ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2f13 |
|---|---|
| Clone Library Name | barley_pub |
>CAX1A_ORYSA (Q769E5) Vacuolar cation/proton exchanger 1a (Ca(2+)/H(+) exchanger| 1a) (OsCAX1a) Length = 451 Score = 147 bits (372), Expect = 5e-36 Identities = 74/98 (75%), Positives = 80/98 (81%) Frame = +2 Query: 44 ILLGTKXXXXXXXXXXXXXXQCFHFGQVWVFALSLIGLIPLAERVSFLTEQIALYTGPTI 223 + L TK QCF F QVWVFALSL+GLIPLAERVSFLTEQIALYTGPT+ Sbjct: 60 VFLATKLAVLFPAVPLAIAAQCFRFDQVWVFALSLLGLIPLAERVSFLTEQIALYTGPTV 119 Query: 224 GGLLNATCGNATELIIAMFALVQGKIEVVKCSLLGSVL 337 GGLLNATCGNATELIIA+FAL++GKIEVVKCSLLGSVL Sbjct: 120 GGLLNATCGNATELIIALFALLKGKIEVVKCSLLGSVL 157
>CAX1B_ORYSA (Q5TKG3) Vacuolar cation/proton exchanger 1b (Ca(2+)/H(+) exchanger| 1b) (OsCAX1b) Length = 453 Score = 129 bits (325), Expect = 1e-30 Identities = 65/98 (66%), Positives = 74/98 (75%) Frame = +2 Query: 44 ILLGTKXXXXXXXXXXXXXXQCFHFGQVWVFALSLIGLIPLAERVSFLTEQIALYTGPTI 223 +LL T+ HFGQVWVF LSLIGL+PLAER+SFLTEQIA YTGPT+ Sbjct: 68 VLLTTRLFLLFPAVLLAIAATYLHFGQVWVFVLSLIGLVPLAERLSFLTEQIAFYTGPTV 127 Query: 224 GGLLNATCGNATELIIAMFALVQGKIEVVKCSLLGSVL 337 GGLLNAT GN TE+IIA+ AL +GKIEVVKCSLLGS+L Sbjct: 128 GGLLNATFGNVTEVIIALLALREGKIEVVKCSLLGSIL 165
>CAX1C_ORYSA (Q5KTQ9) Vacuolar cation/proton exchanger 1c (Ca(2+)/H(+) exchanger| 1c) (OsCAX1c) Length = 450 Score = 110 bits (276), Expect = 7e-25 Identities = 56/98 (57%), Positives = 68/98 (69%) Frame = +2 Query: 44 ILLGTKXXXXXXXXXXXXXXQCFHFGQVWVFALSLIGLIPLAERVSFLTEQIALYTGPTI 223 +LLGTK + G+VWVFA SLIGL PLAERVSFL+E IA GPT Sbjct: 75 VLLGTKLYPLFSAVPLAVAAESLRLGRVWVFAFSLIGLAPLAERVSFLSEHIANTVGPTA 134 Query: 224 GGLLNATCGNATELIIAMFALVQGKIEVVKCSLLGSVL 337 GG++NATCGN ELIIA+FAL + K+E++K SLLGS+L Sbjct: 135 GGIMNATCGNVPELIIALFALHKNKMEILKWSLLGSIL 172
>CAX2_ORYSA (Q5KQN0) Vacuolar cation/proton exchanger 2 (Ca(2+)/H(+) exchanger| 2) (OsCAX2) Length = 437 Score = 102 bits (253), Expect = 3e-22 Identities = 50/72 (69%), Positives = 60/72 (83%) Frame = +2 Query: 122 QVWVFALSLIGLIPLAERVSFLTEQIALYTGPTIGGLLNATCGNATELIIAMFALVQGKI 301 Q WVF SLIG+ PLAER+ + TEQ+ALYTGPTIGGLLNAT GNATE+II+++AL G I Sbjct: 94 QGWVFLFSLIGITPLAERLGYATEQLALYTGPTIGGLLNATFGNATEMIISLYALKNGMI 153 Query: 302 EVVKCSLLGSVL 337 VV+ SLLGS+L Sbjct: 154 RVVQQSLLGSIL 165
>CAX3_ORYSA (Q6K1C4) Vacuolar cation/proton exchanger 3 (Ca(2+)/H(+) exchanger| 3) (OsCAX3) Length = 417 Score = 95.1 bits (235), Expect = 4e-20 Identities = 45/69 (65%), Positives = 58/69 (84%) Frame = +2 Query: 131 VFALSLIGLIPLAERVSFLTEQIALYTGPTIGGLLNATCGNATELIIAMFALVQGKIEVV 310 VF S++G+ PLAER+ + TEQ+A+YTGPT+GGLLNAT GNATE+IIA++AL G I VV Sbjct: 76 VFLFSMLGITPLAERLGYATEQLAIYTGPTVGGLLNATFGNATEMIIAIYALKNGMIRVV 135 Query: 311 KCSLLGSVL 337 + SLLGS+L Sbjct: 136 QQSLLGSIL 144
