ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2f14 |
|---|---|
| Clone Library Name | barley_pub |
>CK5P1_ARATH (Q8H0V1) CDK5RAP1-like protein| Length = 640 Score = 66.6 bits (161), Expect(2) = 6e-17 Identities = 31/36 (86%), Positives = 34/36 (94%) Frame = +2 Query: 5 GINTLLSLXETYADFTPVRISDNSVTAFVSVMRGCN 112 GINTLLSL ETYAD +PVRIS+NS+TAFVSVMRGCN Sbjct: 262 GINTLLSLEETYADISPVRISENSITAFVSVMRGCN 297 Score = 38.5 bits (88), Expect(2) = 6e-17 Identities = 16/19 (84%), Positives = 17/19 (89%) Frame = +3 Query: 114 NMXSFCIXPFTRGRERSRP 170 NM +FCI PFTRGRERSRP Sbjct: 298 NMCAFCIVPFTRGRERSRP 316
>CK5P1_DROME (Q9VGZ1) CDK5RAP1-like protein| Length = 583 Score = 52.0 bits (123), Expect(2) = 3e-12 Identities = 24/35 (68%), Positives = 28/35 (80%) Frame = +2 Query: 8 INTLLSLXETYADFTPVRISDNSVTAFVSVMRGCN 112 IN LLSL ETYAD PVR++ S TAFVS+MRGC+ Sbjct: 218 INVLLSLDETYADVMPVRLNSESPTAFVSIMRGCD 252 Score = 37.4 bits (85), Expect(2) = 3e-12 Identities = 15/19 (78%), Positives = 17/19 (89%) Frame = +3 Query: 114 NMXSFCIXPFTRGRERSRP 170 NM ++CI PFTRGRERSRP Sbjct: 253 NMCTYCIVPFTRGRERSRP 271
>CK5P1_HUMAN (Q96SZ6) CDK5 regulatory subunit-associated protein 1 (CDK5| activator-binding protein C42) Length = 601 Score = 46.6 bits (109), Expect(2) = 5e-11 Identities = 21/34 (61%), Positives = 27/34 (79%) Frame = +2 Query: 11 NTLLSLXETYADFTPVRISDNSVTAFVSVMRGCN 112 N LLSL ETYAD PV+ S ++ +AFVS+MRGC+ Sbjct: 226 NVLLSLDETYADVMPVQTSASATSAFVSIMRGCD 259 Score = 38.5 bits (88), Expect(2) = 5e-11 Identities = 16/19 (84%), Positives = 17/19 (89%) Frame = +3 Query: 114 NMXSFCIXPFTRGRERSRP 170 NM S+CI PFTRGRERSRP Sbjct: 260 NMCSYCIVPFTRGRERSRP 278
>CK5P1_CAEEL (Q09316) CDK5RAP1-like protein| Length = 547 Score = 50.4 bits (119), Expect = 1e-06 Identities = 22/36 (61%), Positives = 27/36 (75%) Frame = +2 Query: 5 GINTLLSLXETYADFTPVRISDNSVTAFVSVMRGCN 112 GIN LSL ETYAD P+R+ S TAF+S+MRGC+ Sbjct: 198 GINVQLSLDETYADVQPIRVDSASKTAFISIMRGCD 233 Score = 37.4 bits (85), Expect = 0.011 Identities = 17/33 (51%), Positives = 21/33 (63%) Frame = +3 Query: 72 IRLRRSCQL*GVVTNMXSFCIXPFTRGRERSRP 170 I + R C NM ++C+ PFTRGRERSRP Sbjct: 226 ISIMRGCD------NMCTYCVVPFTRGRERSRP 252
>CK5P1_MOUSE (Q8BTW8) CDK5 regulatory subunit-associated protein 1 (CDK5| activator-binding protein C42) Length = 588 Score = 47.4 bits (111), Expect = 1e-05 Identities = 21/34 (61%), Positives = 27/34 (79%) Frame = +2 Query: 11 NTLLSLXETYADFTPVRISDNSVTAFVSVMRGCN 112 N LLSL ETYAD PV+ S ++ +AFVS+MRGC+ Sbjct: 225 NVLLSLDETYADIMPVQTSPSATSAFVSIMRGCD 258 Score = 41.6 bits (96), Expect = 6e-04 Identities = 21/42 (50%), Positives = 24/42 (57%) Frame = +3 Query: 45 TSPQLGFLTIRLRRSCQL*GVVTNMXSFCIXPFTRGRERSRP 170 TSP + + R C NM S+CI PFTRGRERSRP Sbjct: 242 TSPSATSAFVSIMRGCD------NMCSYCIVPFTRGRERSRP 277
>CK5P1_RAT (Q9JLH6) CDK5 regulatory subunit-associated protein 1 (CDK5| activator-binding protein C42) Length = 586 Score = 47.4 bits (111), Expect = 1e-05 Identities = 21/34 (61%), Positives = 27/34 (79%) Frame = +2 Query: 11 NTLLSLXETYADFTPVRISDNSVTAFVSVMRGCN 112 N LLSL ETYAD PV+ S ++ +AFVS+MRGC+ Sbjct: 223 NVLLSLDETYADIMPVQTSPSATSAFVSIMRGCD 256 Score = 41.6 bits (96), Expect = 6e-04 Identities = 21/42 (50%), Positives = 24/42 (57%) Frame = +3 Query: 45 TSPQLGFLTIRLRRSCQL*GVVTNMXSFCIXPFTRGRERSRP 170 TSP + + R C NM S+CI PFTRGRERSRP Sbjct: 240 TSPSATSAFVSIMRGCD------NMCSYCIVPFTRGRERSRP 275
