ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2f13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_193473.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1275 Score = 260 bits (131), Expect = 3e-66 Identities = 270/315 (85%), Gaps = 1/315 (0%) Strand = Plus / Plus Query: 25 ctcgccaacctccaggnagatcctcctcggcaccaagctcgccgtcctcttcgtcgccgt 84 |||||||||||||||| || || |||||| |||||||||||||||||||||| |||||| Sbjct: 79 ctcgccaacctccagg-aggtcttcctcgccaccaagctcgccgtcctcttccccgccgt 137 Query: 85 gccgctcgccgtcgtcgcgcagtgcttccacttcggccaggtatgggtgtttgcgcttag 144 ||||||||| ||| ||| |||||||||| ||||| |||||| |||||||| || ||||| Sbjct: 138 cccgctcgccatcgccgcccagtgcttccgcttcgaccaggtgtgggtgttcgctcttag 197 Query: 145 tctgatcggcctcattcctctggctgagcgagtcagcttcctgacagagcagattgccct 204 | | | |||||||| ||||| || ||| ||||||||||||| |||||||||||||| || Sbjct: 198 tttactgggcctcatccctctcgccgagagagtcagcttcctcacagagcagattgcact 257 Query: 205 ctacactggccccacaattggcggtctcctgaacgcgacgtgcggcaacgccacggagct 264 |||||| || ||||| | ||||| || ||||||||||||||||| ||||| |||||||| Sbjct: 258 ctacaccggtcccaccgtgggcgggctgctgaacgcgacgtgcgggaacgcgacggagct 317 Query: 265 gatcatcgccatgttcgcgctggtgcaagggaagatcgaggtggtgaaatgctcgctgct 324 ||||||||| ||||||||||| | | ||||||||||||||||| || ||||| ||||| Sbjct: 318 gatcatcgcgctgttcgcgctgctcaaggggaagatcgaggtggtcaagtgctccctgct 377 Query: 325 cggctccgtgctctc 339 |||||||| ||||| Sbjct: 378 gggctccgtcctctc 392
>dbj|AB112656.1| Oryza sativa (japonica cultivar-group) OsCAX1a mRNA for cation/proton exchanger 1a, complete cds Length = 1895 Score = 260 bits (131), Expect = 3e-66 Identities = 270/315 (85%), Gaps = 1/315 (0%) Strand = Plus / Plus Query: 25 ctcgccaacctccaggnagatcctcctcggcaccaagctcgccgtcctcttcgtcgccgt 84 |||||||||||||||| || || |||||| |||||||||||||||||||||| |||||| Sbjct: 361 ctcgccaacctccagg-aggtcttcctcgccaccaagctcgccgtcctcttccccgccgt 419 Query: 85 gccgctcgccgtcgtcgcgcagtgcttccacttcggccaggtatgggtgtttgcgcttag 144 ||||||||| ||| ||| |||||||||| ||||| |||||| |||||||| || ||||| Sbjct: 420 cccgctcgccatcgccgcccagtgcttccgcttcgaccaggtgtgggtgttcgctcttag 479 Query: 145 tctgatcggcctcattcctctggctgagcgagtcagcttcctgacagagcagattgccct 204 | | | |||||||| ||||| || ||| ||||||||||||| |||||||||||||| || Sbjct: 480 tttactgggcctcatccctctcgccgagagagtcagcttcctcacagagcagattgcact 539 Query: 205 ctacactggccccacaattggcggtctcctgaacgcgacgtgcggcaacgccacggagct 264 |||||| || ||||| | ||||| || ||||||||||||||||| ||||| |||||||| Sbjct: 540 ctacaccggtcccaccgtgggcgggctgctgaacgcgacgtgcgggaacgcgacggagct 599 Query: 265 gatcatcgccatgttcgcgctggtgcaagggaagatcgaggtggtgaaatgctcgctgct 324 ||||||||| ||||||||||| | | ||||||||||||||||| || ||||| ||||| Sbjct: 600 gatcatcgcgctgttcgcgctgctcaaggggaagatcgaggtggtcaagtgctccctgct 659 Query: 325 cggctccgtgctctc 339 |||||||| ||||| Sbjct: 660 gggctccgtcctctc 674
>dbj|AK100765.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023119J24, full insert sequence Length = 1962 Score = 260 bits (131), Expect = 3e-66 Identities = 270/315 (85%), Gaps = 1/315 (0%) Strand = Plus / Plus Query: 25 ctcgccaacctccaggnagatcctcctcggcaccaagctcgccgtcctcttcgtcgccgt 84 |||||||||||||||| || || |||||| |||||||||||||||||||||| |||||| Sbjct: 352 ctcgccaacctccagg-aggtcttcctcgccaccaagctcgccgtcctcttccccgccgt 410 Query: 85 gccgctcgccgtcgtcgcgcagtgcttccacttcggccaggtatgggtgtttgcgcttag 144 ||||||||| ||| ||| |||||||||| ||||| |||||| |||||||| || ||||| Sbjct: 411 cccgctcgccatcgccgcccagtgcttccgcttcgaccaggtgtgggtgttcgctcttag 470 Query: 145 tctgatcggcctcattcctctggctgagcgagtcagcttcctgacagagcagattgccct 204 | | | |||||||| ||||| || ||| ||||||||||||| |||||||||||||| || Sbjct: 471 tttactgggcctcatccctctcgccgagagagtcagcttcctcacagagcagattgcact 530 Query: 205 ctacactggccccacaattggcggtctcctgaacgcgacgtgcggcaacgccacggagct 264 |||||| || ||||| | ||||| || ||||||||||||||||| ||||| |||||||| Sbjct: 531 ctacaccggtcccaccgtgggcgggctgctgaacgcgacgtgcgggaacgcgacggagct 590 Query: 265 gatcatcgccatgttcgcgctggtgcaagggaagatcgaggtggtgaaatgctcgctgct 324 ||||||||| ||||||||||| | | ||||||||||||||||| || ||||| ||||| Sbjct: 591 gatcatcgcgctgttcgcgctgctcaaggggaagatcgaggtggtcaagtgctccctgct 650 Query: 325 cggctccgtgctctc 339 |||||||| ||||| Sbjct: 651 gggctccgtcctctc 665
