Clone Name | basd2f19 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK072047.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111G24, full insert sequence Length = 2183 Score = 373 bits (188), Expect = e-100 Identities = 276/304 (90%), Gaps = 1/304 (0%) Strand = Plus / Plus Query: 2 ggtgcacggtagcaacaagnaagtttgatgccgatgtttctcttgaagtcattgcaatga 61 ||||||||||||||||||| ||||| ||| | ||||| |||||||||||||| ||||||| Sbjct: 1188 ggtgcacggtagcaacaag-aagttcgatactgatgtctctcttgaagtcatagcaatga 1246 Query: 62 gaacacctgggttcagtggagcagacttggcgaatcttctgaacgaggcagccatattag 121 |||||||||| || ||||||||||||||||| |||||||| || || ||||||||||||| Sbjct: 1247 gaacacctggctttagtggagcagacttggcaaatcttctaaatgaagcagccatattag 1306 Query: 122 caggccgacgtgggaggaccggaatttcctcaaaggagattgacgattcaattgatagga 181 | ||||||||||| |||| | ||||||||||||||||||||| ||||||||||| || | Sbjct: 1307 cgggccgacgtggtcggacagcaatttcctcaaaggagattgatgattcaattgacagaa 1366 Query: 182 tagtggctggtatggaagggactgtcatgacagatgggaagagcaaaagtcttgttgctt 241 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct: 1367 tagtggctggtatggaaggaactgtgatgacagatgggaagagcaaaagtcttgttgctt 1426 Query: 242 accacgaagtcgggcatgcagtttgcggaactttgacgcctggccacgaccccgtccaga 301 |||| ||||| ||||||||| |||| |||||||||||||||||||||||||| ||||| | Sbjct: 1427 accatgaagttgggcatgcaatttgtggaactttgacgcctggccacgaccctgtccaaa 1486 Query: 302 aggt 305 |||| Sbjct: 1487 aggt 1490
>dbj|AK064913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M12, full insert sequence Length = 2433 Score = 373 bits (188), Expect = e-100 Identities = 276/304 (90%), Gaps = 1/304 (0%) Strand = Plus / Plus Query: 2 ggtgcacggtagcaacaagnaagtttgatgccgatgtttctcttgaagtcattgcaatga 61 ||||||||||||||||||| ||||| ||| | ||||| |||||||||||||| ||||||| Sbjct: 1438 ggtgcacggtagcaacaag-aagttcgatactgatgtctctcttgaagtcatagcaatga 1496 Query: 62 gaacacctgggttcagtggagcagacttggcgaatcttctgaacgaggcagccatattag 121 |||||||||| || ||||||||||||||||| |||||||| || || ||||||||||||| Sbjct: 1497 gaacacctggctttagtggagcagacttggcaaatcttctaaatgaagcagccatattag 1556 Query: 122 caggccgacgtgggaggaccggaatttcctcaaaggagattgacgattcaattgatagga 181 | ||||||||||| |||| | ||||||||||||||||||||| ||||||||||| || | Sbjct: 1557 cgggccgacgtggtcggacagcaatttcctcaaaggagattgatgattcaattgacagaa 1616 Query: 182 tagtggctggtatggaagggactgtcatgacagatgggaagagcaaaagtcttgttgctt 241 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct: 1617 tagtggctggtatggaaggaactgtgatgacagatgggaagagcaaaagtcttgttgctt 1676 Query: 242 accacgaagtcgggcatgcagtttgcggaactttgacgcctggccacgaccccgtccaga 301 |||| ||||| ||||||||| |||| |||||||||||||||||||||||||| ||||| | Sbjct: 1677 accatgaagttgggcatgcaatttgtggaactttgacgcctggccacgaccctgtccaaa 1736 Query: 302 aggt 305 |||| Sbjct: 1737 aggt 1740
>dbj|AK060805.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-F12, full insert sequence Length = 2276 Score = 365 bits (184), Expect = 6e-98 Identities = 275/304 (90%), Gaps = 1/304 (0%) Strand = Plus / Plus Query: 2 ggtgcacggtagcaacaagnaagtttgatgccgatgtttctcttgaagtcattgcaatga 61 ||||||||||||||||||| ||||| ||| | ||||| |||||||||||||| ||||||| Sbjct: 1248 ggtgcacggtagcaacaag-aagttcgatactgatgtctctcttgaagtcatagcaatga 1306 Query: 62 gaacacctgggttcagtggagcagacttggcgaatcttctgaacgaggcagccatattag 121 |||||||||| || ||||||||||||||||| |||||||| || || ||||||||||||| Sbjct: 1307 gaacacctggctttagtggagcagacttggcaaatcttctaaatgaagcagccatattag 1366 Query: 122 caggccgacgtgggaggaccggaatttcctcaaaggagattgacgattcaattgatagga 181 | ||||||||||| |||| | ||||||||||||||||||||| ||||||||||| || | Sbjct: 1367 cgggccgacgtggtcggacagcaatttcctcaaaggagattgatgattcaattgacagaa 1426 Query: 182 tagtggctggtatggaagggactgtcatgacagatgggaagagcaaaagtcttgttgctt 241 ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| Sbjct: 1427 tagtggctggtatggaaggaactgtgatgacagatgggaagagcaaaagtcttgtcgctt 1486 Query: 242 accacgaagtcgggcatgcagtttgcggaactttgacgcctggccacgaccccgtccaga 301 |||| ||||| ||||||||| |||| |||||||||||||||||||||||||| ||||| | Sbjct: 1487 accatgaagttgggcatgcaatttgtggaactttgacgcctggccacgaccctgtccaaa 1546 Query: 302 aggt 305 |||| Sbjct: 1547 aggt 1550
