ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2f16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC108875.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1123_C08, complete sequence Length = 132017 Score = 222 bits (112), Expect = 1e-54 Identities = 282/338 (83%), Gaps = 3/338 (0%) Strand = Plus / Minus Query: 300 cagtcagtgaatgaccccaacggtgtactcaaatcctcatggaattttg---agaacgtt 356 |||||||||| || ||||| ||| |||||||||||||||||| ||||| | |||| Sbjct: 30051 cagtcagtgaccgatcccaatggtatactcaaatcctcatggagttttgtcaacaacggc 29992 Query: 357 actgttggtttcatatgccgatttaccggtgtggaatgttggcacccggatgaggaccgg 416 || ||||| ||| ||| |||||| || |||||||||||||| || |||||| |||| Sbjct: 29991 acccctggttacatctgcaaatttactggggtggaatgttggcatccagatgagaaccga 29932 Query: 417 gttctttctttgcgcctaggtaaccttggtctccagggtccatttcctcgtggtcttcag 476 |||||||||||||| || || ||||||||||| ||||||||||||||| || |||||| Sbjct: 29931 gttctttctttgcgtctcggcaaccttggtcttcagggtccatttcctgcaggccttcag 29872 Query: 477 aattgtagcagtatgactgggctggatctgtcaaacaacaacttttcaggacttatccct 536 || |||| |||||||||||||| |||||||| | ||||||||| ||||||| || ||| Sbjct: 29871 aactgtactagtatgactgggctagatctgtcgagtaacaactttacaggactcattcct 29812 Query: 537 caagacatctcccgggaaataccatacttaacatcattggacctctcctacaatagtttt 596 || |||||||||| | ||||||||||||| |||||| ||||||||||||||||||| ||| Sbjct: 29811 caggacatctcccagcaaataccatacttgacatcactggacctctcctacaataggttt 29752 Query: 597 tctggcgccatcccacaaaatatatcaaatatgacata 634 || ||| |||||| |||||| |||||||||||||| Sbjct: 29751 tcaggccaaatcccagtaaatatttcaaatatgacata 29714 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 208 attatgctcctctgagggttattctt 233 ||||||||||||||||| |||||||| Sbjct: 30143 attatgctcctctgaggcttattctt 30118
>gb|AC130607.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0017D10, complete sequence Length = 149870 Score = 222 bits (112), Expect = 1e-54 Identities = 282/338 (83%), Gaps = 3/338 (0%) Strand = Plus / Minus Query: 300 cagtcagtgaatgaccccaacggtgtactcaaatcctcatggaattttg---agaacgtt 356 |||||||||| || ||||| ||| |||||||||||||||||| ||||| | |||| Sbjct: 139715 cagtcagtgaccgatcccaatggtatactcaaatcctcatggagttttgtcaacaacggc 139656 Query: 357 actgttggtttcatatgccgatttaccggtgtggaatgttggcacccggatgaggaccgg 416 || ||||| ||| ||| |||||| || |||||||||||||| || |||||| |||| Sbjct: 139655 acccctggttacatctgcaaatttactggggtggaatgttggcatccagatgagaaccga 139596 Query: 417 gttctttctttgcgcctaggtaaccttggtctccagggtccatttcctcgtggtcttcag 476 |||||||||||||| || || ||||||||||| ||||||||||||||| || |||||| Sbjct: 139595 gttctttctttgcgtctcggcaaccttggtcttcagggtccatttcctgcaggccttcag 139536 Query: 477 aattgtagcagtatgactgggctggatctgtcaaacaacaacttttcaggacttatccct 536 || |||| |||||||||||||| |||||||| | ||||||||| ||||||| || ||| Sbjct: 139535 aactgtactagtatgactgggctagatctgtcgagtaacaactttacaggactcattcct 139476 Query: 537 caagacatctcccgggaaataccatacttaacatcattggacctctcctacaatagtttt 596 || |||||||||| | ||||||||||||| |||||| ||||||||||||||||||| ||| Sbjct: 139475 caggacatctcccagcaaataccatacttgacatcactggacctctcctacaataggttt 139416 Query: 597 tctggcgccatcccacaaaatatatcaaatatgacata 634 || ||| |||||| |||||| |||||||||||||| Sbjct: 139415 tcaggccaaatcccagtaaatatttcaaatatgacata 139378 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 208 attatgctcctctgagggttattctt 233 ||||||||||||||||| |||||||| Sbjct: 139807 attatgctcctctgaggcttattctt 139782