>Y392_BUCBP (Q89AC2) Hypothetical UPF0004 protein bbp_392| Length = 445 Score = 30.0 bits (66), Expect(2) = 0.002 Identities = 12/16 (75%), Positives = 13/16 (81%) Frame = +3 Query: 123 SFCIXPFTRGRERSRP 170 SFCI P+TRG E SRP Sbjct: 163 SFCIVPYTRGHEISRP 178 Score = 29.3 bits (64), Expect(2) = 0.002 Identities = 11/14 (78%), Positives = 13/14 (92%) Frame = +2 Query: 77 VTAFVSVMRGCNKY 118 VTAFVS+M GCNK+ Sbjct: 148 VTAFVSIMEGCNKF 161
>Y1001_PASMU (Q9L699) Hypothetical UPF0004 protein PM1001| Length = 474 Score = 29.6 bits (65), Expect(2) = 0.002 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = +3 Query: 123 SFCIXPFTRGRERSRP 170 SFC+ P+TRG E SRP Sbjct: 162 SFCVVPYTRGEEVSRP 177 Score = 29.3 bits (64), Expect(2) = 0.002 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = +2 Query: 80 TAFVSVMRGCNKY 118 TAFVS+M GCNKY Sbjct: 148 TAFVSIMEGCNKY 160
>YLEA_ECOLI (P0AEI1) Hypothetical UPF0004 protein yleA| Length = 474 Score = 29.3 bits (64), Expect(2) = 0.003 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = +2 Query: 80 TAFVSVMRGCNKY 118 TAFVS+M GCNKY Sbjct: 148 TAFVSIMEGCNKY 160 Score = 28.9 bits (63), Expect(2) = 0.003 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = +3 Query: 123 SFCIXPFTRGRERSRPS 173 ++C+ P+TRG E SRPS Sbjct: 162 TYCVVPYTRGEEVSRPS 178
>YLEA_ECOL6 (P0AEI2) Hypothetical UPF0004 protein yleA| Length = 474 Score = 29.3 bits (64), Expect(2) = 0.003 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = +2 Query: 80 TAFVSVMRGCNKY 118 TAFVS+M GCNKY Sbjct: 148 TAFVSIMEGCNKY 160 Score = 28.9 bits (63), Expect(2) = 0.003 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = +3 Query: 123 SFCIXPFTRGRERSRPS 173 ++C+ P+TRG E SRPS Sbjct: 162 TYCVVPYTRGEEVSRPS 178
>YLEA_ECO57 (P0AEI3) Hypothetical UPF0004 protein yleA| Length = 474 Score = 29.3 bits (64), Expect(2) = 0.003 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = +2 Query: 80 TAFVSVMRGCNKY 118 TAFVS+M GCNKY Sbjct: 148 TAFVSIMEGCNKY 160 Score = 28.9 bits (63), Expect(2) = 0.003 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = +3 Query: 123 SFCIXPFTRGRERSRPS 173 ++C+ P+TRG E SRPS Sbjct: 162 TYCVVPYTRGEEVSRPS 178
>Y019_HAEIN (Q57163) Hypothetical UPF0004 protein HI0019| Length = 474 Score = 29.3 bits (64), Expect(2) = 0.004 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = +2 Query: 80 TAFVSVMRGCNKY 118 TAFVS+M GCNKY Sbjct: 148 TAFVSIMEGCNKY 160 Score = 28.5 bits (62), Expect(2) = 0.004 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = +3 Query: 123 SFCIXPFTRGRERSRP 170 +FC+ P+TRG E SRP Sbjct: 162 TFCVVPYTRGEEVSRP 177
>Y3980_PSEAE (Q51470) Hypothetical UPF0004 protein PA3980| Length = 446 Score = 29.6 bits (65), Expect(2) = 0.006 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = +3 Query: 123 SFCIXPFTRGRERSRP 170 SFC+ P+TRG E SRP Sbjct: 162 SFCVVPYTRGEEVSRP 177 Score = 27.7 bits (60), Expect(2) = 0.006 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = +2 Query: 80 TAFVSVMRGCNKY 118 TAFVSVM GC+KY Sbjct: 148 TAFVSVMEGCSKY 160
