Clone Name | basd2f07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_472398.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1035 Score = 289 bits (146), Expect = 3e-75 Identities = 260/298 (87%) Strand = Plus / Plus Query: 12 aagagctgggcgtctacctgctgtccttcgaccggcctgggtacggtgagagcgaccctg 71 ||||||||||| | |||| |||||||||||| ||||| ||||||| ||||||||||| Sbjct: 263 aagagctgggcatttaccagctgtccttcgatcggccggggtacgccgagagcgacccaa 322 Query: 72 acccggcaccgtctgagaagagcatcgccctcgacatcgaggagctcgccgacaacctgc 131 |||||||| | ||||||||||| ||||| ||| ||||||||||||| |||||||||| Sbjct: 323 acccggcaagtacagagaagagcatagccctggacgtcgaggagctcgcggacaacctgc 382 Query: 132 agctgggccccaaattccacctcgtcggcttctccatgggcggcgaaatcatgtggagct 191 ||||||||||||| ||| ||||| | ||||||||||||||||| || ||||||||||||| Sbjct: 383 agctgggccccaagttctacctcatgggcttctccatgggcggagagatcatgtggagct 442 Query: 192 gcctcaagtacatcccgcacaggctctccggggtggccgttctcggcccggtgggcaact 251 |||||||| ||||| | ||||||||| ||||||||||| |||| ||||| |||||||||| Sbjct: 443 gcctcaagcacatctcacacaggctcgccggggtggccattcttggccccgtgggcaact 502 Query: 252 attggtggtccggtttgccgtcgaacgtgtcacgggacgcctggtacgagcagctccc 309 | ||||||||||| ||||||||||||||||| || |||||||| || |||||||||| Sbjct: 503 actggtggtccggcttgccgtcgaacgtgtcgtggcacgcctggaaccagcagctccc 560
>dbj|AK102032.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033081A11, full insert sequence Length = 1293 Score = 289 bits (146), Expect = 3e-75 Identities = 260/298 (87%) Strand = Plus / Plus Query: 12 aagagctgggcgtctacctgctgtccttcgaccggcctgggtacggtgagagcgaccctg 71 ||||||||||| | |||| |||||||||||| ||||| ||||||| ||||||||||| Sbjct: 304 aagagctgggcatttaccagctgtccttcgatcggccggggtacgccgagagcgacccaa 363 Query: 72 acccggcaccgtctgagaagagcatcgccctcgacatcgaggagctcgccgacaacctgc 131 |||||||| | ||||||||||| ||||| ||| ||||||||||||| |||||||||| Sbjct: 364 acccggcaagtacagagaagagcatagccctggacgtcgaggagctcgcggacaacctgc 423 Query: 132 agctgggccccaaattccacctcgtcggcttctccatgggcggcgaaatcatgtggagct 191 ||||||||||||| ||| ||||| | ||||||||||||||||| || ||||||||||||| Sbjct: 424 agctgggccccaagttctacctcatgggcttctccatgggcggagagatcatgtggagct 483 Query: 192 gcctcaagtacatcccgcacaggctctccggggtggccgttctcggcccggtgggcaact 251 |||||||| ||||| | ||||||||| ||||||||||| |||| ||||| |||||||||| Sbjct: 484 gcctcaagcacatctcacacaggctcgccggggtggccattcttggccccgtgggcaact 543 Query: 252 attggtggtccggtttgccgtcgaacgtgtcacgggacgcctggtacgagcagctccc 309 | ||||||||||| ||||||||||||||||| || |||||||| || |||||||||| Sbjct: 544 actggtggtccggcttgccgtcgaacgtgtcgtggcacgcctggaaccagcagctccc 601
>emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L04, complete sequence Length = 143301 Score = 204 bits (103), Expect = 1e-49 Identities = 166/187 (88%) Strand = Plus / Plus Query: 12 aagagctgggcgtctacctgctgtccttcgaccggcctgggtacggtgagagcgaccctg 71 ||||||||||| | |||| |||||||||||| ||||| ||||||| ||||||||||| Sbjct: 91795 aagagctgggcatttaccagctgtccttcgatcggccggggtacgccgagagcgacccaa 91854 Query: 72 acccggcaccgtctgagaagagcatcgccctcgacatcgaggagctcgccgacaacctgc 131 ||| |||| | ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 91855 acctggcaagtacagagaagagcatcgccctggacatcgaggagctcgccgacaacctgc 91914 Query: 132 agctgggccccaaattccacctcgtcggcttctccatgggcggcgaaatcatgtggagct 191 ||||||||||||| ||| ||||| | |||||||||||||||||||| ||||||||||||| Sbjct: 91915 agctgggccccaagttctacctcatgggcttctccatgggcggcgagatcatgtggagct 91974 Query: 192 gcctcaa 198 ||||||| Sbjct: 91975 gcctcaa 91981 Score = 188 bits (95), Expect = 7e-45 Identities = 176/203 (86%) Strand = Plus / Plus Query: 12 aagagctgggcgtctacctgctgtccttcgaccggcctgggtacggtgagagcgaccctg 71 ||||||||||| | |||| |||||||||||| ||||| ||||||| ||||||||||| Sbjct: 83383 aagagctgggcatttaccagctgtccttcgatcggccggggtacgccgagagcgacccaa 83442 Query: 72 acccggcaccgtctgagaagagcatcgccctcgacatcgaggagctcgccgacaacctgc 131 |||||||| | ||||||||||| ||||| ||| ||||||||||||| |||||||||| Sbjct: 83443 acccggcaagtacagagaagagcatagccctggacgtcgaggagctcgcggacaacctgc 83502 Query: 132 agctgggccccaaattccacctcgtcggcttctccatgggcggcgaaatcatgtggagct 191 ||||||||||||| ||| ||||| | ||||||||||||||||| || ||||||||||||| Sbjct: 83503 agctgggccccaagttctacctcatgggcttctccatgggcggagagatcatgtggagct 83562 Query: 192 gcctcaagtacatcccgcacagg 214 |||||||| ||||| | |||||| Sbjct: 83563 gcctcaagcacatctcacacagg 83585 Score = 109 bits (55), Expect = 5e-21 Identities = 88/99 (88%) Strand = Plus / Plus Query: 211 caggctctccggggtggccgttctcggcccggtgggcaactattggtggtccggtttgcc 270 ||||||| ||||||||||| |||| ||||| ||||||||||| ||||||||||| ||||| Sbjct: 83677 caggctcgccggggtggccattcttggccccgtgggcaactactggtggtccggcttgcc 83736 Query: 271 gtcgaacgtgtcacgggacgcctggtacgagcagctccc 309 |||||||||||| || |||||||| || |||||||||| Sbjct: 83737 gtcgaacgtgtcgtggcacgcctggaaccagcagctccc 83775 Score = 93.7 bits (47), Expect = 3e-16 Identities = 86/99 (86%) Strand = Plus / Plus Query: 211 caggctctccggggtggccgttctcggcccggtgggcaactattggtggtccggtttgcc 270 ||||||| ||||||||||| |||| | ||| ||||||||||||||||||||||| ||||| Sbjct: 92110 caggctcgccggggtggccattcttgcccccgtgggcaactattggtggtccggcttgcc 92169 Query: 271 gtcgaacgtgtcacgggacgcctggtacgagcagctccc 309 ||||||| |||| || ||| |||| || |||||||||| Sbjct: 92170 gtcgaacatgtcgtggcacgtctggaaccagcagctccc 92208
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 204 bits (103), Expect = 1e-49 Identities = 166/187 (88%) Strand = Plus / Plus Query: 12 aagagctgggcgtctacctgctgtccttcgaccggcctgggtacggtgagagcgaccctg 71 ||||||||||| | |||| |||||||||||| ||||| ||||||| ||||||||||| Sbjct: 20361162 aagagctgggcatttaccagctgtccttcgatcggccggggtacgccgagagcgacccaa 20361221 Query: 72 acccggcaccgtctgagaagagcatcgccctcgacatcgaggagctcgccgacaacctgc 131 ||| |||| | ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 20361222 acctggcaagtacagagaagagcatcgccctggacatcgaggagctcgccgacaacctgc 20361281 Query: 132 agctgggccccaaattccacctcgtcggcttctccatgggcggcgaaatcatgtggagct 191 ||||||||||||| ||| ||||| | |||||||||||||||||||| ||||||||||||| Sbjct: 20361282 agctgggccccaagttctacctcatgggcttctccatgggcggcgagatcatgtggagct 20361341 Query: 192 gcctcaa 198 ||||||| Sbjct: 20361342 gcctcaa 20361348 Score = 188 bits (95), Expect = 7e-45 Identities = 176/203 (86%) Strand = Plus / Plus Query: 12 aagagctgggcgtctacctgctgtccttcgaccggcctgggtacggtgagagcgaccctg 71 ||||||||||| | |||| |||||||||||| ||||| ||||||| ||||||||||| Sbjct: 20352750 aagagctgggcatttaccagctgtccttcgatcggccggggtacgccgagagcgacccaa 20352809 Query: 72 acccggcaccgtctgagaagagcatcgccctcgacatcgaggagctcgccgacaacctgc 131 |||||||| | ||||||||||| ||||| ||| ||||||||||||| |||||||||| Sbjct: 20352810 acccggcaagtacagagaagagcatagccctggacgtcgaggagctcgcggacaacctgc 20352869 Query: 132 agctgggccccaaattccacctcgtcggcttctccatgggcggcgaaatcatgtggagct 191 ||||||||||||| ||| ||||| | ||||||||||||||||| || ||||||||||||| Sbjct: 20352870 agctgggccccaagttctacctcatgggcttctccatgggcggagagatcatgtggagct 20352929 Query: 192 gcctcaagtacatcccgcacagg 214 |||||||| ||||| | |||||| Sbjct: 20352930 gcctcaagcacatctcacacagg 20352952 