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 222 bits (112), Expect = 1e-54 Identities = 282/338 (83%), Gaps = 3/338 (0%) Strand = Plus / Minus Query: 300 cagtcagtgaatgaccccaacggtgtactcaaatcctcatggaattttg---agaacgtt 356 |||||||||| || ||||| ||| |||||||||||||||||| ||||| | |||| Sbjct: 20141390 cagtcagtgaccgatcccaatggtatactcaaatcctcatggagttttgtcaacaacggc 20141331 Query: 357 actgttggtttcatatgccgatttaccggtgtggaatgttggcacccggatgaggaccgg 416 || ||||| ||| ||| |||||| || |||||||||||||| || |||||| |||| Sbjct: 20141330 acccctggttacatctgcaaatttactggggtggaatgttggcatccagatgagaaccga 20141271 Query: 417 gttctttctttgcgcctaggtaaccttggtctccagggtccatttcctcgtggtcttcag 476 |||||||||||||| || || ||||||||||| ||||||||||||||| || |||||| Sbjct: 20141270 gttctttctttgcgtctcggcaaccttggtcttcagggtccatttcctgcaggccttcag 20141211 Query: 477 aattgtagcagtatgactgggctggatctgtcaaacaacaacttttcaggacttatccct 536 || |||| |||||||||||||| |||||||| | ||||||||| ||||||| || ||| Sbjct: 20141210 aactgtactagtatgactgggctagatctgtcgagtaacaactttacaggactcattcct 20141151 Query: 537 caagacatctcccgggaaataccatacttaacatcattggacctctcctacaatagtttt 596 || |||||||||| | ||||||||||||| |||||| ||||||||||||||||||| ||| Sbjct: 20141150 caggacatctcccagcaaataccatacttgacatcactggacctctcctacaataggttt 20141091 Query: 597 tctggcgccatcccacaaaatatatcaaatatgacata 634 || ||| |||||| |||||| |||||||||||||| Sbjct: 20141090 tcaggccaaatcccagtaaatatttcaaatatgacata 20141053 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 208 attatgctcctctgagggttattctt 233 ||||||||||||||||| |||||||| Sbjct: 20141482 attatgctcctctgaggcttattctt 20141457
>dbj|AK111590.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089M02, full insert sequence Length = 2434 Score = 222 bits (112), Expect = 1e-54 Identities = 282/338 (83%), Gaps = 3/338 (0%) Strand = Plus / Plus Query: 300 cagtcagtgaatgaccccaacggtgtactcaaatcctcatggaattttg---agaacgtt 356 |||||||||| || ||||| ||| |||||||||||||||||| ||||| | |||| Sbjct: 337 cagtcagtgaccgatcccaatggtatactcaaatcctcatggagttttgtcaacaacggc 396 Query: 357 actgttggtttcatatgccgatttaccggtgtggaatgttggcacccggatgaggaccgg 416 || ||||| ||| ||| |||||| || |||||||||||||| || |||||| |||| Sbjct: 397 acccctggttacatctgcaaatttactggggtggaatgttggcatccagatgagaaccga 456 Query: 417 gttctttctttgcgcctaggtaaccttggtctccagggtccatttcctcgtggtcttcag 476 |||||||||||||| || || ||||||||||| ||||||||||||||| || |||||| Sbjct: 457 gttctttctttgcgtctcggcaaccttggtcttcagggtccatttcctgcaggccttcag 516 Query: 477 aattgtagcagtatgactgggctggatctgtcaaacaacaacttttcaggacttatccct 536 || |||| |||||||||||||| |||||||| | ||||||||| ||||||| || ||| Sbjct: 517 aactgtactagtatgactgggctagatctgtcgagtaacaactttacaggactcattcct 576 Query: 537 caagacatctcccgggaaataccatacttaacatcattggacctctcctacaatagtttt 596 || |||||||||| | ||||||||||||| |||||| ||||||||||||||||||| ||| Sbjct: 577 caggacatctcccagcaaataccatacttgacatcactggacctctcctacaataggttt 636 Query: 597 tctggcgccatcccacaaaatatatcaaatatgacata 634 || ||| |||||| |||||| |||||||||||||| Sbjct: 637 tcaggccaaatcccagtaaatatttcaaatatgacata 674 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 208 attatgctcctctgagggttattctt 233 ||||||||||||||||| |||||||| Sbjct: 245 attatgctcctctgaggcttattctt 270