>gb|AY108295.1| Zea mays PCO087284 mRNA sequence Length = 1825 Score = 190 bits (96), Expect = 2e-45 Identities = 243/292 (83%) Strand = Plus / Plus Query: 48 tcctcggcaccaagctcgccgtcctcttcgtcgccgtgccgctcgccgtcgtcgcgcagt 107 |||||||||||||||||||||| || ||| |||||||||||||||| ||| ||| |||| Sbjct: 321 tcctcggcaccaagctcgccgtgctattccccgccgtgccgctcgccatcgccgcccagt 380 Query: 108 gcttccacttcggccaggtatgggtgtttgcgcttagtctgatcggcctcattcctctgg 167 || |||||||||||||| ||||||||| |||| || || |||||||||| || || | Sbjct: 381 gcgcgcacttcggccaggtgtgggtgttttcgctcagcctactcggcctcatccccctcg 440 Query: 168 ctgagcgagtcagcttcctgacagagcagattgccctctacactggccccacaattggcg 227 | ||||| ||||||||||| || |||||||| || | ||||| |||||||| | |||| Sbjct: 441 ccgagcgtgtcagcttcctcaccgagcagatcgcgatatacaccggccccaccgtgggcg 500 Query: 228 gtctcctgaacgcgacgtgcggcaacgccacggagctgatcatcgccatgttcgcgctgg 287 | ||||| ||||||||||||||||||||||||||||| |||||||| | |||||||| Sbjct: 501 gcctcctcaacgcgacgtgcggcaacgccacggagctcatcatcgcgctcttcgcgctca 560 Query: 288 tgcaagggaagatcgaggtggtgaaatgctcgctgctcggctccgtgctctc 339 || | || |||||||||| || || ||||| || ||||||||||| ||||| Sbjct: 561 tggagggccagatcgaggtcgtcaagtgctccctcctcggctccgtcctctc 612
>gb|AF489111.1| Oryza sativa putative Ca2+/H+ exchanger mRNA, complete cds Length = 1065 Score = 111 bits (56), Expect = 1e-21 Identities = 101/116 (87%) Strand = Plus / Plus Query: 224 ggcggtctcctgaacgcgacgtgcggcaacgccacggagctgatcatcgccatgttcgcg 283 ||||| || ||||||||||||||||| ||||| ||||||||||||||||| |||||||| Sbjct: 28 ggcgggctgctgaacgcgacgtgcgggaacgcgacggagctgatcatcgcgctgttcgcg 87 Query: 284 ctggtgcaagggaagatcgaggtggtgaaatgctcgctgctcggctccgtgctctc 339 ||| | | ||||||||||||||||| || ||||| ||||| |||||||| ||||| Sbjct: 88 ctgctcaaggggaagatcgaggtggtcaagtgctccctgctgggctccgtcctctc 143
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 111 bits (56), Expect = 1e-21 Identities = 101/116 (87%) Strand = Plus / Minus Query: 224 ggcggtctcctgaacgcgacgtgcggcaacgccacggagctgatcatcgccatgttcgcg 283 ||||| || ||||||||||||||||| ||||| ||||||||||||||||| |||||||| Sbjct: 21070002 ggcgggctgctgaacgcgacgtgcgggaacgcgacggagctgatcatcgcgctgttcgcg 21069943 Query: 284 ctggtgcaagggaagatcgaggtggtgaaatgctcgctgctcggctccgtgctctc 339 ||| | | ||||||||||||||||| || ||||| ||||| |||||||| ||||| Sbjct: 21069942 ctgctcaaggggaagatcgaggtggtcaagtgctccctgctgggctccgtcctctc 21069887 Score = 99.6 bits (50), Expect = 6e-18 Identities = 90/102 (88%), Gaps = 1/102 (0%) Strand = Plus / Minus Query: 25 ctcgccaacctccaggnagatcctcctcggcaccaagctcgccgtcctcttcgtcgccgt 84 |||||||||||||||| || || |||||| |||||||||||||||||||||| |||||| Sbjct: 21072480 ctcgccaacctccagg-aggtcttcctcgccaccaagctcgccgtcctcttccccgccgt 21072422 Query: 85 gccgctcgccgtcgtcgcgcagtgcttccacttcggccaggt 126 ||||||||| ||| ||| |||||||||| ||||| |||||| Sbjct: 21072421 cccgctcgccatcgccgcccagtgcttccgcttcgaccaggt 21072380 Score = 48.1 bits (24), Expect = 0.018 Identities = 60/72 (83%) Strand = Plus / Minus Query: 122 caggtatgggtgtttgcgcttagtctgatcggcctcattcctctggctgagcgagtcagc 181 ||||| |||||||| || |||||| | | |||||||| ||||| || ||| |||||||| Sbjct: 21070646 caggtgtgggtgttcgctcttagtttactgggcctcatccctctcgccgagagagtcagc 21070587 Query: 182 ttcctgacagag 193 ||||| |||||| Sbjct: 21070586 ttcctcacagag 21070575
>dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1144D11 Length = 157943 Score = 111 bits (56), Expect = 1e-21 Identities = 101/116 (87%) Strand = Plus / Minus Query: 224 ggcggtctcctgaacgcgacgtgcggcaacgccacggagctgatcatcgccatgttcgcg 283 ||||| || ||||||||||||||||| ||||| ||||||||||||||||| |||||||| Sbjct: 37547 ggcgggctgctgaacgcgacgtgcgggaacgcgacggagctgatcatcgcgctgttcgcg 37488 Query: 284 ctggtgcaagggaagatcgaggtggtgaaatgctcgctgctcggctccgtgctctc 339 ||| | | ||||||||||||||||| || ||||| ||||| |||||||| ||||| Sbjct: 37487 ctgctcaaggggaagatcgaggtggtcaagtgctccctgctgggctccgtcctctc 37432 Score = 99.6 bits (50), Expect = 6e-18 Identities = 90/102 (88%), Gaps = 1/102 (0%) Strand = Plus / Minus Query: 25 ctcgccaacctccaggnagatcctcctcggcaccaagctcgccgtcctcttcgtcgccgt 84 |||||||||||||||| || || |||||| |||||||||||||||||||||| |||||| Sbjct: 40025 ctcgccaacctccagg-aggtcttcctcgccaccaagctcgccgtcctcttccccgccgt 39967 Query: 85 gccgctcgccgtcgtcgcgcagtgcttccacttcggccaggt 126 ||||||||| ||| ||| |||||||||| ||||| |||||| Sbjct: 39966 cccgctcgccatcgccgcccagtgcttccgcttcgaccaggt 39925 Score = 48.1 bits (24), Expect = 0.018 Identities = 60/72 (83%) Strand = Plus / Minus Query: 122 caggtatgggtgtttgcgcttagtctgatcggcctcattcctctggctgagcgagtcagc 181 ||||| |||||||| || |||||| | | |||||||| ||||| || ||| |||||||| Sbjct: 38191 caggtgtgggtgttcgctcttagtttactgggcctcatccctctcgccgagagagtcagc 38132 Query: 182 ttcctgacagag 193 ||||| |||||| Sbjct: 38131 ttcctcacagag 38120
