Clone Name | basd2f09 |
---|---|
Clone Library Name | barley_pub |
>emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein Length = 575 Score = 1130 bits (570), Expect = 0.0 Identities = 570/570 (100%) Strand = Plus / Plus Query: 12 gagcgagtgttgcacaaacaacatgtctgcctgtgtcatggcatctttggctctgaaacc 71 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5 gagcgagtgttgcacaaacaacatgtctgcctgtgtcatggcatctttggctctgaaacc 64 Query: 72 atcttcctctcctctgttacaacgatccaagcttggaggcgtgcgaccatcggcgaggcc 131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 65 atcttcctctcctctgttacaacgatccaagcttggaggcgtgcgaccatcggcgaggcc 124 Query: 132 gtcgttggtcatagtggccaagaaggcgaagaaggtccagactgcccaaccctacgggcc 191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125 gtcgttggtcatagtggccaagaaggcgaagaaggtccagactgcccaaccctacgggcc 184 Query: 192 tggtggtggagtggcgttcaaggaaggcgtcgatgcgtctggaagggtagccaaggggaa 251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 185 tggtggtggagtggcgttcaaggaaggcgtcgatgcgtctggaagggtagccaaggggaa 244 Query: 252 gggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatata 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 gggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatata 304 Query: 312 cacaccagaagagtggtctccaagtggcgacgtttatgttggaggaaagacggggctgtt 371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 305 cacaccagaagagtggtctccaagtggcgacgtttatgttggaggaaagacggggctgtt 364 Query: 372 tctctgggcagtgactcttgctggaattctgctgggcggtgctcttcttgtctacagtac 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 365 tctctgggcagtgactcttgctggaattctgctgggcggtgctcttcttgtctacagtac 424 Query: 432 tagcgccttggcttcctgaagcctatgtgcagcaaaccaagctatgcaccaaacgatgtg 491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 425 tagcgccttggcttcctgaagcctatgtgcagcaaaccaagctatgcaccaaacgatgtg 484 Query: 492 tataatagtgcggattataaccgtcaggacatatgtaatggatacaaatatcactacccg 551 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 485 tataatagtgcggattataaccgtcaggacatatgtaatggatacaaatatcactacccg 544 Query: 552 caaatcagtaaatatccttaattaattact 581 |||||||||||||||||||||||||||||| Sbjct: 545 caaatcagtaaatatccttaattaattact 574
>emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMWG0658 Length = 377 Score = 704 bits (355), Expect = 0.0 Identities = 371/375 (98%), Gaps = 2/375 (0%) Strand = Plus / Plus Query: 23 gcacaaacaacatgtctgcctgtgtcatggcatctttggctctgaaaccatcttcctctc 82 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3 gcacaaacaacatgtctgcctgtgtcatggcatctttggctctgaaaccatcttcctctc 62 Query: 83 ctctgttacaacgatccaagcttggaggcgtgcgaccatcggcgaggccgtcgttggtca 142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 63 ctctgttacaacgatccaagcttggaggcgtgcgaccatcggcgaggccgtcgttggtca 122 Query: 143 tagtggccaagaaggcgaagaaggtccagactgcccaaccctacgggcctggtggtggag 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123 tagtggccaagaaggcgaagaaggtccagactgcccaaccctacgggcctggtggtggag 182 Query: 203 tggcgttcaaggaaggcgtcgatgcgtc-tggaagggtagccaaggggaagggtgtttac 261 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 183 tggcgttcaaggaaggcgtcgatgcgtcttggaagggtagccaaggggaagggtgtttac 242 Query: 262 cagtttg-ccgacaagtatggagcaaatgttgatgggtacagccctatatacacaccaga 320 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 243 cagtthdnccgacaagtatggagcaaatgttgatgggtacagccctatatacacaccaga 302 Query: 321 agagtggtctccaagtggcgacgtttatgttggaggaaagacggggctgtttctctgggc 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 303 agagtggtctccaagtggcgacgtttatgttggaggaaagacggggctgtttctctgggc 362 Query: 381 agtgactcttgctgg 395 ||||||||||||||| Sbjct: 363 agtgactcttgctgg 377
>emb|AJ234420.1|HVU234420 Hordeum vulgare partial mRNA; clone cMWG0681 Length = 247 Score = 486 bits (245), Expect = e-134 Identities = 245/245 (100%) Strand = Plus / Plus Query: 23 gcacaaacaacatgtctgcctgtgtcatggcatctttggctctgaaaccatcttcctctc 82 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3 gcacaaacaacatgtctgcctgtgtcatggcatctttggctctgaaaccatcttcctctc 62 Query: 83 ctctgttacaacgatccaagcttggaggcgtgcgaccatcggcgaggccgtcgttggtca 142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 63 ctctgttacaacgatccaagcttggaggcgtgcgaccatcggcgaggccgtcgttggtca 122 Query: 143 tagtggccaagaaggcgaagaaggtccagactgcccaaccctacgggcctggtggtggag 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123 tagtggccaagaaggcgaagaaggtccagactgcccaaccctacgggcctggtggtggag 182 Query: 203 tggcgttcaaggaaggcgtcgatgcgtctggaagggtagccaaggggaagggtgtttacc 262 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183 tggcgttcaaggaaggcgtcgatgcgtctggaagggtagccaaggggaagggtgtttacc 242 Query: 263 agttt 267 ||||| Sbjct: 243 agttt 247
