone CH261-13P20 from chromosome unknown, complete sequence Length = 228855 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 ctccccccgtcgcgatggcgg 202 ||||||||||||||||||||| Sbjct: 88359 ctccccccgtcgcgatggcgg 88339
>gb|AC135417.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1314_A05, complete sequence Length = 109853 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cggcgccgccttccacctcc 219 |||||||||||||||||||| Sbjct: 76305 cggcgccgccttccacctcc 76286
>gb|AC135424.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0015F11, complete sequence Length = 177574 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cggcgccgccttccacctcc 219 |||||||||||||||||||| Sbjct: 48391 cggcgccgccttccacctcc 48372
>gb|AC124353.5| Mus musculus BAC clone RP24-481I14 from chromosome 12, complete sequence Length = 152881 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 ctccgtctccgtctcccttcccct 35 |||||||| ||||||||||||||| Sbjct: 133981 ctccgtcttcgtctcccttcccct 134004
>gb|AC072048.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-189E15, complete sequence Length = 208661 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 tctccgtctcccttcccctt 36 |||||||||||||||||||| Sbjct: 68854 tctccgtctcccttcccctt 68873
>gb|AC136149.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0060B06, complete sequence Length = 162568 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 ctccgtctccgtctcccttcccct 35 |||||||||||||||||| ||||| Sbjct: 102326 ctccgtctccgtctccctccccct 102349
>gb|AC134328.2| Mus musculus BAC clone RP24-299H18 from chromosome 12, complete sequence Length = 189420 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 tctcccttccccttgcttgc 42 |||||||||||||||||||| Sbjct: 92260 tctcccttccccttgcttgc 92279
>gb|AC125225.4| Mus musculus BAC clone RP23-36I17 from 6, complete sequence Length = 215406 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 gctccgtctccgtctccctt 30 |||||||||||||||||||| Sbjct: 56872 gctccgtctccgtctccctt 56853
>gb|AY883559.2| Zea mays cultivar inbred line B73 teosinte glume architecture 1 (tga1) gene, complete cds Length = 169976 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 49 cgagagtctcctccgctggcgggg 72 |||||||||||||| ||||||||| Sbjct: 160271 cgagagtctcctccactggcgggg 160294
>dbj|AK138503.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330043P19 product:hypothetical PDZ/DHR/GLGF domain/PDZ domain profile containing protein, full insert sequence Length = 1360 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 ctccgtctccgtctcccttcccct 35 |||||||| ||||||||||||||| Sbjct: 1070 ctccgtcttcgtctcccttcccct 1047
>gb|AC108158.5| Homo sapiens BAC clone RP11-587F3 from 4, complete sequence Length = 10302 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 gtcaaggagcagggaagagg 460 |||||||||||||||||||| Sbjct: 1192 gtcaaggagcagggaagagg 1211
>gb|AC095059.3| Homo sapiens BAC clone RP11-428L21 from 4, complete sequence Length = 109586 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 gtcaaggagcagggaagagg 460 |||||||||||||||||||| Sbjct: 108778 gtcaaggagcagggaagagg 108797
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 ccacgcgcgtcccctcctgatccc 178 ||||||||||||||||| |||||| Sbjct: 3310469 ccacgcgcgtcccctccagatccc 3310446
>gb|AF314540.1|AF314540 Rattus norvegicus heat shock protein 22 mRNA, complete cds Length = 633 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 tcctacccaagccgcttgcg 103 |||||||||||||||||||| Sbjct: 73 tcctacccaagccgcttgcg 92
>gb|BC061748.1| Rattus norvegicus heat shock 22kDa protein 8, mRNA (cDNA clone MGC:72354 IMAGE:5599613), complete cds Length = 1795 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 tcctacccaagccgcttgcg 103 |||||||||||||||||||| Sbjct: 391 tcctacccaagccgcttgcg 410
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 270 cggcgacggccaggcagcgccctc 293 ||||||||||| |||||||||||| Sbjct: 8263243 cggcgacggcccggcagcgccctc 8263220