>CAX4_ORYSA (Q6YXZ1) Putative vacuolar cation/proton exchanger 4 (Ca(2+)/H(+)| exchanger 4) (OsCAX4) Length = 447 Score = 70.9 bits (172), Expect = 8e-13 Identities = 39/71 (54%), Positives = 53/71 (74%), Gaps = 1/71 (1%) Frame = +2 Query: 128 WVFALSLIGLIPLAERVSFLTE-QIALYTGPTIGGLLNATCGNATELIIAMFALVQGKIE 304 WVF LS++G+IPLAER+ F T+ QI+ +G LLN+ GNATELII++ AL +GK+ Sbjct: 95 WVFPLSMLGIIPLAERLGFATDWQISC----EVGRLLNSAFGNATELIISIHALSRGKLH 150 Query: 305 VVKCSLLGSVL 337 VV+ LLGS+L Sbjct: 151 VVQQCLLGSIL 161
>VCX1_YEAST (Q99385) Vacuolar calcium ion transporter (Vacuolar Ca(2+)/H(+)| exchanger) (High copy number undoes manganese protein 1) (Manganese resistance 1 protein) Length = 411 Score = 69.7 bits (169), Expect = 2e-12 Identities = 34/76 (44%), Positives = 51/76 (67%) Frame = +2 Query: 110 FHFGQVWVFALSLIGLIPLAERVSFLTEQIALYTGPTIGGLLNATCGNATELIIAMFALV 289 F F + + +IPLA ++ TE++A G TIGGLLNAT GNA ELI+++ AL Sbjct: 56 FQLSHTLTFLFNFLAIIPLAAILANATEELADKAGNTIGGLLNATFGNAVELIVSIIALK 115 Query: 290 QGKIEVVKCSLLGSVL 337 +G++ +V+ S+LGS+L Sbjct: 116 KGQVRIVQASMLGSLL 131
>YN61_YEAST (P42839) Protein YNL321W| Length = 908 Score = 37.7 bits (86), Expect = 0.007 Identities = 22/69 (31%), Positives = 35/69 (50%) Frame = +2 Query: 131 VFALSLIGLIPLAERVSFLTEQIALYTGPTIGGLLNATCGNATELIIAMFALVQGKIEVV 310 +F L L IPLA + I+ T +G ++NA E+ + AL Q K +V Sbjct: 531 IFILCLTSTIPLAFYIGQAVASISAQTSMGVGAVINAFFSTIVEIFLYCVALQQKKGLLV 590 Query: 311 KCSLLGSVL 337 + S++GS+L Sbjct: 591 EGSMIGSIL 599
>XPC_DROME (Q24595) DNA-repair protein complementing XP-C cells homolog| (Xeroderma pigmentosum group C-complementing protein homolog) (XPCDM) (Mutagen-sensitive 209 protein) Length = 1293 Score = 30.4 bits (67), Expect = 1.1 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = -3 Query: 325 EQRAFHHLDLPLHQREHGDDQLRGVAARRVQETANCGASVEGNLLCQEADSLSQ 164 EQ+ H L++ L +R + D + R + +V S++ N L E+DSL Q Sbjct: 357 EQKTQHELEMALKRRLNRDIKDRQILLHKVSLMCQIARSLKYNRLLSESDSLMQ 410
>PRSS8_HUMAN (Q16651) Prostasin precursor (EC 3.4.21.-) [Contains: Prostasin| light chain; Prostasin heavy chain] Length = 343 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/68 (25%), Positives = 31/68 (45%) Frame = -1 Query: 252 LPHVAFRRPPIVGPV*RAICSVRKLTRSARGMRPIRLSANTHTWPKWKHCATTASGTATK 73 +PH ++ + G + A+ + + +R +RPI L A ++P HC T G Sbjct: 121 IPHPSYLQEGSQGDI--ALLQLSRPITFSRYIRPICLPAANASFPNGLHCTVTGWGHVAP 178 Query: 72 RTASLVPR 49 + L P+ Sbjct: 179 SVSLLTPK 186
>CLK1_HUMAN (P49759) Dual specificity protein kinase CLK1 (EC 2.7.12.1)| (CDC-like kinase 1) Length = 484 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/49 (34%), Positives = 22/49 (44%) Frame = -3 Query: 289 HQREHGDDQLRGVAARRVQETANCGASVEGNLLCQEADSLSQRNEADQT 143 H+R HG R + T + EG+L+CQ D LS R E T Sbjct: 125 HRRSHGKSHRR-------KRTRSVEDDEEGHLICQSGDVLSARYEIVDT 166