>dbj|AP003372.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1014_G12 Length = 158830 Score = 111 bits (56), Expect = 1e-21 Identities = 101/116 (87%) Strand = Plus / Minus Query: 224 ggcggtctcctgaacgcgacgtgcggcaacgccacggagctgatcatcgccatgttcgcg 283 ||||| || ||||||||||||||||| ||||| ||||||||||||||||| |||||||| Sbjct: 133204 ggcgggctgctgaacgcgacgtgcgggaacgcgacggagctgatcatcgcgctgttcgcg 133145 Query: 284 ctggtgcaagggaagatcgaggtggtgaaatgctcgctgctcggctccgtgctctc 339 ||| | | ||||||||||||||||| || ||||| ||||| |||||||| ||||| Sbjct: 133144 ctgctcaaggggaagatcgaggtggtcaagtgctccctgctgggctccgtcctctc 133089 Score = 99.6 bits (50), Expect = 6e-18 Identities = 90/102 (88%), Gaps = 1/102 (0%) Strand = Plus / Minus Query: 25 ctcgccaacctccaggnagatcctcctcggcaccaagctcgccgtcctcttcgtcgccgt 84 |||||||||||||||| || || |||||| |||||||||||||||||||||| |||||| Sbjct: 135682 ctcgccaacctccagg-aggtcttcctcgccaccaagctcgccgtcctcttccccgccgt 135624 Query: 85 gccgctcgccgtcgtcgcgcagtgcttccacttcggccaggt 126 ||||||||| ||| ||| |||||||||| ||||| |||||| Sbjct: 135623 cccgctcgccatcgccgcccagtgcttccgcttcgaccaggt 135582 Score = 48.1 bits (24), Expect = 0.018 Identities = 60/72 (83%) Strand = Plus / Minus Query: 122 caggtatgggtgtttgcgcttagtctgatcggcctcattcctctggctgagcgagtcagc 181 ||||| |||||||| || |||||| | | |||||||| ||||| || ||| |||||||| Sbjct: 133848 caggtgtgggtgttcgctcttagtttactgggcctcatccctctcgccgagagagtcagc 133789 Query: 182 ttcctgacagag 193 ||||| |||||| Sbjct: 133788 ttcctcacagag 133777
>dbj|AB112770.1| Oryza sativa (japonica cultivar-group) OsCAX1b mRNA for cation/proton exchanger 1b, complet cds Length = 1848 Score = 99.6 bits (50), Expect = 6e-18 Identities = 173/214 (80%) Strand = Plus / Plus Query: 111 tccacttcggccaggtatgggtgtttgcgcttagtctgatcggcctcattcctctggctg 170 |||||||||| ||||| |||||||||| |||||| | ||||||||| ||||||| |||| Sbjct: 280 tccacttcggacaggtgtgggtgtttgtgcttagcttaatcggcctcgttcctcttgctg 339 Query: 171 agcgagtcagcttcctgacagagcagattgccctctacactggccccacaattggcggtc 230 ||||| |||||||||| || ||||||||||| | ||||| || || || | || || | Sbjct: 340 agcgactcagcttcctcaccgagcagattgcattttacaccggtcctactgtgggaggac 399 Query: 231 tcctgaacgcgacgtgcggcaacgccacggagctgatcatcgccatgttcgcgctggtgc 290 | ||||||||||| | || |||| |||||| |||| ||||| |||| |||||| Sbjct: 400 tactgaacgcgacatttgggaacgtgacggaggtgataatcgcgctgttggcgctgcgag 459 Query: 291 aagggaagatcgaggtggtgaaatgctcgctgct 324 |||| ||||| ||||||||||||||||| ||||| Sbjct: 460 aaggaaagattgaggtggtgaaatgctccctgct 493
>dbj|AK072134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129P04, full insert sequence Length = 1925 Score = 99.6 bits (50), Expect = 6e-18 Identities = 173/214 (80%) Strand = Plus / Plus Query: 111 tccacttcggccaggtatgggtgtttgcgcttagtctgatcggcctcattcctctggctg 170 |||||||||| ||||| |||||||||| |||||| | ||||||||| ||||||| |||| Sbjct: 426 tccacttcggacaggtgtgggtgtttgtgcttagcttaatcggcctcgttcctcttgctg 485 Query: 171 agcgagtcagcttcctgacagagcagattgccctctacactggccccacaattggcggtc 230 ||||| |||||||||| || ||||||||||| | ||||| || || || | || || | Sbjct: 486 agcgactcagcttcctcaccgagcagattgcattttacaccggtcctactgtgggaggac 545 Query: 231 tcctgaacgcgacgtgcggcaacgccacggagctgatcatcgccatgttcgcgctggtgc 290 | ||||||||||| | || |||| |||||| |||| ||||| |||| |||||| Sbjct: 546 tactgaacgcgacatttgggaacgtgacggaggtgataatcgcgctgttggcgctgcgag 605 Query: 291 aagggaagatcgaggtggtgaaatgctcgctgct 324 |||| ||||| ||||||||||||||||| ||||| Sbjct: 606 aaggaaagattgaggtggtgaaatgctccctgct 639 Score = 71.9 bits (36), Expect = 1e-09 Identities = 141/176 (80%) Strand = Plus / Plus Query: 149 atcggcctcattcctctggctgagcgagtcagcttcctgacagagcagattgccctctac 208 ||||||||| ||||||| ||||||||| |||||||||| || ||||||||||| | ||| Sbjct: 11 atcggcctcgttcctcttgctgagcgactcagcttcctcaccgagcagattgcattttac 70 Query: 209 actggccccacaattggcggtctcctgaacgcgacgtgcggcaacgccacggagctgatc 268 || || || || | || || || ||||||||||| | || |||| |||||| |||| Sbjct: 71 accggtcctactgtgggaggactactgaacgcgacatttgggaacgtgacggaggtgata 130 Query: 269 atcgccatgttcgcgctggtgcaagggaagatcgaggtggtgaaatgctcgctgct 324 ||||| |||| |||||| |||| ||||| ||||||||||||||||| ||||| Sbjct: 131 atcgcgctgttggcgctgcgagaaggaaagattgaggtggtgaaatgctccctgct 186
>dbj|AK069021.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170B16, full insert sequence Length = 2369 Score = 99.6 bits (50), Expect = 6e-18 Identities = 173/214 (80%) Strand = Plus / Plus Query: 111 tccacttcggccaggtatgggtgtttgcgcttagtctgatcggcctcattcctctggctg 170 |||||||||| ||||| |||||||||| |||||| | ||||||||| ||||||| |||| Sbjct: 787 tccacttcggacaggtgtgggtgtttgtgcttagcttaatcggcctcgttcctcttgctg 846 Query: 171 agcgagtcagcttcctgacagagcagattgccctctacactggccccacaattggcggtc 230 ||||| |||||||||| || ||||||||||| | ||||| || || || | || || | Sbjct: 847 agcgactcagcttcctcaccgagcagattgcattttacaccggtcctactgtgggaggac 906 Query: 231 tcctgaacgcgacgtgcggcaacgccacggagctgatcatcgccatgttcgcgctggtgc 290 | ||||||||||| | || |||| |||||| |||| ||||| |||| |||||| Sbjct: 907 tactgaacgcgacatttgggaacgtgacggaggtgataatcgcgctgttggcgctgcgag 966 Query: 291 aagggaagatcgaggtggtgaaatgctcgctgct 324 |||| ||||| ||||||||||||||||| ||||| Sbjct: 967 aaggaaagattgaggtggtgaaatgctccctgct 1000