>ref|NM_190232.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 840 Score = 67.9 bits (34), Expect = 4e-08 Identities = 156/196 (79%), Gaps = 3/196 (1%) Strand = Plus / Plus Query: 316 ccaacggtgtactcaaatcctcatggaattttg---agaacgttactgttggtttcatat 372 ||||||| ||||| |||||||||||| ||||| | |||| ||||| || | ||||| Sbjct: 119 ccaacggcatactccaatcctcatggacttttgttgacaacggtactgacgggtacatat 178 Query: 373 gccgatttaccggtgtggaatgttggcacccggatgaggaccgggttctttctttgcgcc 432 || |||||| |||||||| || ||||| || || ||| || |||| ||||||||||| | Sbjct: 179 gcaaatttactggtgtggagtgctggcatcctgacgagaacagggtactttctttgcgtc 238 Query: 433 taggtaaccttggtctccagggtccatttcctcgtggtcttcagaattgtagcagtatga 492 | |||||||| || || ||||| |||||||||| ||||| |||| |||| || |||| Sbjct: 239 tcggtaacctaggacttcagggcccatttcctcaaggtctgcagagctgtacaagcatga 298 Query: 493 ctgggctggatctgtc 508 ||| ||||||||||| Sbjct: 299 ttggcctggatctgtc 314 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 621 tcaaatatgacatacctgaac 641 ||||||||||||||||||||| Sbjct: 427 tcaaatatgacatacctgaac 447
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 67.9 bits (34), Expect = 4e-08 Identities = 156/196 (79%), Gaps = 3/196 (1%) Strand = Plus / Plus Query: 316 ccaacggtgtactcaaatcctcatggaattttg---agaacgttactgttggtttcatat 372 ||||||| ||||| |||||||||||| ||||| | |||| ||||| || | ||||| Sbjct: 38789215 ccaacggcatactccaatcctcatggacttttgttgacaacggtactgacgggtacatat 38789274 Query: 373 gccgatttaccggtgtggaatgttggcacccggatgaggaccgggttctttctttgcgcc 432 || |||||| |||||||| || ||||| || || ||| || |||| ||||||||||| | Sbjct: 38789275 gcaaatttactggtgtggagtgctggcatcctgacgagaacagggtactttctttgcgtc 38789334 Query: 433 taggtaaccttggtctccagggtccatttcctcgtggtcttcagaattgtagcagtatga 492 | |||||||| || || ||||| |||||||||| ||||| |||| |||| || |||| Sbjct: 38789335 tcggtaacctaggacttcagggcccatttcctcaaggtctgcagagctgtacaagcatga 38789394 Query: 493 ctgggctggatctgtc 508 ||| ||||||||||| Sbjct: 38789395 ttggcctggatctgtc 38789410 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 621 tcaaatatgacatacctgaac 641 ||||||||||||||||||||| Sbjct: 38789523 tcaaatatgacatacctgaac 38789543
>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1078G07 Length = 199457 Score = 67.9 bits (34), Expect = 4e-08 Identities = 156/196 (79%), Gaps = 3/196 (1%) Strand = Plus / Plus Query: 316 ccaacggtgtactcaaatcctcatggaattttg---agaacgttactgttggtttcatat 372 ||||||| ||||| |||||||||||| ||||| | |||| ||||| || | ||||| Sbjct: 62097 ccaacggcatactccaatcctcatggacttttgttgacaacggtactgacgggtacatat 62156 Query: 373 gccgatttaccggtgtggaatgttggcacccggatgaggaccgggttctttctttgcgcc 432 || |||||| |||||||| || ||||| || || ||| || |||| ||||||||||| | Sbjct: 62157 gcaaatttactggtgtggagtgctggcatcctgacgagaacagggtactttctttgcgtc 62216 Query: 433 taggtaaccttggtctccagggtccatttcctcgtggtcttcagaattgtagcagtatga 492 | |||||||| || || ||||| |||||||||| ||||| |||| |||| || |||| Sbjct: 62217 tcggtaacctaggacttcagggcccatttcctcaaggtctgcagagctgtacaagcatga 62276 Query: 493 ctgggctggatctgtc 508 ||| ||||||||||| Sbjct: 62277 ttggcctggatctgtc 62292 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 621 tcaaatatgacatacctgaac 641 ||||||||||||||||||||| Sbjct: 62405 tcaaatatgacatacctgaac 62425
>gb|AC134517.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1325D05, complete sequence Length = 136214 Score = 44.1 bits (22), Expect = 0.57 Identities = 28/30 (93%) Strand = Plus / Plus Query: 499 tggatctgtcaaacaacaacttttcaggac 528 ||||||| |||||||||||||| ||||||| Sbjct: 63624 tggatctatcaaacaacaacttatcaggac 63653