>ref|XM_476619.1| Oryza sativa (japonica cultivar-group), mRNA Length = 620 Score = 256 bits (129), Expect = 7e-65 Identities = 258/301 (85%) Strand = Plus / Plus Query: 127 aggccgtcgttggtcatagtggccaagaaggcgaagaaggtccagactgcccaaccctac 186 ||||| || ||| |||||||||||||||| || |||||| | ||||| |||| ||||| Sbjct: 160 aggccatctttgatcatagtggccaagaaagcaaagaagattcagacatcccagccctat 219 Query: 187 gggcctggtggtggagtggcgttcaaggaaggcgtcgatgcgtctggaagggtagccaag 246 ||||||| ||| ||||||| |||||||||||| || ||||| |||||||||||||||||| Sbjct: 220 gggcctgctggaggagtggtgttcaaggaaggtgttgatgcatctggaagggtagccaag 279 Query: 247 gggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccct 306 || |||||| ||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 280 ggaaagggtctttaccagttttccaacaagtatggagcaaatgttgatgggtacagccca 339 Query: 307 atatacacaccagaagagtggtctccaagtggcgacgtttatgttggaggaaagacgggg 366 ||||| || |||||||| |||||| ||| ||| || || ||||||||||||||| | || Sbjct: 340 atatataccccagaagaatggtcttcaactggtgatgtctatgttggaggaaaggcaggt 399 Query: 367 ctgtttctctgggcagtgactcttgctggaattctgctgggcggtgctcttcttgtctac 426 | ||||||||||| | ||||||||||||||||| | ||||| ||| ||||||||||| Sbjct: 400 ttacttctctgggcaatcactcttgctggaattctagttggcggcgctattcttgtctac 459 Query: 427 a 427 | Sbjct: 460 a 460 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 31 aacatgtctgcctgtgtcatggcatctttggctctgaaaccatct 75 |||||| |||||| ||||||||| ||| ||||||||||||||||| Sbjct: 64 aacatggctgcctctgtcatggcttctctggctctgaaaccatct 108
>dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C07, full insert sequence Length = 620 Score = 256 bits (129), Expect = 7e-65 Identities = 258/301 (85%) Strand = Plus / Plus Query: 127 aggccgtcgttggtcatagtggccaagaaggcgaagaaggtccagactgcccaaccctac 186 ||||| || ||| |||||||||||||||| || |||||| | ||||| |||| ||||| Sbjct: 160 aggccatctttgatcatagtggccaagaaagcaaagaagattcagacatcccagccctat 219 Query: 187 gggcctggtggtggagtggcgttcaaggaaggcgtcgatgcgtctggaagggtagccaag 246 ||||||| ||| ||||||| |||||||||||| || ||||| |||||||||||||||||| Sbjct: 220 gggcctgctggaggagtggtgttcaaggaaggtgttgatgcatctggaagggtagccaag 279 Query: 247 gggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccct 306 || |||||| ||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 280 ggaaagggtctttaccagttttccaacaagtatggagcaaatgttgatgggtacagccca 339 Query: 307 atatacacaccagaagagtggtctccaagtggcgacgtttatgttggaggaaagacgggg 366 ||||| || |||||||| |||||| ||| ||| || || ||||||||||||||| | || Sbjct: 340 atatataccccagaagaatggtcttcaactggtgatgtctatgttggaggaaaggcaggt 399 Query: 367 ctgtttctctgggcagtgactcttgctggaattctgctgggcggtgctcttcttgtctac 426 | ||||||||||| | ||||||||||||||||| | ||||| ||| ||||||||||| Sbjct: 400 ttacttctctgggcaatcactcttgctggaattctagttggcggcgctattcttgtctac 459 Query: 427 a 427 | Sbjct: 460 a 460 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 31 aacatgtctgcctgtgtcatggcatctttggctctgaaaccatct 75 |||||| |||||| ||||||||| ||| ||||||||||||||||| Sbjct: 64 aacatggctgcctctgtcatggcttctctggctctgaaaccatct 108
>dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169L11, full insert sequence Length = 777 Score = 248 bits (125), Expect = 2e-62 Identities = 257/301 (85%) Strand = Plus / Plus Query: 127 aggccgtcgttggtcatagtggccaagaaggcgaagaaggtccagactgcccaaccctac 186 ||||| || ||| |||||||||||||||| || |||||| | ||||| |||| ||||| Sbjct: 161 aggccatctttgatcatagtggccaagaaagcaaagaagattcagacatcccagccctat 220 Query: 187 gggcctggtggtggagtggcgttcaaggaaggcgtcgatgcgtctggaagggtagccaag 246 ||||||| ||| ||||||| |||||||||||| || ||||| |||||||||||||||||| Sbjct: 221 gggcctgctggaggagtggtgttcaaggaaggtgttgatgcatctggaagggtagccaag 280 Query: 247 gggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccct 306 || |||||| ||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 281 ggaaagggtctttaccagttttccaacaagtatggagcaaatgttgatgggtacagccca 340 Query: 307 atatacacaccagaagagtggtctccaagtggcgacgtttatgttggaggaaagacgggg 366 ||||| || |||||||| |||||| ||| ||| || || ||||||||||||||| | || Sbjct: 341 atatataccccagaagaatggtcttcaactggtgatgtctatgttggaggaaaggcaggt 400 Query: 367 ctgtttctctgggcagtgactcttgctggaattctgctgggcggtgctcttcttgtctac 426 | ||||||||||| | ||||||||||||| ||| | ||||| ||| ||||||||||| Sbjct: 401 ttacttctctgggcaatcactcttgctggaagtctagttggcggcgctattcttgtctac 460 Query: 427 a 427 | Sbjct: 461 a 461 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 31 aacatgtctgcctgtgtcatggcatctttggctctgaaaccatct 75 |||||| |||||| ||||||||| ||| ||||||||||||||||| Sbjct: 65 aacatggctgcctctgtcatggcttctctggctctgaaaccatct 109