>gb|AF256229.1|AF256229 Zea mays calcium/proton exchanger CAX1-like protein mRNA, complete cds Length = 1601 Score = 87.7 bits (44), Expect = 2e-14 Identities = 125/152 (82%) Strand = Plus / Plus Query: 50 ctcggcaccaagctcgccgtcctcttcgtcgccgtgccgctcgccgtcgtcgcgcagtgc 109 |||| ||||||||||||| |||||||| |||||| | ||||| ||| ||||| | Sbjct: 97 ctcgccaccaagctcgccctcctcttccccgccgttctactcgcgatcgccgcgcgaatc 156 Query: 110 ttccacttcggccaggtatgggtgtttgcgcttagtctgatcggcctcattcctctggct 169 |||||||||||||||| |||||| |||| |||||| ||||||| ||| ||||||| ||| Sbjct: 157 ttccacttcggccaggaatgggtctttgtgcttagcttgatcggtctcgttcctcttgct 216 Query: 170 gagcgagtcagcttcctgacagagcagattgc 201 |||||| | ||||| ||||| |||||| |||| Sbjct: 217 gagcgacttagctttctgactgagcaggttgc 248
>ref|NM_115045.2| Arabidopsis thaliana CAX3; cation:cation antiporter AT3G51860 (CAX3) mRNA, complete cds Length = 1771 Score = 50.1 bits (25), Expect = 0.005 Identities = 91/113 (80%) Strand = Plus / Plus Query: 161 cctctggctgagcgagtcagcttcctgacagagcagattgccctctacactggccccaca 220 ||||| ||||||||||| ||||| |||||||||| | || |||||||||| || ||| Sbjct: 353 cctctagctgagcgagttagctttttgacagagcaactagctttctacactggtccaaca 412 Query: 221 attggcggtctcctgaacgcgacgtgcggcaacgccacggagctgatcatcgc 273 | |||||| | |||||||||| || || ||||| || |||||||| ||||| Sbjct: 413 gtgggcggtttgttgaacgcgacttgtggaaacgcgacagagctgataatcgc 465
>gb|BT020374.1| Arabidopsis thaliana At3g51860 gene, complete cds Length = 1380 Score = 50.1 bits (25), Expect = 0.005 Identities = 91/113 (80%) Strand = Plus / Plus Query: 161 cctctggctgagcgagtcagcttcctgacagagcagattgccctctacactggccccaca 220 ||||| ||||||||||| ||||| |||||||||| | || |||||||||| || ||| Sbjct: 322 cctctagctgagcgagttagctttttgacagagcaactagctttctacactggtccaaca 381 Query: 221 attggcggtctcctgaacgcgacgtgcggcaacgccacggagctgatcatcgc 273 | |||||| | |||||||||| || || ||||| || |||||||| ||||| Sbjct: 382 gtgggcggtttgttgaacgcgacttgtggaaacgcgacagagctgataatcgc 434
>gb|AY058054.1| Arabidopsis thaliana At3g51860/ORF11 mRNA, complete cds Length = 1703 Score = 50.1 bits (25), Expect = 0.005 Identities = 91/113 (80%) Strand = Plus / Plus Query: 161 cctctggctgagcgagtcagcttcctgacagagcagattgccctctacactggccccaca 220 ||||| ||||||||||| ||||| |||||||||| | || |||||||||| || ||| Sbjct: 353 cctctagctgagcgagttagctttttgacagagcaactagctttctacactggtccaaca 412 Query: 221 attggcggtctcctgaacgcgacgtgcggcaacgccacggagctgatcatcgc 273 | |||||| | |||||||||| || || ||||| || |||||||| ||||| Sbjct: 413 gtgggcggtttgttgaacgcgacttgtggaaacgcgacagagctgataatcgc 465
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 48.1 bits (24), Expect = 0.018 Identities = 27/28 (96%) Strand = Plus / Plus Query: 247 cggcaacgccacggagctgatcatcgcc 274 |||||| ||||||||||||||||||||| Sbjct: 1596968 cggcaatgccacggagctgatcatcgcc 1596995
>dbj|AB112771.1| Oryza sativa (japonica cultivar-group) OsCAX1c mRNA for cation/proton exchanger 1c, complet cds Length = 1795 Score = 48.1 bits (24), Expect = 0.018 Identities = 51/60 (85%) Strand = Plus / Plus Query: 79 cgccgtgccgctcgccgtcgtcgcgcagtgcttccacttcggccaggtatgggtgtttgc 138 |||||||||||||||||||| ||| ||| | ||| | |||||| ||| ||||||||||| Sbjct: 303 cgccgtgccgctcgccgtcgccgccgagtccctccgcctcggccgggtttgggtgtttgc 362
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 48.1 bits (24), Expect = 0.018 Identities = 27/28 (96%) Strand = Plus / Minus Query: 247 cggcaacgccacggagctgatcatcgcc 274 |||||| ||||||||||||||||||||| Sbjct: 23915 cggcaatgccacggagctgatcatcgcc 23888
>ref|NM_201901.1| Arabidopsis thaliana CAX1; calcium:hydrogen antiporter AT2G38170 (CAX1) transcript variant AT2G38170.3 mRNA, complete cds Length = 1590 Score = 46.1 bits (23), Expect = 0.073 Identities = 29/31 (93%) Strand = Plus / Plus Query: 165 tggctgagcgagtcagcttcctgacagagca 195 ||||||||||||||||||| |||||||||| Sbjct: 424 tggctgagcgagtcagctttttgacagagca 454
>ref|NM_129373.2| Arabidopsis thaliana CAX1; calcium:hydrogen antiporter AT2G38170 (CAX1) transcript variant AT2G38170.1 mRNA, complete cds Length = 1836 Score = 46.1 bits (23), Expect = 0.073 Identities = 29/31 (93%) Strand = Plus / Plus Query: 165 tggctgagcgagtcagcttcctgacagagca 195 ||||||||||||||||||| |||||||||| Sbjct: 424 tggctgagcgagtcagctttttgacagagca 454