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 319 bits (161), Expect = 3e-84 Identities = 240/265 (90%), Gaps = 1/265 (0%) Strand = Plus / Minus Query: 2 ggtgcacggtagcaacaagnaagtttgatgccgatgtttctcttgaagtcattgcaatga 61 ||||||||||||||||||| ||||| ||| | ||||| |||||||||||||| ||||||| Sbjct: 27342296 ggtgcacggtagcaacaag-aagttcgatactgatgtctctcttgaagtcatagcaatga 27342238 Query: 62 gaacacctgggttcagtggagcagacttggcgaatcttctgaacgaggcagccatattag 121 |||||||||| || ||||||||||||||||| |||||||| || || ||||||||||||| Sbjct: 27342237 gaacacctggctttagtggagcagacttggcaaatcttctaaatgaagcagccatattag 27342178 Query: 122 caggccgacgtgggaggaccggaatttcctcaaaggagattgacgattcaattgatagga 181 | ||||||||||| |||| | ||||||||||||||||||||| ||||||||||| || | Sbjct: 27342177 cgggccgacgtggtcggacagcaatttcctcaaaggagattgatgattcaattgacagaa 27342118 Query: 182 tagtggctggtatggaagggactgtcatgacagatgggaagagcaaaagtcttgttgctt 241 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct: 27342117 tagtggctggtatggaaggaactgtgatgacagatgggaagagcaaaagtcttgttgctt 27342058 Query: 242 accacgaagtcgggcatgcagtttg 266 |||| ||||| ||||||||| |||| Sbjct: 27342057 accatgaagttgggcatgcaatttg 27342033 Score = 58.0 bits (29), Expect = 2e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 269 gaactttgacgcctggccacgaccccgtccagaaggt 305 ||||||||||||||||||||||||| ||||| ||||| Sbjct: 27341930 gaactttgacgcctggccacgaccctgtccaaaaggt 27341894
>dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0686E06 Length = 150474 Score = 319 bits (161), Expect = 3e-84 Identities = 240/265 (90%), Gaps = 1/265 (0%) Strand = Plus / Minus Query: 2 ggtgcacggtagcaacaagnaagtttgatgccgatgtttctcttgaagtcattgcaatga 61 ||||||||||||||||||| ||||| ||| | ||||| |||||||||||||| ||||||| Sbjct: 85123 ggtgcacggtagcaacaag-aagttcgatactgatgtctctcttgaagtcatagcaatga 85065 Query: 62 gaacacctgggttcagtggagcagacttggcgaatcttctgaacgaggcagccatattag 121 |||||||||| || ||||||||||||||||| |||||||| || || ||||||||||||| Sbjct: 85064 gaacacctggctttagtggagcagacttggcaaatcttctaaatgaagcagccatattag 85005 Query: 122 caggccgacgtgggaggaccggaatttcctcaaaggagattgacgattcaattgatagga 181 | ||||||||||| |||| | ||||||||||||||||||||| ||||||||||| || | Sbjct: 85004 cgggccgacgtggtcggacagcaatttcctcaaaggagattgatgattcaattgacagaa 84945 Query: 182 tagtggctggtatggaagggactgtcatgacagatgggaagagcaaaagtcttgttgctt 241 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct: 84944 tagtggctggtatggaaggaactgtgatgacagatgggaagagcaaaagtcttgttgctt 84885 Query: 242 accacgaagtcgggcatgcagtttg 266 |||| ||||| ||||||||| |||| Sbjct: 84884 accatgaagttgggcatgcaatttg 84860 Score = 58.0 bits (29), Expect = 2e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 269 gaactttgacgcctggccacgaccccgtccagaaggt 305 ||||||||||||||||||||||||| ||||| ||||| Sbjct: 84757 gaactttgacgcctggccacgaccctgtccaaaaggt 84721
>gb|AY105892.1| Zea mays PCO103778 mRNA sequence Length = 2203 Score = 285 bits (144), Expect = 4e-74 Identities = 264/303 (87%), Gaps = 1/303 (0%) Strand = Plus / Plus Query: 3 gtgcacggtagcaacaagnaagtttgatgccgatgtttctcttgaagtcattgcaatgag 62 ||||| ||| |||||||| || |||||| | ||||||||||| || ||||| |||||||| Sbjct: 1093 gtgcatggtggcaacaagaaa-tttgattctgatgtttctctcgatgtcatagcaatgag 1151 Query: 63 aacacctgggttcagtggagcagacttggcgaatcttctgaacgaggcagccatattagc 122 |||||||||||||||||||||||||||||| || |||||||| || |||||||| | || Sbjct: 1152 aacacctgggttcagtggagcagacttggcaaaccttctgaatgaagcagccattctggc 1211 Query: 123 aggccgacgtgggaggaccggaatttcctcaaaggagattgacgattcaattgataggat 