>ref|XM_476620.1| Oryza sativa (japonica cultivar-group), mRNA Length = 405 Score = 190 bits (96), Expect = 4e-45 Identities = 177/204 (86%) Strand = Plus / Plus Query: 243 caaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 302 ||||||||| || || |||||||||||| |||||||||||| ||||||||||| ||||| Sbjct: 198 caaggggaaaggggtctaccagtttgccagcaagtatggagctaatgttgatggatacag 257 Query: 303 ccctatatacacaccagaagagtggtctccaagtggcgacgtttatgttggaggaaagac 362 ||| ||||| | ||||| || ||||| |||||||| || |||||| |||||||||||| Sbjct: 258 cccaatatataacccagaggaatggtcaccaagtggtgatgtttatactggaggaaagac 317 Query: 363 ggggctgtttctctgggcagtgactcttgctggaattctgctgggcggtgctcttcttgt 422 ||| |||| ||||||||||| |||||| ||||||||||||||| |||||||||||||| Sbjct: 318 agggttgttgctctgggcagtcactctttctggaattctgctggctggtgctcttcttgt 377 Query: 423 ctacagtactagcgccttggcttc 446 ||||| |||||| ||||||||||| Sbjct: 378 ctacaatactagtgccttggcttc 401
>gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (PsbR) mRNA, complete cds Length = 698 Score = 121 bits (61), Expect = 3e-24 Identities = 154/185 (83%) Strand = Plus / Plus Query: 244 aaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagc 303 ||||| |||||||| ||||| |||| ||||| ||||| |||||||||||||| |||||| Sbjct: 290 aagggaaagggtgtctaccaatttgtggacaaatatggtgcaaatgttgatggctacagc 349 Query: 304 cctatatacacaccagaagagtggtctccaagtggcgacgtttatgttggaggaaagacg 363 || || ||| ||||||| || |||||||| ||||| || |||||||||||||||| || Sbjct: 350 ccgatctactcaccagacgaatggtctcctagtggtgatgtttatgttggaggaaccact 409 Query: 364 gggctgtttctctgggcagtgactcttgctggaattctgctgggcggtgctcttcttgtc 423 || || || |||||||| | |||||||||||| ||||| || |||||||||||||| Sbjct: 410 ggtctcattgtctgggcaatcactcttgctggacttctgggtggaggtgctcttcttgtg 469 Query: 424 tacag 428 ||||| Sbjct: 470 tacag 474
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 119 bits (60), Expect = 1e-23 Identities = 90/100 (90%) Strand = Plus / Plus Query: 354 aggaaagacggggctgtttctctgggcagtgactcttgctggaattctgctgggcggtgc 413 ||||||||| ||| |||| ||||||||||| |||||| ||||||||||||||| ||||| Sbjct: 2490023 aggaaagacagggttgttgctctgggcagtcactctttctggaattctgctggctggtgc 2490082 Query: 414 tcttcttgtctacagtactagcgccttggcttcctgaagc 453 |||||||||||||| |||||| ||||||||||| |||||| Sbjct: 2490083 tcttcttgtctacaatactagtgccttggcttcttgaagc 2490122 Score = 83.8 bits (42), Expect = 6e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 245 aggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 302 |||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 2487079 agggaaagggtctttaccagttttccaacaagtatggagcaaatgttgatgggtacag 2487136 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 187 gggcctggtggtggagtggcgttcaaggaaggcgtcgatgcgtctggaagggtagccaag 246 ||||||| ||| ||||||| |||||||||||| || ||||| |||||||||||||||||| Sbjct: 2486935 gggcctgctggaggagtggtgttcaaggaaggtgttgatgcatctggaagggtagccaag 2486994 Query: 247 g 247 | Sbjct: 2486995 g 2486995 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 245 aggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 302 ||||||| || || |||||||||||| |||||||||||| ||||||||||| ||||| Sbjct: 2489696 aggggaaaggggtctaccagtttgccagcaagtatggagctaatgttgatggatacag 2489753 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 371 ttctctgggcagtgactcttgctggaattctgctgggcggtgctcttcttgtctaca 427 ||||||||||| | ||||||||||||||||| | ||||| ||| |||||||||||| Sbjct: 2487572 ttctctgggcaatcactcttgctggaattctagttggcggcgctattcttgtctaca 2487628 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 31 aacatgtctgcctgtgtcatggcatctttggctctgaaaccatct 75 |||||| |||||| ||||||||| ||| ||||||||||||||||| Sbjct: 2486553 aacatggctgcctctgtcatggcttctctggctctgaaaccatct 2486597 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Plus Query: 298 tacagccctatatacacaccagaagagtggtctccaagtggcgacgtttatgttggagg 356 |||||||| ||||| || |||||||| |||||| ||| ||| || || ||||||||||| Sbjct: 2487375 tacagcccaatatataccccagaagaatggtcttcaactggtgatgtctatgttggagg 2487433