>YTZ4_AGRVI (P70796) Hypothetical 31.6 kDa protein in TAR-I ttuC' 3'region| (ORFZ4) Length = 280 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = +1 Query: 181 LPDRADCPLHWPHNWRSPERDVRQRHG 261 LPDRA+ H H R R VRQR+G Sbjct: 105 LPDRAEKQAHDDHPERLQNRSVRQRNG 131
>RCBT2_RAT (Q6P798) RCC1 and BTB domain-containing protein 2 (Regulator of| chromosome condensation and BTB domain-containing protein 2) (Chromosome condensation 1-like) Length = 551 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -2 Query: 266 SAPWRCRTSRSGDRQLWGQCRGQSAL 189 SA S+ G +WGQCRGQS + Sbjct: 318 SAHTSAAKSQGGHVYMWGQCRGQSVI 343
>WEE1_SCHPO (P07527) Mitosis inhibitor protein kinase wee1 (EC 2.7.11.1) (P107| protein kinase homolog) Length = 877 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -1 Query: 336 STEPSSEHFTTSIFPCTSANMAMISSVALPHVA 238 S+ PSS H T++ FP SA ++ S A P A Sbjct: 253 SSIPSSRHTTSNHFPSNSAQSSLFSPTARPLTA 285
>IP6K2_RAT (Q9R0U1) Inositol hexakisphosphate kinase 2 (EC 2.7.4.21) (InsP6| kinase 2) (Inositol hexakisphosphate kinase 2) (P(i)-uptake stimulator) (PiUS) Length = 424 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = -3 Query: 304 LDLPLHQREHGDDQLRGVAARRVQETANCGASVEGNLLC 188 LDL + R+HGDD AA ++++ ++V G +C Sbjct: 217 LDLKMGTRQHGDDASEEKAANQIRKCQQSTSAVIGVRVC 255
>IP6K2_RABIT (Q95221) Inositol hexakisphosphate kinase 2 (EC 2.7.4.21) (InsP6| kinase 2) (Inositol hexakisphosphate kinase 2) (P(i)-uptake stimulator) (PiUS) Length = 425 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = -3 Query: 304 LDLPLHQREHGDDQLRGVAARRVQETANCGASVEGNLLC 188 LDL + R+HGDD AA ++++ ++V G +C Sbjct: 218 LDLKMGTRQHGDDASEEKAANQIRKCQQSTSAVIGVRVC 256
>POLG_DEN2J (P07564) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3391 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -1 Query: 135 NTHTWPKWKHCATTASGTATKRTASLVP 52 +T TW + CATT KR+ +LVP Sbjct: 184 STSTWVTYGTCATTGEHRREKRSVALVP 211
>IP6K2_MOUSE (Q80V72) Inositol hexakisphosphate kinase 2 (EC 2.7.4.21) (InsP6| kinase 2) (Inositol hexakisphosphate kinase 2) (P(i)-uptake stimulator) (PiUS) Length = 448 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = -3 Query: 304 LDLPLHQREHGDDQLRGVAARRVQETANCGASVEGNLLC 188 LDL + R+HGDD AA ++++ ++V G +C Sbjct: 241 LDLKMGTRQHGDDASEEKAANQIRKCQQSTSAVIGVRVC 279
>IP6K2_HUMAN (Q9UHH9) Inositol hexakisphosphate kinase 2 (EC 2.7.4.21) (InsP6| kinase 2) (Inositol hexakisphosphate kinase 2) (P(i)-uptake stimulator) (PiUS) Length = 426 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = -3 Query: 304 LDLPLHQREHGDDQLRGVAARRVQETANCGASVEGNLLC 188 LDL + R+HGDD AA ++++ ++V G +C Sbjct: 219 LDLKMGTRQHGDDASEEKAANQIRKCQQSTSAVIGVRVC 257