182 || || || |||||||| | |||||| ||||| ||||| || ||||| ||||| || || Sbjct: 1212 tggacggcgggggaggacagcaatttcttcaaaagagatagatgattctattgacagaat 1271 Query: 183 agtggctggtatggaagggactgtcatgacagatgggaagagcaaaagtcttgttgctta 242 ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct: 1272 tgtggctggtatggaagggactgtgatgacagacgggaagagcaaaagtcttgttgctta 1331 Query: 243 ccacgaagtcgggcatgcagtttgcggaactttgacgcctggccacgaccccgtccagaa 302 ||| ||||||||||||||| |||||||||||||||| |||||||| || || ||||| || Sbjct: 1332 ccatgaagtcgggcatgcaatttgcggaactttgacacctggccatgatcctgtccaaaa 1391 Query: 303 ggt 305 ||| Sbjct: 1392 ggt 1394
>dbj|AB236793.1| Trifolium pratense RNA for putative zinc dependent protease, complete cds, clone: C1867 Length = 2414 Score = 123 bits (62), Expect = 4e-25 Identities = 215/266 (80%) Strand = Plus / Plus Query: 22 aagtttgatgccgatgtttctcttgaagtcattgcaatgagaacacctgggttcagtgga 81 ||||||||| | ||||||||||||||| | ||||||||||||||||||| || || ||| Sbjct: 1284 aagtttgattcggatgtttctcttgaaatagttgcaatgagaacacctggttttagcgga 1343 Query: 82 gcagacttggcgaatcttctgaacgaggcagccatattagcaggccgacgtgggaggacc 141 || || | || ||||| |||| || || || |||||||| || || | || | | | Sbjct: 1344 gctgatcttgcaaatctcttgaatgaagctgctatattagctggtcggagaggaaagtca 1403 Query: 142 ggaatttcctcaaaggagattgacgattcaattgataggatagtggctggtatggaaggg 201 || ||||| || || |||||||| ||||| ||||||||||| || ||||| |||||||| Sbjct: 1404 ggcatttcatctaaagagattgatgattctattgataggattgtcgctggaatggaagga 1463 Query: 202 actgtcatgacagatgggaagagcaaaagtcttgttgcttaccacgaagtcgggcatgca 261 || | ||||| |||||||||||||||||| | || || || || |||||||||||||| Sbjct: 1464 acattaatgactgatgggaagagcaaaagtttagtggcatatcatgaagtcgggcatgcc 1523 Query: 262 gtttgcggaactttgacgcctggcca 287 |||||||||||||||| |||||||| Sbjct: 1524 atttgcggaactttgactcctggcca 1549
>ref|NM_100523.3| Arabidopsis thaliana FTSH8; ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding AT1G06430 (FTSH8) mRNA, complete cds Length = 2251 Score = 121 bits (61), Expect = 1e-24 Identities = 184/225 (81%) Strand = Plus / Plus Query: 36 tgtttctcttgaagtcattgcaatgagaacacctgggttcagtggagcagacttggcgaa 95 |||||| |||||||| || || |||||||||||||| || || ||||| || | || || Sbjct: 1270 tgtttcacttgaagtaatagccatgagaacacctggatttagcggagctgatcttgcaaa 1329 Query: 96 tcttctgaacgaggcagccatattagcaggccgacgtgggaggaccggaatttcctcaaa 155 || |||||||||| |||||||| || ||||| ||||| | ||| | ||| || ||||| Sbjct: 1330 cctcttgaacgaggctgccatattggccggccgccgtggaaagactgcaatatcatcaaa 1389 Query: 156 ggagattgacgattcaattgataggatagtggctggtatggaagggactgtcatgacaga 215 |||||||| || |||||||| || || || ||||| |||||||| || ||||||||||| Sbjct: 1390 agagattgatgactcaattgacagaattgtagctggcatggaaggaacagtcatgacaga 1449 Query: 216 tgggaagagcaaaagtcttgttgcttaccacgaagtcgggcatgc 260 ||||||||||||||| | ||||||||||| ||||| || ||||| Sbjct: 1450 tgggaagagcaaaagcttggttgcttaccatgaagttggccatgc 1494
>gb|AY045951.1| Arabidopsis thaliana putative FtsH protease (At1g06430) mRNA, partial cds Length = 1630 Score = 121 bits (61), Expect = 1e-24 Identities = 184/225 (81%) Strand = Plus / Plus Query: 36 tgtttctcttgaagtcattgcaatgagaacacctgggttcagtggagcagacttggcgaa 95 |||||| |||||||| || || |||||||||||||| || || ||||| || | || || Sbjct: 682 tgtttcacttgaagtaatagccatgagaacacctggatttagcggagctgatcttgcaaa 741 Query: 96 tcttctgaacgaggcagccatattagcaggccgacgtgggaggaccggaatttcctcaaa 155 || |||||||||| |||||||| || ||||| ||||| | ||| | ||| || ||||| Sbjct: 742 cctcttgaacgaggctgccatattggccggccgccgtggaaagactgcaatatcatcaaa 801 Query: 156 ggagattgacgattcaattgataggatagtggctggtatggaagggactgtcatgacaga 215 |||||||| || |||||||| || || || ||||| |||||||| || ||||||||||| Sbjct: 802 agagattgatgactcaattgacagaattgtagctggcatggaaggaacagtcatgacaga 861 Query: 216 tgggaagagcaaaagtcttgttgcttaccacgaagtcgggcatgc 260 ||||||||||||||| | ||||||||||| ||||| || ||||| Sbjct: 862 tgggaagagcaaaagcttggttgcttaccatgaagttggccatgc 906