>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0022E03 Length = 163032 Score = 119 bits (60), Expect = 1e-23 Identities = 90/100 (90%) Strand = Plus / Plus Query: 354 aggaaagacggggctgtttctctgggcagtgactcttgctggaattctgctgggcggtgc 413 ||||||||| ||| |||| ||||||||||| |||||| ||||||||||||||| ||||| Sbjct: 55003 aggaaagacagggttgttgctctgggcagtcactctttctggaattctgctggctggtgc 55062 Query: 414 tcttcttgtctacagtactagcgccttggcttcctgaagc 453 |||||||||||||| |||||| ||||||||||| |||||| Sbjct: 55063 tcttcttgtctacaatactagtgccttggcttcttgaagc 55102 Score = 83.8 bits (42), Expect = 6e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 245 aggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 302 |||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 52059 agggaaagggtctttaccagttttccaacaagtatggagcaaatgttgatgggtacag 52116 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 187 gggcctggtggtggagtggcgttcaaggaaggcgtcgatgcgtctggaagggtagccaag 246 ||||||| ||| ||||||| |||||||||||| || ||||| |||||||||||||||||| Sbjct: 51915 gggcctgctggaggagtggtgttcaaggaaggtgttgatgcatctggaagggtagccaag 51974 Query: 247 g 247 | Sbjct: 51975 g 51975 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 245 aggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 302 ||||||| || || |||||||||||| |||||||||||| ||||||||||| ||||| Sbjct: 54676 aggggaaaggggtctaccagtttgccagcaagtatggagctaatgttgatggatacag 54733 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 371 ttctctgggcagtgactcttgctggaattctgctgggcggtgctcttcttgtctaca 427 ||||||||||| | ||||||||||||||||| | ||||| ||| |||||||||||| Sbjct: 52552 ttctctgggcaatcactcttgctggaattctagttggcggcgctattcttgtctaca 52608 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 31 aacatgtctgcctgtgtcatggcatctttggctctgaaaccatct 75 |||||| |||||| ||||||||| ||| ||||||||||||||||| Sbjct: 51533 aacatggctgcctctgtcatggcttctctggctctgaaaccatct 51577 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Plus Query: 298 tacagccctatatacacaccagaagagtggtctccaagtggcgacgtttatgttggagg 356 |||||||| ||||| || |||||||| |||||| ||| ||| || || ||||||||||| Sbjct: 52355 tacagcccaatatataccccagaagaatggtcttcaactggtgatgtctatgttggagg 52413
>emb|X70088.1|NTNTPII10 N. tabacum mRNA for NtpII10 Length = 639 Score = 89.7 bits (45), Expect = 1e-14 Identities = 96/113 (84%) Strand = Plus / Plus Query: 244 aaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagc 303 ||||| |||||||||||||| || | ||||| |||||||||||||||||||| |||||| Sbjct: 230 aagggaaagggtgtttaccaattcgttgacaaatatggagcaaatgttgatggatacagc 289 Query: 304 cctatatacacaccagaagagtggtctccaagtggcgacgtttatgttggagg 356 || || |||| |||| || |||||||||||||| || || ||||||||||| Sbjct: 290 cccatctacaacacagatgactggtctccaagtggtgatgtctatgttggagg 342
>gb|AY310792.1| Nicotiana benthamiana clone 10-302 unknown mRNA Length = 438 Score = 85.7 bits (43), Expect = 2e-13 Identities = 97/115 (84%) Strand = Plus / Plus Query: 242 ccaaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtaca 301 ||||||| |||||||||||||| || | ||||| |||||||||||||||||||| |||| Sbjct: 83 ccaagggaaagggtgtttaccaattcgttgacaaatatggagcaaatgttgatggataca 142 Query: 302 gccctatatacacaccagaagagtggtctccaagtggcgacgtttatgttggagg 356 |||| || |||| |||| || ||||||||||| || || || ||||||||||| Sbjct: 143 gccccatctacaacacagatgactggtctccaagcggtgatgtctatgttggagg 197
>gb|AY310790.1| Nicotiana benthamiana clone 10-284 unknown mRNA Length = 373 Score = 83.8 bits (42), Expect = 6e-13 Identities = 96/115 (83%) Strand = Plus / Plus Query: 242 ccaaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtaca 301 ||||||| |||||||||||||| || | ||||| |||||||||||||||||||| |||| Sbjct: 19 ccaagggaaagggtgtttaccaattngttgacaaatatggagcaaatgttgatggataca 78 Query: 302 gccctatatacacaccagaagagtggtctccaagtggcgacgtttatgttggagg 356 |||| || |||| |||| || |||||| |||| || || || ||||||||||| Sbjct: 79 gccccatctacaacacagatgactggtctncaagcggtgatgtntatgttggagg 133
>dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1470_H06 Length = 62794 Score = 83.8 bits (42), Expect = 6e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 245 aggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 302 |||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 60826 agggaaagggtctttaccagttttccaacaagtatggagcaaatgttgatgggtacag 60883 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 187 gggcctggtggtggagtggcgttcaaggaaggcgtcgatgcgtctggaagggtagccaag 246 ||||||| ||| ||||||| |||||||||||| || ||||| |||||||||||||||||| Sbjct: 60682 gggcctgctggaggagtggtgttcaaggaaggtgttgatgcatctggaagggtagccaag 60741 Query: 247 g 247 | Sbjct: 60742 g 60742 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 