>Y426_BUCAP (Q8K9C2) Hypothetical UPF0004 protein BUsg426| Length = 439 Score = 31.2 bits (69), Expect(2) = 0.007 Identities = 12/17 (70%), Positives = 14/17 (82%) Frame = +3 Query: 123 SFCIXPFTRGRERSRPS 173 SFC+ P+TRG E SRPS Sbjct: 161 SFCVVPYTRGHEISRPS 177 Score = 25.8 bits (55), Expect(2) = 0.007 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = +2 Query: 80 TAFVSVMRGCNKY 118 TA +S+M GCNKY Sbjct: 147 TASISIMEGCNKY 159
>Y441_BUCAI (P57516) Hypothetical UPF0004 protein BU441| Length = 439 Score = 29.6 bits (65), Expect(2) = 0.027 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = +3 Query: 123 SFCIXPFTRGRERSRP 170 SFC+ P+TRG E SRP Sbjct: 161 SFCVVPYTRGNEISRP 176 Score = 25.4 bits (54), Expect(2) = 0.027 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = +2 Query: 80 TAFVSVMRGCNKY 118 TA +S+M GCNKY Sbjct: 147 TADISIMEGCNKY 159
>Y808_RICPR (Q9ZCE8) Hypothetical UPF0004 protein RP808| Length = 445 Score = 25.4 bits (54), Expect(2) = 0.91 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +3 Query: 123 SFCIXPFTRGRERSR 167 +FC+ P+TRG E SR Sbjct: 167 TFCVVPYTRGAEFSR 181 Score = 24.3 bits (51), Expect(2) = 0.91 Identities = 9/29 (31%), Positives = 16/29 (55%) Frame = +2 Query: 32 ETYADFTPVRISDNSVTAFVSVMRGCNKY 118 E D P ++ ++F+SV GC+K+ Sbjct: 137 EAKFDNLPEQLYPQGASSFISVQEGCDKF 165
>Y284_AQUAE (O66638) Hypothetical UPF0004 protein aq_284| Length = 440 Score = 26.2 bits (56), Expect(2) = 0.91 Identities = 9/15 (60%), Positives = 13/15 (86%) Frame = +3 Query: 123 SFCIXPFTRGRERSR 167 ++C+ P TRG+ERSR Sbjct: 163 TYCVVPRTRGKERSR 177 Score = 23.5 bits (49), Expect(2) = 0.91 Identities = 7/16 (43%), Positives = 13/16 (81%) Frame = +2 Query: 68 DNSVTAFVSVMRGCNK 115 DN A+V++++GC+K Sbjct: 145 DNKYCAYVTIIKGCDK 160
>Y16R_MYCIO (Q49573) Hypothetical UPF0004 protein in 16S RNA 5'region| Length = 438 Score = 29.3 bits (64), Expect = 3.0 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = +3 Query: 117 MXSFCIXPFTRGRERSR 167 M S+CI PF+RGR+RS+ Sbjct: 162 MCSYCIIPFSRGRQRSQ 178
>YMCB_BACSU (O31778) Hypothetical UPF0004 protein ymcB| Length = 509 Score = 28.9 bits (63), Expect = 4.0 Identities = 10/15 (66%), Positives = 14/15 (93%) Frame = +3 Query: 123 SFCIXPFTRGRERSR 167 ++CI P+TRG+ERSR Sbjct: 226 TYCIVPYTRGKERSR 240
>Y754_TREPA (O83735) Hypothetical UPF0004 protein TP0754| Length = 456 Score = 28.9 bits (63), Expect = 4.0 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = +3 Query: 114 NMXSFCIXPFTRGRERSR 167 N SFCI P+ RGRE SR Sbjct: 164 NFCSFCIVPYVRGREISR 181 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,296,435 Number of Sequences: 219361 Number of extensions: 282460 Number of successful extensions: 500 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 481 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 500 length of database: 80,573,946 effective HSP length: 34 effective length of database: 73,115,672 effective search space used: 1754776128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