>gb|AF419565.1|AF419565 Arabidopsis thaliana At1g06430/F12K11_24 mRNA, complete cds Length = 2228 Score = 121 bits (61), Expect = 1e-24 Identities = 184/225 (81%) Strand = Plus / Plus Query: 36 tgtttctcttgaagtcattgcaatgagaacacctgggttcagtggagcagacttggcgaa 95 |||||| |||||||| || || |||||||||||||| || || ||||| || | || || Sbjct: 1270 tgtttcacttgaagtaatagccatgagaacacctggatttagcggagctgatcttgcaaa 1329 Query: 96 tcttctgaacgaggcagccatattagcaggccgacgtgggaggaccggaatttcctcaaa 155 || |||||||||| |||||||| || ||||| ||||| | ||| | ||| || ||||| Sbjct: 1330 cctcttgaacgaggctgccatattggccggccgccgtggaaagactgcaatatcatcaaa 1389 Query: 156 ggagattgacgattcaattgataggatagtggctggtatggaagggactgtcatgacaga 215 |||||||| || |||||||| || || || ||||| |||||||| || ||||||||||| Sbjct: 1390 agagattgatgactcaattgacagaattgtagctggcatggaaggaacagtcatgacaga 1449 Query: 216 tgggaagagcaaaagtcttgttgcttaccacgaagtcgggcatgc 260 ||||||||||||||| | ||||||||||| ||||| || ||||| Sbjct: 1450 tgggaagagcaaaagcttggttgcttaccatgaagttggccatgc 1494
>gb|AC068143.4|T2D23 Sequence of BAC T2D23 from Arabidopsis thaliana chromosome 1, complete sequence Length = 41039 Score = 121 bits (61), Expect = 1e-24 Identities = 184/225 (81%) Strand = Plus / Minus Query: 36 tgtttctcttgaagtcattgcaatgagaacacctgggttcagtggagcagacttggcgaa 95 |||||| |||||||| || || |||||||||||||| || || ||||| || | || || Sbjct: 39234 tgtttcacttgaagtaatagccatgagaacacctggatttagcggagctgatcttgcaaa 39175 Query: 96 tcttctgaacgaggcagccatattagcaggccgacgtgggaggaccggaatttcctcaaa 155 || |||||||||| |||||||| || ||||| ||||| | ||| | ||| || ||||| Sbjct: 39174 cctcttgaacgaggctgccatattggccggccgccgtggaaagactgcaatatcatcaaa 39115 Query: 156 ggagattgacgattcaattgataggatagtggctggtatggaagggactgtcatgacaga 215 |||||||| || |||||||| || || || ||||| |||||||| || ||||||||||| Sbjct: 39114 agagattgatgactcaattgacagaattgtagctggcatggaaggaacagtcatgacaga 39055 Query: 216 tgggaagagcaaaagtcttgttgcttaccacgaagtcgggcatgc 260 ||||||||||||||| | ||||||||||| ||||| || ||||| Sbjct: 39054 tgggaagagcaaaagcttggttgcttaccatgaagttggccatgc 39010
>gb|AC007592.4|AC007592 Genomic sequence for Arabidopsis thaliana BAC F12K11 from chromosome I, complete sequence Length = 93724 Score = 121 bits (61), Expect = 1e-24 Identities = 184/225 (81%) Strand = Plus / Plus Query: 36 tgtttctcttgaagtcattgcaatgagaacacctgggttcagtggagcagacttggcgaa 95 |||||| |||||||| || || |||||||||||||| || || ||||| || | || || Sbjct: 92807 tgtttcacttgaagtaatagccatgagaacacctggatttagcggagctgatcttgcaaa 92866 Query: 96 tcttctgaacgaggcagccatattagcaggccgacgtgggaggaccggaatttcctcaaa 155 || |||||||||| |||||||| || ||||| ||||| | ||| | ||| || ||||| Sbjct: 92867 cctcttgaacgaggctgccatattggccggccgccgtggaaagactgcaatatcatcaaa 92926 Query: 156 ggagattgacgattcaattgataggatagtggctggtatggaagggactgtcatgacaga 215 |||||||| || |||||||| || || || ||||| |||||||| || ||||||||||| Sbjct: 92927 agagattgatgactcaattgacagaattgtagctggcatggaaggaacagtcatgacaga 92986 Query: 216 tgggaagagcaaaagtcttgttgcttaccacgaagtcgggcatgc 260 ||||||||||||||| | ||||||||||| ||||| || ||||| Sbjct: 92987 tgggaagagcaaaagcttggttgcttaccatgaagttggccatgc 93031
>gb|BT003813.1| Arabidopsis thaliana clone C104937 putative FtsH protease (At1g06430) mRNA, complete cds Length = 2089 Score = 121 bits (61), Expect = 1e-24 Identities = 184/225 (81%) Strand = Plus / Plus Query: 36 tgtttctcttgaagtcattgcaatgagaacacctgggttcagtggagcagacttggcgaa 95 |||||| |||||||| || || |||||||||||||| || || ||||| || | || || Sbjct: 1233 tgtttcacttgaagtaatagccatgagaacacctggatttagcggagctgatcttgcaaa 1292 Query: 96 tcttctgaacgaggcagccatattagcaggccgacgtgggaggaccggaatttcctcaaa 155 || |||||||||| |||||||| || ||||| ||||| | ||| | ||| || ||||| Sbjct: 1293 cctcttgaacgaggctgccatattggccggccgccgtggaaagactgcaatatcatcaaa 1352 Query: 156 ggagattgacgattcaattgataggatagtggctggtatggaagggactgtcatgacaga 215 |||||||| || |||||||| || || || ||||| |||||||| || ||||||||||| Sbjct: 1353 agagattgatgactcaattgacagaattgtagctggcatggaaggaacagtcatgacaga 1412 Query: 216 tgggaagagcaaaagtcttgttgcttaccacgaagtcgggcatgc 260 ||||||||||||||| | ||||||||||| ||||| || ||||| Sbjct: 1413 tgggaagagcaaaagcttggttgcttaccatgaagttggccatgc 1457
