ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2f14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CK5P1_ARATH (Q8H0V1) CDK5RAP1-like protein 67 6e-17
2CK5P1_DROME (Q9VGZ1) CDK5RAP1-like protein 52 3e-12
3CK5P1_HUMAN (Q96SZ6) CDK5 regulatory subunit-associated protein ... 47 5e-11
4CK5P1_CAEEL (Q09316) CDK5RAP1-like protein 50 1e-06
5CK5P1_MOUSE (Q8BTW8) CDK5 regulatory subunit-associated protein ... 47 1e-05
6CK5P1_RAT (Q9JLH6) CDK5 regulatory subunit-associated protein 1 ... 47 1e-05
7Y392_BUCBP (Q89AC2) Hypothetical UPF0004 protein bbp_392 30 0.002
8Y1001_PASMU (Q9L699) Hypothetical UPF0004 protein PM1001 30 0.002
9YLEA_ECOLI (P0AEI1) Hypothetical UPF0004 protein yleA 29 0.003
10YLEA_ECOL6 (P0AEI2) Hypothetical UPF0004 protein yleA 29 0.003
11YLEA_ECO57 (P0AEI3) Hypothetical UPF0004 protein yleA 29 0.003
12Y019_HAEIN (Q57163) Hypothetical UPF0004 protein HI0019 29 0.004
13Y3980_PSEAE (Q51470) Hypothetical UPF0004 protein PA3980 30 0.006
14Y426_BUCAP (Q8K9C2) Hypothetical UPF0004 protein BUsg426 31 0.007
15Y441_BUCAI (P57516) Hypothetical UPF0004 protein BU441 30 0.027
16Y808_RICPR (Q9ZCE8) Hypothetical UPF0004 protein RP808 25 0.91
17Y284_AQUAE (O66638) Hypothetical UPF0004 protein aq_284 26 0.91
18Y16R_MYCIO (Q49573) Hypothetical UPF0004 protein in 16S RNA 5're... 29 3.0
19YMCB_BACSU (O31778) Hypothetical UPF0004 protein ymcB 29 4.0
20Y754_TREPA (O83735) Hypothetical UPF0004 protein TP0754 29 4.0

>CK5P1_ARATH (Q8H0V1) CDK5RAP1-like protein|
          Length = 640

 Score = 66.6 bits (161), Expect(2) = 6e-17
 Identities = 31/36 (86%), Positives = 34/36 (94%)
 Frame = +2

Query: 5   GINTLLSLXETYADFTPVRISDNSVTAFVSVMRGCN 112
           GINTLLSL ETYAD +PVRIS+NS+TAFVSVMRGCN
Sbjct: 262 GINTLLSLEETYADISPVRISENSITAFVSVMRGCN 297



 Score = 38.5 bits (88), Expect(2) = 6e-17
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +3

Query: 114 NMXSFCIXPFTRGRERSRP 170
           NM +FCI PFTRGRERSRP
Sbjct: 298 NMCAFCIVPFTRGRERSRP 316



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>CK5P1_DROME (Q9VGZ1) CDK5RAP1-like protein|
          Length = 583

 Score = 52.0 bits (123), Expect(2) = 3e-12
 Identities = 24/35 (68%), Positives = 28/35 (80%)
 Frame = +2

Query: 8   INTLLSLXETYADFTPVRISDNSVTAFVSVMRGCN 112
           IN LLSL ETYAD  PVR++  S TAFVS+MRGC+
Sbjct: 218 INVLLSLDETYADVMPVRLNSESPTAFVSIMRGCD 252



 Score = 37.4 bits (85), Expect(2) = 3e-12
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = +3

Query: 114 NMXSFCIXPFTRGRERSRP 170
           NM ++CI PFTRGRERSRP
Sbjct: 253 NMCTYCIVPFTRGRERSRP 271



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>CK5P1_HUMAN (Q96SZ6) CDK5 regulatory subunit-associated protein 1 (CDK5|
           activator-binding protein C42)
          Length = 601

 Score = 46.6 bits (109), Expect(2) = 5e-11
 Identities = 21/34 (61%), Positives = 27/34 (79%)
 Frame = +2

Query: 11  NTLLSLXETYADFTPVRISDNSVTAFVSVMRGCN 112
           N LLSL ETYAD  PV+ S ++ +AFVS+MRGC+
Sbjct: 226 NVLLSLDETYADVMPVQTSASATSAFVSIMRGCD 259



 Score = 38.5 bits (88), Expect(2) = 5e-11
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +3

Query: 114 NMXSFCIXPFTRGRERSRP 170
           NM S+CI PFTRGRERSRP
Sbjct: 260 NMCSYCIVPFTRGRERSRP 278



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>CK5P1_CAEEL (Q09316) CDK5RAP1-like protein|
          Length = 547

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 22/36 (61%), Positives = 27/36 (75%)
 Frame = +2