>ref|NM_179961.2| Arabidopsis thaliana CAX1; calcium:hydrogen antiporter AT2G38170 (CAX1) transcript variant AT2G38170.2 mRNA, complete cds Length = 1940 Score = 46.1 bits (23), Expect = 0.073 Identities = 29/31 (93%) Strand = Plus / Plus Query: 165 tggctgagcgagtcagcttcctgacagagca 195 ||||||||||||||||||| |||||||||| Sbjct: 424 tggctgagcgagtcagctttttgacagagca 454
>gb|AF461691.1|AF461691 Arabidopsis thaliana cation/proton antiporter CAX1 (CAX1) mRNA, complete cds Length = 1700 Score = 46.1 bits (23), Expect = 0.073 Identities = 29/31 (93%) Strand = Plus / Plus Query: 165 tggctgagcgagtcagcttcctgacagagca 195 ||||||||||||||||||| |||||||||| Sbjct: 361 tggctgagcgagtcagctttttgacagagca 391
>gb|AY660870.1| Capsella bursa-pastoris cax51 mRNA, complete cds Length = 1754 Score = 46.1 bits (23), Expect = 0.073 Identities = 29/31 (93%) Strand = Plus / Plus Query: 165 tggctgagcgagtcagcttcctgacagagca 195 ||||||| ||||||||||| ||||||||||| Sbjct: 342 tggctgaacgagtcagctttctgacagagca 372
>gb|AF372938.1|AF372938 Arabidopsis thaliana At2g38170/F16M14.10 mRNA, complete cds Length = 1786 Score = 46.1 bits (23), Expect = 0.073 Identities = 29/31 (93%) Strand = Plus / Plus Query: 165 tggctgagcgagtcagcttcctgacagagca 195 ||||||||||||||||||| |||||||||| Sbjct: 421 tggctgagcgagtcagctttttgacagagca 451
>emb|BX820189.1|CNS0AABV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS8ZD06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1707 Score = 46.1 bits (23), Expect = 0.073 Identities = 29/31 (93%) Strand = Plus / Plus Query: 165 tggctgagcgagtcagcttcctgacagagca 195 ||||||||||||||||||| |||||||||| Sbjct: 379 tggctgagcgagtcagctttttgacagagca 409
>gb|U57411.2|ATU57411 Arabidopsis thaliana high affinity calcium antiporter CAX1 mRNA, complete cds Length = 1394 Score = 46.1 bits (23), Expect = 0.073 Identities = 29/31 (93%) Strand = Plus / Plus Query: 165 tggctgagcgagtcagcttcctgacagagca 195 ||||||||||||||||||| |||||||||| Sbjct: 218 tggctgagcgagtcagctttttgacagagca 248
>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0030I14, complete sequence Length = 159035 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Minus Query: 291 aagggaagatcgaggtggtgaaatgctcgctgct 324 |||| ||||| ||||||||||||||||| ||||| Sbjct: 18776 aaggaaagattgaggtggtgaaatgctccctgct 18743
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 44.1 bits (22), Expect = 0.29 Identities = 28/30 (93%) Strand = Plus / Plus Query: 75 tcgtcgccgtgccgctcgccgtcgtcgcgc 104 ||||||||| |||||||||||||| ||||| Sbjct: 949056 tcgtcgccgcgccgctcgccgtcggcgcgc 949085
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 44.1 bits (22), Expect = 0.29 Identities = 28/30 (93%) Strand = Plus / Plus Query: 75 tcgtcgccgtgccgctcgccgtcgtcgcgc 104 ||||||||| |||||||||||||| ||||| Sbjct: 1990866 tcgtcgccgcgccgctcgccgtcggcgcgc 1990895
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 44.1 bits (22), Expect = 0.29 Identities = 28/30 (93%) Strand = Plus / Minus Query: 75 tcgtcgccgtgccgctcgccgtcgtcgcgc 104 ||||||||| |||||||||||||| ||||| Sbjct: 2385955 tcgtcgccgcgccgctcgccgtcggcgcgc 2385926
>gb|AC130727.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560F03, complete sequence Length = 45160 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Plus Query: 291 aagggaagatcgaggtggtgaaatgctcgctgct 324 |||| ||||| ||||||||||||||||| ||||| Sbjct: 22514 aaggaaagattgaggtggtgaaatgctccctgct 22547
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Minus Query: 291 aagggaagatcgaggtggtgaaatgctcgctgct 324 |||| ||||| ||||||||||||||||| ||||| Sbjct: 29370751 aaggaaagattgaggtggtgaaatgctccctgct 29370718 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 69 tcctcttcgtcgccgtgccgctcgccgt 96 |||||| ||||| ||||||||||||||| Sbjct: 23732999 tcctctccgtcggcgtgccgctcgccgt 23732972 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 10211732 cgccgtcctcttcgtcgccg 10211713 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 10049743 cgccgtcctcttcgtcgccg 10049724 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 1575957 cgccgtcctcttcgtcgccg 1575938 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 1571854 cgccgtcctcttcgtcgccg 1571835
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 73 cttcgtcgccgtgccgctcgccgtcg 98 |||||||||||||||||| ||||||| Sbjct: 5582913 cttcgtcgccgtgccgctggccgtcg 5582888
>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29 Length = 277000 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 ccaagctcgccgtcctcttcg 77 ||||||||||||||||||||| Sbjct: 85277 ccaagctcgccgtcctcttcg 85257