371 ttctctgggcagtgactcttgctggaattctgctgggcggtgctcttcttgtctaca 427 ||||||||||| | ||||||||||||||||| | ||||| ||| |||||||||||| Sbjct: 61319 ttctctgggcaatcactcttgctggaattctagttggcggcgctattcttgtctaca 61375 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 31 aacatgtctgcctgtgtcatggcatctttggctctgaaaccatct 75 |||||| |||||| ||||||||| ||| ||||||||||||||||| Sbjct: 60300 aacatggctgcctctgtcatggcttctctggctctgaaaccatct 60344 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Plus Query: 298 tacagccctatatacacaccagaagagtggtctccaagtggcgacgtttatgttggagg 356 |||||||| ||||| || |||||||| |||||| ||| ||| || || ||||||||||| Sbjct: 61122 tacagcccaatatataccccagaagaatggtcttcaactggtgatgtctatgttggagg 61180
>emb|X04401.1|STLS1R Potato mRNA for light inducible tissue-specific ST-LS1 gene Length = 560 Score = 77.8 bits (39), Expect = 4e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 242 ccaaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtaca 301 ||||||| |||||||| ||||| | || ||||| |||||||| ||||||||||| |||| Sbjct: 209 ccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggataca 268 Query: 302 gccctatatacacaccagaagagtggtctccaagtggcgacgtttatgttggagg 356 | || || |||| |||| ||||||||||||||||| || || ||||||||||| Sbjct: 269 gtcccatctacaacacagatgagtggtctccaagtggtgatgtctatgttggagg 323
>gb|AY348557.1| Trifolium pratense 10 kDa photosystem II polypeptide mRNA, complete cds Length = 584 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 244 aaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagc 303 ||||| ||||||||||||||||||| ||||| ||||| || ||||||||||| ||||| Sbjct: 212 aagggaaagggtgtttaccagtttgtggacaaatatggtgctaatgttgatggatacagt 271 Query: 304 cctat 308 ||||| Sbjct: 272 cctat 276
>emb|Z75521.1|LESEND34 L.esculentum mRNA for photosystem II 10 kD protein Length = 540 Score = 61.9 bits (31), Expect = 2e-06 Identities = 94/115 (81%) Strand = Plus / Plus Query: 242 ccaaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtaca 301 ||||||| |||||||| ||||| | || ||||| |||||||| ||||||||||| |||| Sbjct: 186 ccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggataca 245 Query: 302 gccctatatacacaccagaagagtggtctccaagtggcgacgtttatgttggagg 356 | || || |||| | || || |||||||||||||| || || ||||||||||| Sbjct: 246 gtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggagg 300
>gb|J03887.1|SPIPSBIA Spinach psbI gene encoding the 10kd polypeptide of photosystem II, complete cds Length = 590 Score = 61.9 bits (31), Expect = 2e-06 Identities = 75/87 (86%), Gaps = 2/87 (2%) Strand = Plus / Plus Query: 217 ggcgtcgatgcgtctggaagggtagccaagggg-aagggtgtttaccagtttgccgacaa 275 ||||| ||| ||||||||||| |||||| ||| |||||||||||||| |||| ||||| Sbjct: 207 ggcgttgattcgtctggaagga-agccaacgggcaagggtgtttaccaatttgttgacaa 265 Query: 276 gtatggagcaaatgttgatgggtacag 302 |||||| || ||||||||||| ||||| Sbjct: 266 gtatggtgccaatgttgatggttacag 292
>emb|X95987.1|LEPSIIPRE L.esculentum mRNA for 10kDa polypeptide precursor of photosystem II Length = 632 Score = 54.0 bits (27), Expect = 5e-04 Identities = 93/115 (80%) Strand = Plus / Plus Query: 242 ccaaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtaca 301 ||||||| |||||||| ||||| | || ||||| ||||| || ||||||||||| |||| Sbjct: 209 ccaagggaaagggtgtgtaccaatatgttgacaaatatggggctaatgttgatggataca 268 Query: 302 gccctatatacacaccagaagagtggtctccaagtggcgacgtttatgttggagg 356 | || || |||| | || || |||||||||||||| || || ||||||||||| Sbjct: 269 gtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggagg 323
>dbj|AP006696.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT17N21, TM0403, complete sequence Length = 97807 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 245 aggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 302 |||| |||||||||||||||| || |||||||| || || ||||||||||| ||||| Sbjct: 84296 agggaaagggtgtttaccagtatgtggacaagtacggtgctaatgttgatggatacag 84239
>dbj|AP006396.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT26P21, TM0279b, complete sequence Length = 28275 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 245 aggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 302 |||| |||||||||||||||| || |||||||| || || ||||||||||| ||||| Sbjct: 14668 agggaaagggtgtttaccagtatgtggacaagtacggtgctaatgttgatggatacag 14725