>NFIC_CHICK (P17926) Nuclear factor 1 C-type (Nuclear factor 1/C) (NF1-C)| (NFI-C) (NF-I/C) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 439 Score = 27.7 bits (60), Expect = 7.4 Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Frame = -1 Query: 336 STEPSSE-HF-TTSIFPCTSANMAMISSVALPHVAFRRPPIVGP 211 S PSS HF TTSI P T+ S PH A R PP + P Sbjct: 366 SPHPSSTLHFPTTSILPQTA-------STYFPHTAIRYPPHLNP 402
>Y1288_MYCBO (P64784) Hypothetical protein Mb1288c| Length = 419 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = +2 Query: 197 IALYTGPTIGGLLNATCGNATELIIAMFALVQGKIEVVKCSLLGS 331 +A GP IGGL+ AT G T + I A + + L G+ Sbjct: 152 LAFIVGPAIGGLMIATVGGITTMWITATAFGLSILAIAALQLEGA 196
>Y1258_MYCTU (P64783) Hypothetical protein Rv1258c/MT1297| Length = 419 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = +2 Query: 197 IALYTGPTIGGLLNATCGNATELIIAMFALVQGKIEVVKCSLLGS 331 +A GP IGGL+ AT G T + I A + + L G+ Sbjct: 152 LAFIVGPAIGGLMIATVGGITTMWITATAFGLSILAIAALQLEGA 196
>NFIC_PIG (P21999) Nuclear factor 1 C-type (Nuclear factor 1/C) (NF1-C)| (NFI-C) (NF-I/C) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 506 Score = 27.7 bits (60), Expect = 7.4 Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Frame = -1 Query: 336 STEPSSE-HF-TTSIFPCTSANMAMISSVALPHVAFRRPPIVGP 211 S PSS HF TTSI P T+ S PH A R PP + P Sbjct: 366 SPHPSSALHFPTTSILPQTA-------STYFPHTAIRYPPHLNP 402
>NFIC_HUMAN (P08651) Nuclear factor 1 C-type (Nuclear factor 1/C) (NF1-C)| (NFI-C) (NF-I/C) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 508 Score = 27.7 bits (60), Expect = 7.4 Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Frame = -1 Query: 336 STEPSSE-HF-TTSIFPCTSANMAMISSVALPHVAFRRPPIVGP 211 S PSS HF TTSI P T+ S PH A R PP + P Sbjct: 366 SPHPSSALHFPTTSILPQTA-------STYFPHTAIRYPPHLNP 402
>IP6K1_HUMAN (Q92551) Inositol hexaphosphate kinase 1 (EC 2.7.4.21) (InsP6| kinase 1) (Inositol hexakisphosphate kinase 1) Length = 441 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = -3 Query: 304 LDLPLHQREHGDDQLRGVAARRVQETANCGASVEGNLLC 188 LDL + R+HGDD AAR++++ ++ G +C Sbjct: 223 LDLKMGTRQHGDDASAEKAARQMRKCEQSTSATLGVRVC 261
>RCBT2_MOUSE (Q99LJ7) RCC1 and BTB domain-containing protein 2 (Regulator of| chromosome condensation and BTB domain-containing protein 2) (Chromosome condensation 1-like) Length = 551 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 266 SAPWRCRTSRSGDRQLWGQCRGQSAL 189 SA ++ G +WGQCRGQS + Sbjct: 318 SAHTSAAKTQGGHVYMWGQCRGQSVI 343