>gb|AC003028.3| Arabidopsis thaliana chromosome 2 clone F16M14 map ve018, complete sequence Length = 115359 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 165 tggctgagcgagtcagcttcctgacagag 193 ||||||||||||||||||| |||||||| Sbjct: 60290 tggctgagcgagtcagctttttgacagag 60262
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 76 cgtcgccgtgccgctcgccgtcgtcgcgc 104 |||||||||||||| |||||||| ||||| Sbjct: 487765 cgtcgccgtgccgcccgccgtcgccgcgc 487737
>gb|AF256228.1|AF256228 Arabidopsis thaliana calcium/proton exchanger CAX1-like protein mRNA, complete cds Length = 1692 Score = 42.1 bits (21), Expect = 1.1 Identities = 90/113 (79%) Strand = Plus / Plus Query: 161 cctctggctgagcgagtcagcttcctgacagagcagattgccctctacactggccccaca 220 ||||| ||||||||||| ||||| |||||||||| | || |||||||||| | ||| Sbjct: 350 cctctagctgagcgagttagctttttgacagagcaactagctttctacactggtcgaaca 409 Query: 221 attggcggtctcctgaacgcgacgtgcggcaacgccacggagctgatcatcgc 273 | |||||| | |||||||||| || || ||||| || |||||||| ||||| Sbjct: 410 gtgggcggtttgttgaacgcgacttgtggaaacgcgacagagctgataatcgc 462
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 76 cgtcgccgtgccgctcgccgtcgtcgcgc 104 |||||||||||||| |||||||| ||||| Sbjct: 487765 cgtcgccgtgccgcccgccgtcgccgcgc 487737
>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141089 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 76 cgtcgccgtgccgctcgccgtcgtcgcgc 104 |||||||||||||| |||||||| ||||| Sbjct: 59007 cgtcgccgtgccgcccgccgtcgccgcgc 59035
>dbj|AB012932.1| Vigna radiata mRNA for Ca2+/H+ exchanger, complete cds Length = 1938 Score = 42.1 bits (21), Expect = 1.1 Identities = 42/49 (85%) Strand = Plus / Plus Query: 198 ttgccctctacactggccccacaattggcggtctcctgaacgcgacgtg 246 ||||| |||||||||| || ||| |||| || || |||||||||||||| Sbjct: 476 ttgccttctacactggtcctacagttggaggacttctgaacgcgacgtg 524
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 cgtcgccgtgccgctcgccg 95 |||||||||||||||||||| Sbjct: 787438 cgtcgccgtgccgctcgccg 787457
>ref|XM_483220.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2055 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 cgccgtgccgctcgccgtcg 98 |||||||||||||||||||| Sbjct: 340 cgccgtgccgctcgccgtcg 359
>ref|XM_507285.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1506_F01.29 mRNA Length = 2120 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 cgccgtgccgctcgccgtcg 98 |||||||||||||||||||| Sbjct: 393 cgccgtgccgctcgccgtcg 412
>ref|XM_475448.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2004 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 69 tcctcttcgtcgccgtgccgctcgccgt 96 |||||| ||||| ||||||||||||||| Sbjct: 89 tcctctccgtcggcgtgccgctcgccgt 116
>ref|XM_465228.1| Oryza sativa (japonica cultivar-group), mRNA Length = 315 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 cgccgtgccgctcgccgtcg 98 |||||||||||||||||||| Sbjct: 258 cgccgtgccgctcgccgtcg 277
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 81 ccgtgccgctcgccgtcgtcgcgcagtg 108 ||||||||||||||| || ||||||||| Sbjct: 1227601 ccgtgccgctcgccggcggcgcgcagtg 1227628
>ref|NM_021867.2| Rattus norvegicus fibroblast growth factor 16 (Fgf16), mRNA Length = 1686 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 315 gctcgctgctcggctccgtgctct 338 |||||||||||||||||| ||||| Sbjct: 168 gctcgctgctcggctccgcgctct 145
>ref|XM_477579.1| Oryza sativa (japonica cultivar-group), mRNA Length = 189 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 100 cgccgtcctcttcgtcgccg 119
>gb|AC137612.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0022B03, complete sequence Length = 151814 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 35259 cgccgtcctcttcgtcgccg 35240
>gb|AC130598.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0056I11, complete sequence Length = 145796 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 28117 cgccgtcctcttcgtcgccg 28098 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 24014 cgccgtcctcttcgtcgccg 23995
>gb|AC137615.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0053F13, from chromosome 5, complete sequence Length = 149538 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 111826 cgccgtcctcttcgtcgccg 111807
>gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099O15, complete sequence Length = 137357 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 69 tcctcttcgtcgccgtgccgctcgccgt 96 |||||| ||||| ||||||||||||||| Sbjct: 122952 tcctctccgtcggcgtgccgctcgccgt 122925