>emb|X04753.1|STLS1G Potato light-inducible tissue-specific ST-LS1 gene Length = 3699 Score = 48.1 bits (24), Expect = 0.033 Identities = 36/40 (90%) Strand = Plus / Plus Query: 317 cagaagagtggtctccaagtggcgacgtttatgttggagg 356 |||| ||||||||||||||||| || || ||||||||||| Sbjct: 3003 cagatgagtggtctccaagtggtgatgtctatgttggagg 3042 Score = 44.1 bits (22), Expect = 0.51 Identities = 49/58 (84%) Strand = Plus / Plus Query: 245 aggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 302 |||| |||||||| ||||| | || ||||| |||||||| ||||||||||| ||||| Sbjct: 2835 agggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacag 2892
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 114 gcgaccatcggcgaggccgtcg 135 |||||||||||||||||||||| Sbjct: 577556 gcgaccatcggcgaggccgtcg 577535
>dbj|AB090880.1| Aster tripolium mRNA for thiol protease, complete cds Length = 910 Score = 44.1 bits (22), Expect = 0.51 Identities = 34/38 (89%) Strand = Plus / Plus Query: 244 aaggggaagggtgtttaccagtttgccgacaagtatgg 281 |||||||||||||| ||||| |||| ||||||||||| Sbjct: 318 aaggggaagggtgtctaccaatttgttgacaagtatgg 355
>ref|NM_106555.2| Arabidopsis thaliana unknown protein AT1G79040 mRNA, complete cds Length = 647 Score = 42.1 bits (21), Expect = 2.0 Identities = 51/61 (83%) Strand = Plus / Plus Query: 253 ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 312 ||||||||| ||| | ||||||||||||||| || || ||||| ||||| ||||| ||| Sbjct: 293 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 352 Query: 313 a 313 | Sbjct: 353 a 353
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 tggccaagaaggcgaagaagg 166 ||||||||||||||||||||| Sbjct: 2184178 tggccaagaaggcgaagaagg 2184158
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 tggccaagaaggcgaagaagg 166 ||||||||||||||||||||| Sbjct: 2523534 tggccaagaaggcgaagaagg 2523514
>gb|AY096544.1| Arabidopsis thaliana putative photosystem II polypeptide (At1g79040) mRNA, complete cds Length = 454 Score = 42.1 bits (21), Expect = 2.0 Identities = 51/61 (83%) Strand = Plus / Plus Query: 253 ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 312 ||||||||| ||| | ||||||||||||||| || || ||||| ||||| ||||| ||| Sbjct: 226 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 285 Query: 313 a 313 | Sbjct: 286 a 286
>gb|AY070103.1| Arabidopsis thaliana putative photosystem II polypeptide protein (At1g79040) mRNA, complete cds Length = 645 Score = 42.1 bits (21), Expect = 2.0 Identities = 51/61 (83%) Strand = Plus / Plus Query: 253 ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 312 ||||||||| ||| | ||||||||||||||| || || ||||| ||||| ||||| ||| Sbjct: 276 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 335 Query: 313 a 313 | Sbjct: 336 a 336
>gb|AF035554.1|AF035554 Pisaster ochraceus protein kinase C-related kinase (PRK2) mRNA, partial cds Length = 2892 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 ccaagtggcgacgtttatgtt 351 ||||||||||||||||||||| Sbjct: 1485 ccaagtggcgacgtttatgtt 1465
>emb|BX815694.1|CNS0ABGL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS85ZA04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 580 Score = 42.1 bits (21), Expect = 2.0 Identities = 51/61 (83%) Strand = Plus / Plus Query: 253 ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 312 ||||||||| ||| | ||||||||||||||| || || ||||| ||||| ||||| ||| Sbjct: 259 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 318 Query: 313 a 313 | Sbjct: 319 a 319
>emb|BX813377.1|CNS0AC7S Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB13ZE07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 580 Score = 42.1 bits (21), Expect = 2.0 Identities = 51/61 (83%) Strand = Plus / Plus Query: 253 ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 312 ||||||||| ||| | ||||||||||||||| || || ||||| ||||| ||||| ||| Sbjct: 259 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 318 Query: 313 a 313 | Sbjct: 319 a 319
>emb|BX813545.1|CNS0AC1I Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB23ZD11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 576 Score = 42.1 bits (21), Expect = 2.0 Identities = 51/61 (83%) Strand = Plus / Plus Query: 253 ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 312 ||||||||| ||| | ||||||||||||||| || || ||||| ||||| ||||| ||| Sbjct: 255 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 314 Query: 313 a 313 | Sbjct: 315 a 315