>gb|BT002649.1| Arabidopsis thaliana At1g06430/F12K11_24 gene, complete cds Length = 2058 Score = 121 bits (61), Expect = 1e-24 Identities = 184/225 (81%) Strand = Plus / Plus Query: 36 tgtttctcttgaagtcattgcaatgagaacacctgggttcagtggagcagacttggcgaa 95 |||||| |||||||| || || |||||||||||||| || || ||||| || | || || Sbjct: 1233 tgtttcacttgaagtaatagccatgagaacacctggatttagcggagctgatcttgcaaa 1292 Query: 96 tcttctgaacgaggcagccatattagcaggccgacgtgggaggaccggaatttcctcaaa 155 || |||||||||| |||||||| || ||||| ||||| | ||| | ||| || ||||| Sbjct: 1293 cctcttgaacgaggctgccatattggccggccgccgtggaaagactgcaatatcatcaaa 1352 Query: 156 ggagattgacgattcaattgataggatagtggctggtatggaagggactgtcatgacaga 215 |||||||| || |||||||| || || || ||||| |||||||| || ||||||||||| Sbjct: 1353 agagattgatgactcaattgacagaattgtagctggcatggaaggaacagtcatgacaga 1412 Query: 216 tgggaagagcaaaagtcttgttgcttaccacgaagtcgggcatgc 260 ||||||||||||||| | ||||||||||| ||||| || ||||| Sbjct: 1413 tgggaagagcaaaagcttggttgcttaccatgaagttggccatgc 1457
>dbj|AB236774.1| Trifolium pratense RNA for putative zinc dependent protease, complete cds, clone: C1597 Length = 2290 Score = 117 bits (59), Expect = 2e-23 Identities = 212/263 (80%) Strand = Plus / Plus Query: 25 tttgatgccgatgtttctcttgaagtcattgcaatgagaacacctgggttcagtggagca 84 ||||| || |||||||||||||| || ||||||||||||||||||| || |||||||| Sbjct: 1265 tttgacgctgatgtttctcttgaggtagttgcaatgagaacacctggctttagtggagct 1324 Query: 85 gacttggcgaatcttctgaacgaggcagccatattagcaggccgacgtgggaggaccgga 144 || | || || || |||| || || || |||||||| || || ||||| | | | | Sbjct: 1325 gatcttgcaaacctcttgaatgaagctgctatattagctggtcggcgtggaaaggtggaa 1384 Query: 145 atttcctcaaaggagattgacgattcaattgataggatagtggctggtatggaagggact 204 ||||| ||||| |||||||| ||||| ||||||||||| || ||||| |||||||| || Sbjct: 1385 atttcatcaaaagagattgatgattctattgataggattgtagctggaatggaaggaaca 1444 Query: 205 gtcatgacagatgggaagagcaaaagtcttgttgcttaccacgaagtcgggcatgcagtt 264 || ||||||||||| |||||||||| | | || || || || ||||| |||||||| || Sbjct: 1445 gtgatgacagatggaaagagcaaaaatttagtggcatatcatgaagttgggcatgccatt 1504 Query: 265 tgcggaactttgacgcctggcca 287 || ||||||||||| |||||||| Sbjct: 1505 tgtggaactttgactcctggcca 1527
>gb|AF117339.1|AF117339 Nicotiana tabacum FtsH-like protein Pftf precursor (Pftf) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 2346 Score = 111 bits (56), Expect = 1e-21 Identities = 92/104 (88%) Strand = Plus / Plus Query: 157 gagattgacgattcaattgataggatagtggctggtatggaagggactgtcatgacagat 216 |||||||| |||||||||||||||||||||||||| |||||||| || |||||||| ||| Sbjct: 1465 gagattgatgattcaattgataggatagtggctggaatggaaggaacagtcatgactgat 1524 Query: 217 gggaagagcaaaagtcttgttgcttaccacgaagtcgggcatgc 260 || |||||||| ||||| || || ||||||||||| || ||||| Sbjct: 1525 ggcaagagcaagagtctggtggcataccacgaagttggacatgc 1568 Score = 44.1 bits (22), Expect = 0.26 Identities = 62/74 (83%), Gaps = 1/74 (1%) Strand = Plus / Plus Query: 13 gcaacaagnaagtttgatgccgatgtttctcttgaagtcattgcaatgagaacacctggg 72 |||||||| ||||| ||| | ||||||||||||||||| || || ||||| ||||| || Sbjct: 1322 gcaacaag-aagttcgattctgatgtttctcttgaagttatagccatgaggacacccggt 1380 Query: 73 ttcagtggagcaga 86 || ||||| ||||| Sbjct: 1381 tttagtggtgcaga 1394