>gb|AC093952.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1004_E02, complete sequence Length = 127642 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 69 tcctcttcgtcgccgtgccgctcgccgt 96 |||||| ||||| ||||||||||||||| Sbjct: 13872 tcctctccgtcggcgtgccgctcgccgt 13845
>gb|AF100171.1| Mus musculus myelodysplasia/myeloid leukemia factor 1 (Mlf1) mRNA, complete cds Length = 879 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ttcggcacgaggctgcgccc 20 |||||||||||||||||||| Sbjct: 4 ttcggcacgaggctgcgccc 23
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 17985827 cgccgtcctcttcgtcgccg 17985846
>gb|AC133861.5| Oryza sativa chromosome 3 BAC OSJNBb0031F05 genomic sequence, complete sequence Length = 131589 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 130374 cgccgtcctcttcgtcgccg 130355
>gb|AC099041.7| Oryza sativa chromosome 3 BAC OSJNBa0036E17 genomic sequence, complete sequence Length = 142896 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 36465 cgccgtcctcttcgtcgccg 36446
>emb|AL591787.1|SME591787 Sinorhizobium meliloti 1021 complete chromosome; segment 6/12 Length = 329100 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 agctcgccgtcctcttcgtc 79 |||||||||||||||||||| Sbjct: 146208 agctcgccgtcctcttcgtc 146189
>gb|AC134517.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1325D05, complete sequence Length = 136214 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 74070 cgccgtcctcttcgtcgccg 74051
>gb|AC109929.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0093J03, complete sequence Length = 200626 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 cgtcgccgtgccgctcgccg 95 |||||||||||||||||||| Sbjct: 160713 cgtcgccgtgccgctcgccg 160732
>emb|AL606606.3|OSJN00046 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0005B05, complete sequence Length = 149134 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 88441 cgccgtcctcttcgtcgccg 88460
>gb|AC130650.2| Homo sapiens chromosome 16 clone CTA-276F8, complete sequence Length = 215286 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 tgccctctacactggcccca 218 |||||||||||||||||||| Sbjct: 84184 tgccctctacactggcccca 84165
>gb|BC085738.1| Rattus norvegicus fibroblast growth factor 16, mRNA (cDNA clone MGC:93457 IMAGE:7189721), complete cds Length = 1686 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 315 gctcgctgctcggctccgtgctct 338 |||||||||||||||||| ||||| Sbjct: 168 gctcgctgctcggctccgcgctct 145
>dbj|AB197713.1| Oryza sativa (japonica cultivar-group) transposon iDart1-51 DNA, complete sequence, cultivar:Nipponbare Length = 3822 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 1633 cgccgtcctcttcgtcgccg 1652
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 6925570 cgccgtcctcttcgtcgccg 6925589 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 6433699 cgccgtcctcttcgtcgccg 6433718
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 cgtcgccgtgccgctcgccg 95 |||||||||||||||||||| Sbjct: 20853652 cgtcgccgtgccgctcgccg 20853671
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 9202793 cgccgtcctcttcgtcgccg 9202774
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 cgccgtgccgctcgccgtcg 98 |||||||||||||||||||| Sbjct: 18547227 cgccgtgccgctcgccgtcg 18547246
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 cgccgtgccgctcgccgtcg 98 |||||||||||||||||||| Sbjct: 24876403 cgccgtgccgctcgccgtcg 24876422
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 11642819 cgccgtcctcttcgtcgccg 11642838 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 6585505 cgccgtcctcttcgtcgccg 6585524 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 5204078 cgccgtcctcttcgtcgccg 5204097
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 12391518 cgccgtcctcttcgtcgccg 12391499
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 17979368 cgccgtcctcttcgtcgccg 17979387
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 cgccgtgccgctcgccgtcg 98 |||||||||||||||||||| Sbjct: 12431701 cgccgtgccgctcgccgtcg 12431720
>gb|AE004951.1| Pseudomonas aeruginosa PAO1, section 512 of 529 of the complete genome Length = 11555 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 cgctcgccgtcgtcgcgcag 106 |||||||||||||||||||| Sbjct: 2324 cgctcgccgtcgtcgcgcag 2343
>dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1715_A07 Length = 130907 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 70792 cgccgtcctcttcgtcgccg 70811
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 acggagctgatcatcgccat 276 |||||||||||||||||||| Sbjct: 3015092 acggagctgatcatcgccat 3015111
>dbj|AP003511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0578B12 Length = 151192 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 107978 cgccgtcctcttcgtcgccg 107959