>emb|BX815389.1|CNS0ABFG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS56ZH04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 580 Score = 42.1 bits (21), Expect = 2.0 Identities = 51/61 (83%) Strand = Plus / Plus Query: 253 ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 312 ||||||||| ||| | ||||||||||||||| || || ||||| ||||| ||||| ||| Sbjct: 259 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 318 Query: 313 a 313 | Sbjct: 319 a 319
>emb|BX818517.1|CNS0AB2P Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL83ZE09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 579 Score = 42.1 bits (21), Expect = 2.0 Identities = 51/61 (83%) Strand = Plus / Plus Query: 253 ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 312 ||||||||| ||| | ||||||||||||||| || || ||||| ||||| ||||| ||| Sbjct: 258 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 317 Query: 313 a 313 | Sbjct: 318 a 318
>emb|BX817507.1|CNS0AAZC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL27ZF07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 588 Score = 42.1 bits (21), Expect = 2.0 Identities = 51/61 (83%) Strand = Plus / Plus Query: 253 ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 312 ||||||||| ||| | ||||||||||||||| || || ||||| ||||| ||||| ||| Sbjct: 261 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 320 Query: 313 a 313 | Sbjct: 321 a 321
>gb|AY084512.1| Arabidopsis thaliana clone 110067 mRNA, complete sequence Length = 611 Score = 42.1 bits (21), Expect = 2.0 Identities = 51/61 (83%) Strand = Plus / Plus Query: 253 ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 312 ||||||||| ||| | ||||||||||||||| || || ||||| ||||| ||||| ||| Sbjct: 293 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 352 Query: 313 a 313 | Sbjct: 353 a 353
>emb|AJ293729.1|ATH293729 Arabidopsis thaliana partial mRNA for 60S ribosomal protein L24 (RL24 gene) Length = 1310 Score = 42.1 bits (21), Expect = 2.0 Identities = 51/61 (83%) Strand = Plus / Plus Query: 253 ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 312 ||||||||| ||| | ||||||||||||||| || || ||||| ||||| ||||| ||| Sbjct: 968 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 1027 Query: 313 a 313 | Sbjct: 1028 a 1028
>gb|L31936.1|BNABIF11G Brassica campestris ssp. pekinensis (clone bif11) photosystem II 10kDa polypeptide mRNA, complete cds Length = 551 Score = 42.1 bits (21), Expect = 2.0 Identities = 42/49 (85%) Strand = Plus / Plus Query: 265 tttgccgacaagtatggagcaaatgttgatgggtacagccctatataca 313 |||| |||||||||||| || || |||||||| ||||| ||||| |||| Sbjct: 253 tttgtcgacaagtatggtgcgaacgttgatggatacagtcctatctaca 301
>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome Length = 2201561 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 gtatggagcaaatgttgatg 295 |||||||||||||||||||| Sbjct: 1176145 gtatggagcaaatgttgatg 1176164
>gb|AC132830.12| Mus musculus chromosome 1, clone RP24-566B6, complete sequence Length = 205300 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 atatacacaccagaagagtg 326 |||||||||||||||||||| Sbjct: 143573 atatacacaccagaagagtg 143554
>gb|AC113547.27| Mus musculus chromosome 12, clone RP23-263J2, complete sequence Length = 197242 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 ctcttcttgtctacagtact 432 |||||||||||||||||||| Sbjct: 4550 ctcttcttgtctacagtact 4569
>gb|AC136905.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0064E13, complete sequence Length = 150158 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 tggcgttcaaggaaggcgtc 222 |||||||||||||||||||| Sbjct: 82005 tggcgttcaaggaaggcgtc 82024
>gb|AC102825.6| Mus musculus chromosome 15, clone RP24-227B12, complete sequence Length = 153145 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 gtagccaaggggaagggtgt 257 |||||||||||||||||||| Sbjct: 35644 gtagccaaggggaagggtgt 35663
>gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0038B22, complete sequence Length = 177557 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 tggcgttcaaggaaggcgtc 222 |||||||||||||||||||| Sbjct: 117735 tggcgttcaaggaaggcgtc 117754
>gb|AC132955.3| Mus musculus BAC clone RP24-266J20 from chromosome 6, complete sequence Length = 174507 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 aacaacatgtctgcctgtgt 47 |||||||||||||||||||| Sbjct: 118461 aacaacatgtctgcctgtgt 118442
>gb|AC134545.5| Mus musculus BAC clone RP24-470H2 from chromosome 18, complete sequence Length = 155887 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 tcttgctggaattctgctgg 406 |||||||||||||||||||| Sbjct: 25880 tcttgctggaattctgctgg 25861
>gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosome 18, complete sequence Length = 215137 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 tcttgctggaattctgctgg 406 |||||||||||||||||||| Sbjct: 7089 tcttgctggaattctgctgg 7108
>gb|AC125050.6| Mus musculus BAC clone RP23-372I18 from chromosome 7, complete sequence Length = 199810 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 accatcttcctctcctctgt 88 |||||||||||||||||||| Sbjct: 84465 accatcttcctctcctctgt 84446
>emb|Z99122.2|BSUB0019 Bacillus subtilis complete genome (section 19 of 21): from 3608981 to 3809670 Length = 200690 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 gcctatgtgcagcaaaccaa 471 |||||||||||||||||||| Sbjct: 125075 gcctatgtgcagcaaaccaa 125094
>emb|Z92952.1|BSZ92952 B.subtilis ywq[A,B,C,D,E,F,G,H,I,J,K,L,M,N,O] genes Length = 14047 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gcctatgtgcagcaaaccaa 471 |||||||||||||||||||| Sbjct: 1331 gcctatgtgcagcaaaccaa 1312
>gb|AC093768.3| Homo sapiens BAC clone RP11-113G13 from 4, complete sequence Length = 187624 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 gccaaggggaagggtgttta 260 |||||||||||||||||||| Sbjct: 65296 gccaaggggaagggtgttta 65315
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 ttcaaggaaggcgtcgatgc 227 |||||||||||||||||||| Sbjct: 2504769 ttcaaggaaggcgtcgatgc 2504750
>dbj|AK083570.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030046K16 product:unclassifiable, full insert sequence Length = 2480 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 atatacacaccagaagagtg 326 |||||||||||||||||||| Sbjct: 259 atatacacaccagaagagtg 278
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 tggcgttcaaggaaggcgtc 222 |||||||||||||||||||| Sbjct: 20071070 tggcgttcaaggaaggcgtc 20071089 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 tggcgttcaaggaaggcgtc 222 |||||||||||||||||||| Sbjct: 19940668 tggcgttcaaggaaggcgtc 19940687
>gb|AY696617.1| Pagrus major clone cm002740 microsatellite sequence Length = 734 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 catctttggctctgaaacca 72 |||||||||||||||||||| Sbjct: 389 catctttggctctgaaacca 408
>dbj|AB210421.1| Ciona intestinalis mRNA for transcription factor protein, complete cds, clone: citb004m11 Length = 2001 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 aagctatgcaccaaacgatg 489 |||||||||||||||||||| Sbjct: 442 aagctatgcaccaaacgatg 461
>dbj|AK119422.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-H02, full insert sequence Length = 3198 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 tggcgttcaaggaaggcgtc 222 |||||||||||||||||||| Sbjct: 221 tggcgttcaaggaaggcgtc 240
>gb|AC154300.2| Mus musculus BAC clone RP23-390F4 from 12, complete sequence Length = 187014 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 ctcttcttgtctacagtact 432 |||||||||||||||||||| Sbjct: 166412 ctcttcttgtctacagtact 166431
>dbj|AK116021.1| Ciona intestinalis cDNA, clone:citb004m11, full insert sequence Length = 2001 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 aagctatgcaccaaacgatg 489 |||||||||||||||||||| Sbjct: 442 aagctatgcaccaaacgatg 461
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 tggcgttcaaggaaggcgtc 222 |||||||||||||||||||| Sbjct: 20357746 tggcgttcaaggaaggcgtc 20357765 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 tggcgttcaaggaaggcgtc 222 |||||||||||||||||||| Sbjct: 20225647 tggcgttcaaggaaggcgtc 20225666
>gb|AC150648.2| Mus musculus BAC clone RP23-235N5 from 7, complete sequence Length = 190414 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 accatcttcctctcctctgt 88 |||||||||||||||||||| Sbjct: 170288 accatcttcctctcctctgt 170269
>emb|AL672298.4| Mouse DNA sequence from clone RP23-456D8 on chromosome X, complete sequence Length = 204050 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 553 aaatcagtaaatatccttaa 572 |||||||||||||||||||| Sbjct: 34280 aaatcagtaaatatccttaa 34299 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,178,367 Number of Sequences: 3902068 Number of extensions: 5178367 Number of successful extensions: 140731 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 140288 Number of HSP's gapped (non-prelim): 435 length of query: 591 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 568 effective length of database: 17,143,297,704 effective search space: 9737393095872 effective search space used: 9737393095872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)