>gb|AF315589.2| Petunia x hybrida cv. Dazzler CDC48 cell division-like protein gene, partial sequence Length = 1035 Score = 97.6 bits (49), Expect = 2e-17 Identities = 70/77 (90%) Strand = Plus / Plus Query: 157 gagattgacgattcaattgataggatagtggctggtatggaagggactgtcatgacagat 216 |||||||| |||||||||||||||||||||||||| |||||||| || |||||||| ||| Sbjct: 169 gagattgatgattcaattgataggatagtggctggaatggaaggaacagtcatgactgat 228 Query: 217 gggaagagcaaaagtct 233 || |||||||| ||||| Sbjct: 229 ggcaagagcaagagtct 245 Score = 67.9 bits (34), Expect = 2e-08 Identities = 65/74 (87%), Gaps = 1/74 (1%) Strand = Plus / Plus Query: 13 gcaacaagnaagtttgatgccgatgtttctcttgaagtcattgcaatgagaacacctggg 72 |||||||| ||||| ||| | ||||||||||||||||| || || ||||| |||||||| Sbjct: 26 gcaacaag-aagttcgattctgatgtttctcttgaagttatagccatgaggacacctggt 84 Query: 73 ttcagtggagcaga 86 |||||||||||||| Sbjct: 85 ttcagtggagcaga 98
>emb|AJ012165.1|CAN012165 Capsicum annuum mRNA for chloroplast protease (CACP)from the AAA atpase family Length = 2233 Score = 95.6 bits (48), Expect = 8e-17 Identities = 90/104 (86%) Strand = Plus / Plus Query: 157 gagattgacgattcaattgataggatagtggctggtatggaagggactgtcatgacagat 216 |||||||| ||||||||||| |||||||||||||| |||||||| || || ||||| ||| Sbjct: 1412 gagattgatgattcaattgacaggatagtggctggaatggaaggaacagtaatgactgat 1471 Query: 217 gggaagagcaaaagtcttgttgcttaccacgaagtcgggcatgc 260 || |||||||| |||||||| || || |||||||| || ||||| Sbjct: 1472 ggcaagagcaagagtcttgtggcatatcacgaagttggacatgc 1515 Score = 67.9 bits (34), Expect = 2e-08 Identities = 65/74 (87%), Gaps = 1/74 (1%) Strand = Plus / Plus Query: 13 gcaacaagnaagtttgatgccgatgtttctcttgaagtcattgcaatgagaacacctggg 72 |||||||| ||||| ||| | ||||| ||||||||||| ||||| ||||| |||||||| Sbjct: 1269 gcaacaag-aagttcgattcagatgtgtctcttgaagttattgccatgaggacacctggc 1327 Query: 73 ttcagtggagcaga 86 |||||||||||||| Sbjct: 1328 ttcagtggagcaga 1341
>emb|X80755.1|CAPFTF C.annuum mRNA for PFTF (plastid fusion and/or translation factor Length = 2197 Score = 95.6 bits (48), Expect = 8e-17 Identities = 90/104 (86%) Strand = Plus / Plus Query: 157 gagattgacgattcaattgataggatagtggctggtatggaagggactgtcatgacagat 216 |||||||| ||||||||||| |||||||||||||| |||||||| || || ||||| ||| Sbjct: 1390 gagattgatgattcaattgacaggatagtggctggaatggaaggaacagtaatgactgat 1449 Query: 217 gggaagagcaaaagtcttgttgcttaccacgaagtcgggcatgc 260 || |||||||| |||||||| || || |||||||| || ||||| Sbjct: 1450 ggcaagagcaagagtcttgtggcatatcacgaagttggacatgc 1493 Score = 67.9 bits (34), Expect = 2e-08 Identities = 65/74 (87%), Gaps = 1/74 (1%) Strand = Plus / Plus Query: 13 gcaacaagnaagtttgatgccgatgtttctcttgaagtcattgcaatgagaacacctggg 72 |||||||| ||||| ||| | ||||| ||||||||||| ||||| ||||| |||||||| Sbjct: 1247 gcaacaag-aagttcgattcagatgtgtctcttgaagttattgccatgaggacacctggc 1305 Query: 73 ttcagtggagcaga 86 |||||||||||||| Sbjct: 1306 ttcagtggagcaga 1319
>ref|NM_179825.1| Arabidopsis thaliana VAR2 (VARIEGATED 2); ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding AT2G30950 (VAR2) mRNA, complete cds Length = 2333 Score = 67.9 bits (34), Expect = 2e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 157 gagattgacgattcaattgataggatagtggctggtatggaagggactgtcatgacagat 216 |||||||| || || |||||||| || || ||||| |||||||| || || ||||| ||| Sbjct: 1461 gagattgatgactccattgatagaatcgttgctggcatggaaggaacagtgatgaccgat 1520 Query: 217 gggaagagcaaaagtcttgttgcttaccacgaagtcgggcatgcagtttgcggaactttg 276 || ||||||||||| | || |||||||| ||||| || |||||||| || ||||| ||| Sbjct: 1521 ggcaagagcaaaagcttggtagcttaccatgaagttggtcatgcagtgtgtggaacattg 1580 Query: 277 ac 278 || Sbjct: 1581 ac 1582 Score = 50.1 bits (25), Expect = 0.004 Identities = 46/53 (86%) Strand = Plus / Plus Query: 34 gatgtttctcttgaagtcattgcaatgagaacacctgggttcagtggagcaga 86 |||||||| |||||| | || ||||||||||||||||| || || |||||||| Sbjct: 1338 gatgtttcacttgaaataatagcaatgagaacacctggatttagcggagcaga 1390