>dbj|AP004891.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0705A04 Length = 182468 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 cgccgtgccgctcgccgtcg 98 |||||||||||||||||||| Sbjct: 111838 cgccgtgccgctcgccgtcg 111857
>dbj|AP006344.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0680C01 Length = 145580 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 978 cgccgtcctcttcgtcgccg 997
>dbj|AP004379.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0589E08 Length = 138416 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 2841 cgccgtcctcttcgtcgccg 2860
>dbj|AP004190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1506_F01 Length = 121202 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 cgccgtgccgctcgccgtcg 98 |||||||||||||||||||| Sbjct: 80849 cgccgtgccgctcgccgtcg 80868
>dbj|AK119300.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-E12, full insert sequence Length = 2693 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 cgccgtgccgctcgccgtcg 98 |||||||||||||||||||| Sbjct: 1975 cgccgtgccgctcgccgtcg 1956
>gb|U91322.1|HSU91322 Human chromosome 16p13 BAC clone CIT987SK-276F8 complete sequence Length = 215286 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 tgccctctacactggcccca 218 |||||||||||||||||||| Sbjct: 131103 tgccctctacactggcccca 131122
>dbj|AK105756.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D02, full insert sequence Length = 1959 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 cgccgtgccgctcgccgtcg 98 |||||||||||||||||||| Sbjct: 362 cgccgtgccgctcgccgtcg 381
>dbj|AK098863.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000P05, full insert sequence Length = 2058 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 cgccgtgccgctcgccgtcg 98 |||||||||||||||||||| Sbjct: 343 cgccgtgccgctcgccgtcg 362
>dbj|AK072183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151H08, full insert sequence Length = 2120 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 cgccgtgccgctcgccgtcg 98 |||||||||||||||||||| Sbjct: 393 cgccgtgccgctcgccgtcg 412
>dbj|AK067836.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123J03, full insert sequence Length = 1969 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 cgccgtgccgctcgccgtcg 98 |||||||||||||||||||| Sbjct: 360 cgccgtgccgctcgccgtcg 379
>dbj|AP005160.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0031C24 Length = 194111 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 97599 cgccgtcctcttcgtcgccg 97618
>emb|AL732332.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F03, complete sequence Length = 91539 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 12401 cgccgtcctcttcgtcgccg 12382
>gb|AC171012.3| Gallus gallus BAC clone CH261-128I7 from chromosome ul, complete sequence Length = 231142 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 agcttcctgacagagcagat 198 |||||||||||||||||||| Sbjct: 212649 agcttcctgacagagcagat 212668
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 tcgtcgccgtgccgctcgccgtcg 98 ||||||||| |||||||||||||| Sbjct: 3025827 tcgtcgccgcgccgctcgccgtcg 3025804
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 9207932 cgccgtcctcttcgtcgccg 9207913
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 cgtcgccgtgccgctcgccg 95 |||||||||||||||||||| Sbjct: 21163887 cgtcgccgtgccgctcgccg 21163906
>emb|AL662965.3|OSJN00167 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0040D17, complete sequence Length = 147548 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cgccgtcctcttcgtcgccg 83 |||||||||||||||||||| Sbjct: 95848 cgccgtcctcttcgtcgccg 95867
>emb|AL671893.7| Mouse DNA sequence from clone RP23-170G19 on chromosome X, complete sequence Length = 175057 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 315 gctcgctgctcggctccgtgctct 338 |||||||||||||||||| ||||| Sbjct: 127348 gctcgctgctcggctccgcgctct 127325 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,909,174 Number of Sequences: 3902068 Number of extensions: 1909174 Number of successful extensions: 38730 Number of sequences better than 10.0: 95 Number of HSP's better than 10.0 without gapping: 95 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 37282 Number of HSP's gapped (non-prelim): 1445 length of query: 339 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 317 effective length of database: 17,147,199,772 effective search space: 5435662327724 effective search space used: 5435662327724 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