>RCBT1_HUMAN (Q8NDN9) RCC1 and BTB domain-containing protein 1 (Regulator of| chromosome condensation and BTB domain-containing protein 1) (Chronic lymphocytic leukemia deletion region gene 7 protein) (CLL deletion region gene 7 protein) Length = 531 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 266 SAPWRCRTSRSGDRQLWGQCRGQSAL 189 SA ++ G +WGQCRGQS + Sbjct: 294 SAHTSAAKTQGGHVYMWGQCRGQSVI 319
>PRSS8_RAT (Q9ES87) Prostasin precursor (EC 3.4.21.-) [Contains: Prostasin| light chain; Prostasin heavy chain] Length = 342 Score = 27.3 bits (59), Expect = 9.7 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Frame = -1 Query: 282 ANMAMISSVA--LPHVAFRRPPIVGPV*RAICSVRKLTRSARGMRPIRLSANTHTWPKWK 109 +N ++ +VA + H ++R G + A+ + +R +RPI L A ++P Sbjct: 109 SNDIVVHTVAQIISHSSYREEGSQGDI--ALIRLSSPVTFSRYIRPICLPAANASFPNGL 166 Query: 108 HCATTASGTATKRTASLVPR 49 HC T G + PR Sbjct: 167 HCTVTGWGHVAPSVSLQTPR 186
>IP6K3_HUMAN (Q96PC2) Inositol hexaphosphate kinase 3 (EC 2.7.4.21) (InsP6| kinase 3) (Inositol hexakisphosphate kinase 3) Length = 410 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = -3 Query: 304 LDLPLHQREHGDDQLRGVAARRVQETANCGASVEGNLLC 188 LDL + R+HGDD AR +++ A ++ G +C Sbjct: 214 LDLKMGTRQHGDDASEEKKARHMRKCAQSTSACLGVRIC 252
>IP6K1_MOUSE (Q6PD10) Inositol hexaphosphate kinase 1 (EC 2.7.4.21) (InsP6| kinase 1) (Inositol hexakisphosphate kinase 1) Length = 433 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = -3 Query: 304 LDLPLHQREHGDDQLRGVAARRVQETANCGASVEGNLLC 188 LDL + R+HGDD AAR++++ ++ G +C Sbjct: 223 LDLKMGTRQHGDDASAEKAARQMRKCEQSTSATLGVRVC 261
>CPN_DROME (Q02910) Calphotin| Length = 864 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -1 Query: 294 PCTSANMAMISSVALPHVAFRRPPIVGPV 208 P +A++A ++SVA P VA PP PV Sbjct: 69 PIAAASVAPVASVAPPVVAAPTPPAASPV 97
>IP6K3_MOUSE (Q8BWD2) Inositol hexaphosphate kinase 3 (EC 2.7.4.21) (InsP6| kinase 3) (Inositol hexakisphosphate kinase 3) Length = 396 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = -3 Query: 304 LDLPLHQREHGDDQLRGVAARRVQETANCGASVEGNLLC 188 LDL + R+HGDD AR +++ A ++ G +C Sbjct: 209 LDLKMGTRQHGDDASEEKKARHMKKCAQSTSACLGVRIC 247
>TRHY_SHEEP (P22793) Trichohyalin| Length = 1549 Score = 27.3 bits (59), Expect = 9.7 Identities = 22/76 (28%), Positives = 28/76 (36%) Frame = -3 Query: 337 EHGAEQRAFHHLDLPLHQREHGDDQLRGVAARRVQETANCGASVEGNLLCQEADSLSQRN 158 E EQR D + E + R RRVQE E L +E + L +R Sbjct: 1380 EQEEEQRRQRQRDRKFLEEEQSLQREREEEKRRVQEQDRKFLEQEEQLHREEQEELRRRQ 1439 Query: 157 EADQTKRKHPYLAEVE 110 + DQ R A E Sbjct: 1440 QLDQQYRAEEQFAREE 1455 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,191,340 Number of Sequences: 219361 Number of extensions: 598302 Number of successful extensions: 2086 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 2044 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2085 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