>gb|AY093791.1| Arabidopsis thaliana At2g30950/F7F1.16 mRNA, complete cds Length = 1020 Score = 67.9 bits (34), Expect = 2e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 157 gagattgacgattcaattgataggatagtggctggtatggaagggactgtcatgacagat 216 |||||||| || || |||||||| || || ||||| |||||||| || || ||||| ||| Sbjct: 307 gagattgatgactccattgatagaatcgttgctggcatggaaggaacagtgatgaccgat 366 Query: 217 gggaagagcaaaagtcttgttgcttaccacgaagtcgggcatgcagtttgcggaactttg 276 || ||||||||||| | || |||||||| ||||| || |||||||| || ||||| ||| Sbjct: 367 ggcaagagcaaaagcttggtagcttaccatgaagttggtcatgcagtgtgtggaacattg 426 Query: 277 ac 278 || Sbjct: 427 ac 428 Score = 50.1 bits (25), Expect = 0.004 Identities = 46/53 (86%) Strand = Plus / Plus Query: 34 gatgtttctcttgaagtcattgcaatgagaacacctgggttcagtggagcaga 86 |||||||| |||||| | || ||||||||||||||||| || || |||||||| Sbjct: 184 gatgtttcacttgaaataatagcaatgagaacacctggatttagcggagcaga 236
>gb|AY045599.1| Arabidopsis thaliana At2g30950/F7F1.16 mRNA, complete cds Length = 1307 Score = 67.9 bits (34), Expect = 2e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 157 gagattgacgattcaattgataggatagtggctggtatggaagggactgtcatgacagat 216 |||||||| || || |||||||| || || ||||| |||||||| || || ||||| ||| Sbjct: 477 gagattgatgactccattgatagaatcgttgctggcatggaaggaacagtgatgaccgat 536 Query: 217 gggaagagcaaaagtcttgttgcttaccacgaagtcgggcatgcagtttgcggaactttg 276 || ||||||||||| | || |||||||| ||||| || |||||||| || ||||| ||| Sbjct: 537 ggcaagagcaaaagcttggtagcttaccatgaagttggtcatgcagtgtgtggaacattg 596 Query: 277 ac 278 || Sbjct: 597 ac 598 Score = 50.1 bits (25), Expect = 0.004 Identities = 46/53 (86%) Strand = Plus / Plus Query: 34 gatgtttctcttgaagtcattgcaatgagaacacctgggttcagtggagcaga 86 |||||||| |||||| | || ||||||||||||||||| || || |||||||| Sbjct: 354 gatgtttcacttgaaataatagcaatgagaacacctggatttagcggagcaga 406
>gb|AF135189.1|AF135189 Arabidopsis thaliana zinc dependent protease (VAR2) mRNA, complete cds; nuclear gene for chloroplast product Length = 2271 Score = 67.9 bits (34), Expect = 2e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 157 gagattgacgattcaattgataggatagtggctggtatggaagggactgtcatgacagat 216 |||||||| || || |||||||| || || ||||| |||||||| || || ||||| ||| Sbjct: 1429 gagattgatgactccattgatagaatcgttgctggcatggaaggaacagtgatgaccgat 1488 Query: 217 gggaagagcaaaagtcttgttgcttaccacgaagtcgggcatgcagtttgcggaactttg 276 || ||||||||||| | || |||||||| ||||| || |||||||| || ||||| ||| Sbjct: 1489 ggcaagagcaaaagcttggtagcttaccatgaagttggtcatgcagtgtgtggaacattg 1548 Query: 277 ac 278 || Sbjct: 1549 ac 1550 Score = 50.1 bits (25), Expect = 0.004 Identities = 46/53 (86%) Strand = Plus / Plus Query: 34 gatgtttctcttgaagtcattgcaatgagaacacctgggttcagtggagcaga 86 |||||||| |||||| | || ||||||||||||||||| || || |||||||| Sbjct: 1306 gatgtttcacttgaaataatagcaatgagaacacctggatttagcggagcaga 1358
>gb|AC004669.3| Arabidopsis thaliana chromosome 2 clone F7F1 map m283, complete sequence Length = 89779 Score = 61.9 bits (31), Expect = 1e-06 Identities = 88/107 (82%) Strand = Plus / Plus Query: 157 gagattgacgattcaattgataggatagtggctggtatggaagggactgtcatgacagat 216 |||||||| || || |||||||| || || ||||| |||||||| || || ||||| ||| Sbjct: 50609 gagattgatgactccattgatagaatcgttgctggcatggaaggaacagtgatgaccgat 50668 Query: 217 gggaagagcaaaagtcttgttgcttaccacgaagtcgggcatgcagt 263 || ||||||||||| | || |||||||| ||||| || |||||||| Sbjct: 50669 ggcaagagcaaaagcttggtagcttaccatgaagttggtcatgcagt 50715 Score = 50.1 bits (25), Expect = 0.004 Identities = 46/53 (86%) Strand = Plus / Plus Query: 34 gatgtttctcttgaagtcattgcaatgagaacacctgggttcagtggagcaga 86 |||||||| |||||| | || ||||||||||||||||| || || |||||||| Sbjct: 50486 gatgtttcacttgaaataatagcaatgagaacacctggatttagcggagcaga 50538