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.57 Identities = 28/30 (93%) Strand = Plus / Plus Query: 499 tggatctgtcaaacaacaacttttcaggac 528 ||||||| |||||||||||||| ||||||| Sbjct: 9192347 tggatctatcaaacaacaacttatcaggac 9192376
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.57 Identities = 28/30 (93%) Strand = Plus / Plus Query: 499 tggatctgtcaaacaacaacttttcaggac 528 ||||||| |||||||||||||| ||||||| Sbjct: 9197486 tggatctatcaaacaacaacttatcaggac 9197515
>gb|AY791293.2| Cocos nucifera somatic embryogenesis receptor kinase mRNA, complete cds Length = 1890 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 499 tggatctgtcaaacaacaacttttcagga 527 ||||| |||||||||||||||| |||||| Sbjct: 515 tggatttgtcaaacaacaacttatcagga 543
>ref|XM_744927.1| Aspergillus fumigatus Af293 zinc metallopeptidase (Afu1g02700) partial mRNA Length = 1245 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 tgggctggatctgtcaaaca 513 |||||||||||||||||||| Sbjct: 1157 tgggctggatctgtcaaaca 1176
>gb|AC159872.12| Medicago truncatula clone mth2-29k12, complete sequence Length = 117971 Score = 40.1 bits (20), Expect = 8.9 Identities = 41/48 (85%) Strand = Plus / Minus Query: 363 ggtttcatatgccgatttaccggtgtggaatgttggcacccggatgag 410 ||||||||||| |||||| ||||| ||||||||||| || |||||| Sbjct: 52412 ggtttcatatgtagatttaatggtgttgaatgttggcatccagatgag 52365
>emb|AL356296.12| Human DNA sequence from clone RP11-340B1 on chromosome 13, complete sequence Length = 132589 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 tattcttatactgttgttgg 246 |||||||||||||||||||| Sbjct: 129331 tattcttatactgttgttgg 129312
>emb|AJ629310.1| Avena strigosa partial s5.6 gene for receptor-like-kinase Length = 1410 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 500 ggatctgtcaaacaacaacttttc 523 ||||||||||||||||||| |||| Sbjct: 1294 ggatctgtcaaacaacaacctttc 1271
>emb|AJ629309.1| Avena strigosa partial s5.8 gene for receptor-like-kinase, exon 1 Length = 949 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 500 ggatctgtcaaacaacaacttttc 523 ||||||||||||||||||| |||| Sbjct: 834 ggatctgtcaaacaacaacctttc 811
>emb|BX005061.9| Zebrafish DNA sequence from clone CH211-158F5 in linkage group 5, complete sequence Length = 155854 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 615 aatatatcaaatatgacata 634 |||||||||||||||||||| Sbjct: 145093 aatatatcaaatatgacata 145074
>gb|AC068614.5| Homo sapiens BAC clone RP11-512N1 from 2, complete sequence Length = 164706 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 aaatatatcaaatatgacat 633 |||||||||||||||||||| Sbjct: 80016 aaatatatcaaatatgacat 79997
>gb|AY190941.1| Drosophila erecta clone DERF01_12_N08 (D1431) genomic sequence Length = 43101 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 613 aaaatatatcaaatatgaca 632 |||||||||||||||||||| Sbjct: 33932 aaaatatatcaaatatgaca 33913 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,948,197 Number of Sequences: 3902068 Number of extensions: 4948197 Number of successful extensions: 85281 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85137 Number of HSP's gapped (non-prelim): 141 length of query: 654 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 631 effective length of database: 17,143,297,704 effective search space: 10817420851224 effective search space used: 10817420851224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