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 ctccgtctccgtctcccttcccct 35 |||||||||||||||||| ||||| Sbjct: 20559532 ctccgtctccgtctccctccccct 20559555
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 tctcccttccccttgcttgc 42 |||||||||||||||||||| Sbjct: 5915225 tctcccttccccttgcttgc 5915206
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 198 ggcggcgccgccttccacctcctcgccg 225 |||||||||||||||| ||||| ||||| Sbjct: 5649268 ggcggcgccgccttccgcctccccgccg 5649295
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cggcgccgccttccacctcc 219 |||||||||||||||||||| Sbjct: 15962640 cggcgccgccttccacctcc 15962621
>ref|NM_053612.2| Rattus norvegicus heat shock 22kDa protein 8 (Hspb8), mRNA Length = 1795 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 tcctacccaagccgcttgcg 103 |||||||||||||||||||| Sbjct: 391 tcctacccaagccgcttgcg 410
>gb|AC005519.3|AC005519 Homo sapiens PAC clone RP5-919J22 from 14q24.3, complete sequence Length = 163983 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 23 tctcccttccccttgcttgcccca 46 |||||||||||||||||| ||||| Sbjct: 118509 tctcccttccccttgcttccccca 118532
>dbj|AP005442.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0073I05 Length = 182291 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 tctcccttccccttgcttgc 42 |||||||||||||||||||| Sbjct: 102335 tctcccttccccttgcttgc 102316
>dbj|AP004687.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0021C04 Length = 162115 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 198 ggcggcgccgccttccacctcctcgccg 225 |||||||||||||||| ||||| ||||| Sbjct: 41415 ggcggcgccgccttccgcctccccgccg 41442
>dbj|AP004157.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1114_D06 Length = 107621 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 tctcccttccccttgcttgc 42 |||||||||||||||||||| Sbjct: 8328 tctcccttccccttgcttgc 8309
>dbj|AK066979.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013090N24, full insert sequence Length = 1410 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 198 ggcggcgccgccttccacctcctcgccg 225 |||||||||||||||| ||||| ||||| Sbjct: 174 ggcggcgccgccttccgcctccccgccg 201
>emb|Y14320.1|HSPMP693 Homo sapiens PMP69 gene, exons 3,4,5,6 & 7 Length = 6060 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 23 tctcccttccccttgcttgcccca 46 |||||||||||||||||| ||||| Sbjct: 2017 tctcccttccccttgcttccccca 2040
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 ctccgtctccgtctcccttcccct 35 |||||||||||||||||| ||||| Sbjct: 20869767 ctccgtctccgtctccctccccct 20869790
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 270 cggcgacggccaggcagcgccctc 293 ||||||||||| |||||||||||| Sbjct: 8263124 cggcgacggcccggcagcgccctc 8263101
>emb|AL772416.6|CNS08C9U Oryza sativa chromosome 12, . BAC OSJNBa0095H15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 142670 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 270 cggcgacggccaggcagcgccctc 293 ||||||||||| |||||||||||| Sbjct: 79652 cggcgacggcccggcagcgccctc 79675
>gb|AC126039.3| Mus musculus BAC clone RP24-234N22 from 12, complete sequence Length = 154037 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 ctccgtctccgtctcccttcccct 35 |||||||| ||||||||||||||| Sbjct: 101636 ctccgtcttcgtctcccttcccct 101613
>gb|DQ080083.1| Human papillomavirus type 102, complete genome Length = 8078 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ctgctctgctccgtctccgt 23 |||||||||||||||||||| Sbjct: 3391 ctgctctgctccgtctccgt 3372 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,752,451 Number of Sequences: 3902068 Number of extensions: 3752451 Number of successful extensions: 77184 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76478 Number of HSP's gapped (non-prelim): 706 length of query: 509 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 487 effective length of database: 17,147,199,772 effective search space: 8350686288964 effective search space used: 8350686288964 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)