>dbj|AB217916.1| Lycopersicon esculentum LeftsH6 mRNA for FtsH protease, complete cds Length = 2213 Score = 46.1 bits (23), Expect = 0.067 Identities = 62/75 (82%) Strand = Plus / Plus Query: 149 cctcaaaggagattgacgattcaattgataggatagtggctggtatggaagggactgtca 208 ||||||| ||||| || ||||| || ||||| || || ||||| |||||||| ||| || Sbjct: 1385 cctcaaaagagatagatgattccatcgatagaattgtcgctggaatggaaggaactacca 1444 Query: 209 tgacagatgggaaga 223 |||||||||| |||| Sbjct: 1445 tgacagatggaaaga 1459 Score = 46.1 bits (23), Expect = 0.067 Identities = 32/35 (91%) Strand = Plus / Plus Query: 52 attgcaatgagaacacctgggttcagtggagcaga 86 ||||||||||||||||| || |||||||| ||||| Sbjct: 1288 attgcaatgagaacaccaggattcagtggtgcaga 1322
>gb|AC092274.2| Homo sapiens chromosome 5 clone CTC-537D8, complete sequence Length = 148579 Score = 44.1 bits (22), Expect = 0.26 Identities = 28/30 (93%) Strand = Plus / Plus Query: 157 gagattgacgattcaattgataggatagtg 186 ||||||||| ||| |||||||||||||||| Sbjct: 112120 gagattgaccatttaattgataggatagtg 112149
>gb|AC017092.4|AC017092 Homo sapiens BAC clone RP11-510D22 from 5, complete sequence Length = 180072 Score = 44.1 bits (22), Expect = 0.26 Identities = 28/30 (93%) Strand = Plus / Minus Query: 157 gagattgacgattcaattgataggatagtg 186 ||||||||| ||| |||||||||||||||| Sbjct: 166334 gagattgaccatttaattgataggatagtg 166305
>ref|XM_467284.1| Oryza sativa (japonica cultivar-group), mRNA Length = 369 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 tcgggcatgcagtttgcgga 270 |||||||||||||||||||| Sbjct: 333 tcgggcatgcagtttgcgga 314
>gb|AC137986.27| Medicago truncatula clone mth2-7g6, complete sequence Length = 128361 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 tcattgcaatgagaacacct 69 |||||||||||||||||||| Sbjct: 65022 tcattgcaatgagaacacct 65041
>emb|CR293504.11| Zebrafish DNA sequence from clone CH211-147G3 in linkage group 10, complete sequence Length = 165086 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 caaaagtcttgttgcttacc 244 |||||||||||||||||||| Sbjct: 73314 caaaagtcttgttgcttacc 73333
>emb|BX957222.1| Methanococcus maripaludis S2 complete genome; segment 4/5 Length = 349607 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 agattgacgattcaattgat 177 |||||||||||||||||||| Sbjct: 11531 agattgacgattcaattgat 11550
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 tcgggcatgcagtttgcgga 270 |||||||||||||||||||| Sbjct: 28669448 tcgggcatgcagtttgcgga 28669467
>dbj|AP005868.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0666E12 Length = 47765 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 tcgggcatgcagtttgcgga 270 |||||||||||||||||||| Sbjct: 17461 tcgggcatgcagtttgcgga 17480
>dbj|AP005859.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1053A04 Length = 144321 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 tcgggcatgcagtttgcgga 270 |||||||||||||||||||| Sbjct: 133461 tcgggcatgcagtttgcgga 133480
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome Length = 2593857 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 233 ttgttgcttaccacgaagtcgggcatgc 260 |||| ||||||||||||||||| ||||| Sbjct: 528910 ttgtcgcttaccacgaagtcggtcatgc 528937
>emb|AL805903.12| Mouse DNA sequence from clone RP23-464N23 on chromosome 4, complete sequence Length = 136895 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 tgagaacacctgggttcagt 78 |||||||||||||||||||| Sbjct: 101750 tgagaacacctgggttcagt 101731 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,110,730 Number of Sequences: 3902068 Number of extensions: 2110730 Number of successful extensions: 34868 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34780 Number of HSP's gapped (non-prelim): 75 length of query: 312 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 290 effective length of database: 17,147,199,772 effective search space: 4972687933880 effective search space used: 4972687933880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)