Query: 5   GINTLLSLXETYADFTPVRISDNSVTAFVSVMRGCN 112
           GIN  LSL ETYAD  P+R+   S TAF+S+MRGC+
Sbjct: 198 GINVQLSLDETYADVQPIRVDSASKTAFISIMRGCD 233



 Score = 37.4 bits (85), Expect = 0.011
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +3

Query: 72  IRLRRSCQL*GVVTNMXSFCIXPFTRGRERSRP 170
           I + R C       NM ++C+ PFTRGRERSRP
Sbjct: 226 ISIMRGCD------NMCTYCVVPFTRGRERSRP 252



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>CK5P1_MOUSE (Q8BTW8) CDK5 regulatory subunit-associated protein 1 (CDK5|
           activator-binding protein C42)
          Length = 588

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 21/34 (61%), Positives = 27/34 (79%)
 Frame = +2

Query: 11  NTLLSLXETYADFTPVRISDNSVTAFVSVMRGCN 112
           N LLSL ETYAD  PV+ S ++ +AFVS+MRGC+
Sbjct: 225 NVLLSLDETYADIMPVQTSPSATSAFVSIMRGCD 258



 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 21/42 (50%), Positives = 24/42 (57%)
 Frame = +3

Query: 45  TSPQLGFLTIRLRRSCQL*GVVTNMXSFCIXPFTRGRERSRP 170
           TSP      + + R C       NM S+CI PFTRGRERSRP
Sbjct: 242 TSPSATSAFVSIMRGCD------NMCSYCIVPFTRGRERSRP 277



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>CK5P1_RAT (Q9JLH6) CDK5 regulatory subunit-associated protein 1 (CDK5|
           activator-binding protein C42)
          Length = 586

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 21/34 (61%), Positives = 27/34 (79%)
 Frame = +2

Query: 11  NTLLSLXETYADFTPVRISDNSVTAFVSVMRGCN 112
           N LLSL ETYAD  PV+ S ++ +AFVS+MRGC+
Sbjct: 223 NVLLSLDETYADIMPVQTSPSATSAFVSIMRGCD 256



 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 21/42 (50%), Positives = 24/42 (57%)
 Frame = +3

Query: 45  TSPQLGFLTIRLRRSCQL*GVVTNMXSFCIXPFTRGRERSRP 170
           TSP      + + R C       NM S+CI PFTRGRERSRP
Sbjct: 240 TSPSATSAFVSIMRGCD------NMCSYCIVPFTRGRERSRP 275



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>Y392_BUCBP (Q89AC2) Hypothetical UPF0004 protein bbp_392|
          Length = 445

 Score = 30.0 bits (66), Expect(2) = 0.002
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +3

Query: 123 SFCIXPFTRGRERSRP 170
           SFCI P+TRG E SRP
Sbjct: 163 SFCIVPYTRGHEISRP 178



 Score = 29.3 bits (64), Expect(2) = 0.002
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 77  VTAFVSVMRGCNKY 118
           VTAFVS+M GCNK+
Sbjct: 148 VTAFVSIMEGCNKF 161



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>Y1001_PASMU (Q9L699) Hypothetical UPF0004 protein PM1001|
          Length = 474

 Score = 29.6 bits (65), Expect(2) = 0.002
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 123 SFCIXPFTRGRERSRP 170
           SFC+ P+TRG E SRP
Sbjct: 162 SFCVVPYTRGEEVSRP 177



 Score = 29.3 bits (64), Expect(2) = 0.002
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +2

Query: 80  TAFVSVMRGCNKY 118
           TAFVS+M GCNKY
Sbjct: 148 TAFVSIMEGCNKY 160



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>YLEA_ECOLI (P0AEI1) Hypothetical UPF0004 protein yleA|
          Length = 474

 Score = 29.3 bits (64), Expect(2) = 0.003
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +2

Query: 80  TAFVSVMRGCNKY 118
           TAFVS+M GCNKY
Sbjct: 148 TAFVSIMEGCNKY 160



 Score = 28.9 bits (63), Expect(2) = 0.003
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 123 SFCIXPFTRGRERSRPS 173
           ++C+ P+TRG E SRPS
Sbjct: 162 TYCVVPYTRGEEVSRPS 178



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>YLEA_ECOL6 (P0AEI2) Hypothetical UPF0004 protein yleA|
          Length = 474

 Score = 29.3 bits (64), Expect(2) = 0.003
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +2

Query: 80  TAFVSVMRGCNKY 118
           TAFVS+M GCNKY
Sbjct: 148 TAFVSIMEGCNKY 160



 Score = 28.9 bits (63), Expect(2) = 0.003
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 123 SFCIXPFTRGRERSRPS 173
           ++C+ P+TRG E SRPS
Sbjct: 162 TYCVVPYTRGEEVSRPS 178



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>YLEA_ECO57 (P0AEI3) Hypothetical UPF0004 protein yleA|
          Length = 474

 Score = 29.3 bits (64), Expect(2) = 0.003
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +2

Query: 80  TAFVSVMRGCNKY 118
           TAFVS+M GCNKY
Sbjct: 148 TAFVSIMEGCNKY 160



 Score = 28.9 bits (63), Expect(2) = 0.003
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 123 SFCIXPFTRGRERSRPS 173
           ++C+ P+TRG E SRPS
Sbjct: 162 TYCVVPYTRGEEVSRPS 178



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>Y019_HAEIN (Q57163) Hypothetical UPF0004 protein HI0019|
          Length = 474

 Score = 29.3 bits (64), Expect(2) = 0.004
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +2

Query: 80  TAFVSVMRGCNKY 118
           TAFVS+M GCNKY
Sbjct: 148 TAFVSIMEGCNKY 160



 Score = 28.5 bits (62), Expect(2) = 0.004
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 123 SFCIXPFTRGRERSRP 170
           +FC+ P+TRG E SRP
Sbjct: 162 TFCVVPYTRGEEVSRP 177



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>Y3980_PSEAE (Q51470) Hypothetical UPF0004 protein PA3980|
          Length = 446

 Score = 29.6 bits (65), Expect(2) = 0.006
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 123 SFCIXPFTRGRERSRP 170
           SFC+ P+TRG E SRP
Sbjct: 162 SFCVVPYTRGEEVSRP 177



 Score = 27.7 bits (60), Expect(2) = 0.006
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +2

Query: 80  TAFVSVMRGCNKY 118
           TAFVSVM GC+KY
Sbjct: 148 TAFVSVMEGCSKY 160



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>Y426_BUCAP (Q8K9C2) Hypothetical UPF0004 protein BUsg426|
          Length = 439

 Score = 31.2 bits (69), Expect(2) = 0.007
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 123 SFCIXPFTRGRERSRPS 173
           SFC+ P+TRG E SRPS
Sbjct: 161 SFCVVPYTRGHEISRPS 177



 Score = 25.8 bits (55), Expect(2) = 0.007
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 80  TAFVSVMRGCNKY 118
           TA +S+M GCNKY
Sbjct: 147 TASISIMEGCNKY 159



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>Y441_BUCAI (P57516) Hypothetical UPF0004 protein BU441|
          Length = 439

 Score = 29.6 bits (65), Expect(2) = 0.027
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 123 SFCIXPFTRGRERSRP 170
           SFC+ P+TRG E SRP
Sbjct: 161 SFCVVPYTRGNEISRP 176



 Score = 25.4 bits (54), Expect(2) = 0.027
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 80  TAFVSVMRGCNKY 118
           TA +S+M GCNKY
Sbjct: 147 TADISIMEGCNKY 159



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>Y808_RICPR (Q9ZCE8) Hypothetical UPF0004 protein RP808|
          Length = 445

 Score = 25.4 bits (54), Expect(2) = 0.91
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 123 SFCIXPFTRGRERSR 167
           +FC+ P+TRG E SR
Sbjct: 167 TFCVVPYTRGAEFSR 181



 Score = 24.3 bits (51), Expect(2) = 0.91
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 32  ETYADFTPVRISDNSVTAFVSVMRGCNKY 118
           E   D  P ++     ++F+SV  GC+K+
Sbjct: 137 EAKFDNLPEQLYPQGASSFISVQEGCDKF 165



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>Y284_AQUAE (O66638) Hypothetical UPF0004 protein aq_284|
          Length = 440

 Score = 26.2 bits (56), Expect(2) = 0.91
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 123 SFCIXPFTRGRERSR 167
           ++C+ P TRG+ERSR
Sbjct: 163 TYCVVPRTRGKERSR 177



 Score = 23.5 bits (49), Expect(2) = 0.91
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 68  DNSVTAFVSVMRGCNK 115
           DN   A+V++++GC+K
Sbjct: 145 DNKYCAYVTIIKGCDK 160



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>Y16R_MYCIO (Q49573) Hypothetical UPF0004 protein in 16S RNA 5'region|
          Length = 438

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +3

Query: 117 MXSFCIXPFTRGRERSR 167
           M S+CI PF+RGR+RS+
Sbjct: 162 MCSYCIIPFSRGRQRSQ 178



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>YMCB_BACSU (O31778) Hypothetical UPF0004 protein ymcB|
          Length = 509

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +3

Query: 123 SFCIXPFTRGRERSR 167
           ++CI P+TRG+ERSR
Sbjct: 226 TYCIVPYTRGKERSR 240



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>Y754_TREPA (O83735) Hypothetical UPF0004 protein TP0754|
          Length = 456

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 114 NMXSFCIXPFTRGRERSR 167
           N  SFCI P+ RGRE SR
Sbjct: 164 NFCSFCIVPYVRGREISR 181


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,296,435
Number of Sequences: 219361
Number of extensions: 282460
Number of successful extensions: 500
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 80,573,946
effective HSP length: 34
effective length of database: 73,115,672
effective search space used: 1754776128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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