Score = 109 bits (55), Expect = 5e-21 Identities = 88/99 (88%) Strand = Plus / Plus Query: 211 caggctctccggggtggccgttctcggcccggtgggcaactattggtggtccggtttgcc 270 ||||||| ||||||||||| |||| ||||| ||||||||||| ||||||||||| ||||| Sbjct: 20353044 caggctcgccggggtggccattcttggccccgtgggcaactactggtggtccggcttgcc 20353103 Query: 271 gtcgaacgtgtcacgggacgcctggtacgagcagctccc 309 |||||||||||| || |||||||| || |||||||||| Sbjct: 20353104 gtcgaacgtgtcgtggcacgcctggaaccagcagctccc 20353142 Score = 93.7 bits (47), Expect = 3e-16 Identities = 86/99 (86%) Strand = Plus / Plus Query: 211 caggctctccggggtggccgttctcggcccggtgggcaactattggtggtccggtttgcc 270 ||||||| ||||||||||| |||| | ||| ||||||||||||||||||||||| ||||| Sbjct: 20361477 caggctcgccggggtggccattcttgcccccgtgggcaactattggtggtccggcttgcc 20361536 Query: 271 gtcgaacgtgtcacgggacgcctggtacgagcagctccc 309 ||||||| |||| || ||| |||| || |||||||||| Sbjct: 20361537 gtcgaacatgtcgtggcacgtctggaaccagcagctccc 20361575
>dbj|AK119210.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E04, full insert sequence Length = 1405 Score = 151 bits (76), Expect = 2e-33 Identities = 175/208 (84%) Strand = Plus / Plus Query: 102 tcgacatcgaggagctcgccgacaacctgcagctgggccccaaattccacctcgtcggct 161 |||||||||| | |||||||||| |||||||| |||||||| ||| ||||| |||||| Sbjct: 563 tcgacatcgaagggctcgccgacgggctgcagctcggccccaagttctacctcatcggct 622 Query: 162 tctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccgcacaggctctccg 221 |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| | | Sbjct: 623 actccatgggcggggaaatcatgtggagctgcctcaaaaacatccctcacaggctcgcgg 682 Query: 222 gggtggccgttctcggcccggtgggcaactattggtggtccggtttgccgtcgaacgtgt 281 ||||| | | || || |||||||| ||||| |||||||| |||| ||||||||||||| Sbjct: 683 gggtgtcaatcctggggccggtggggaactactggtggtcgggttacccgtcgaacgtgt 742 Query: 282 cacgggacgcctggtacgagcagctccc 309 | ||| || ||||||| ||||||||| Sbjct: 743 cgacggaggcgtggtacgtgcagctccc 770 Score = 46.1 bits (23), Expect = 0.066 Identities = 50/59 (84%) Strand = Plus / Plus Query: 11 gaagagctgggcgtctacctgctgtccttcgaccggcctgggtacggtgagagcgaccc 69 ||||||||||| |||||| || | || ||||| || |||||||| || ||||||||||| Sbjct: 472 gaagagctgggtgtctacatggtctcgttcgatcgtcctgggtatggagagagcgaccc 530
>dbj|AK104452.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-H03, full insert sequence Length = 1399 Score = 151 bits (76), Expect = 2e-33 Identities = 175/208 (84%) Strand = Plus / Plus Query: 102 tcgacatcgaggagctcgccgacaacctgcagctgggccccaaattccacctcgtcggct 161 |||||||||| | |||||||||| |||||||| |||||||| ||| ||||| |||||| Sbjct: 563 tcgacatcgaagggctcgccgacgggctgcagctcggccccaagttctacctcatcggct 622 Query: 162 tctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccgcacaggctctccg 221 |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| | | Sbjct: 623 actccatgggcggggaaatcatgtggagctgcctcaaaaacatccctcacaggctcgcgg 682 Query: 222 gggtggccgttctcggcccggtgggcaactattggtggtccggtttgccgtcgaacgtgt 281 ||||| | | || || |||||||| ||||| |||||||| |||| ||||||||||||| Sbjct: 683 gggtgtcaatcctggggccggtggggaactactggtggtcgggttacccgtcgaacgtgt 742 Query: 282 cacgggacgcctggtacgagcagctccc 309 | ||| || ||||||| ||||||||| Sbjct: 743 cgacggaggcgtggtacgtgcagctccc 770 Score = 46.1 bits (23), Expect = 0.066 Identities = 50/59 (84%) Strand = Plus / Plus Query: 11 gaagagctgggcgtctacctgctgtccttcgaccggcctgggtacggtgagagcgaccc 69 ||||||||||| |||||| || | || ||||| || |||||||| || ||||||||||| Sbjct: 472 gaagagctgggtgtctacatggtctcgttcgatcgtcctgggtatggagagagcgaccc 530
>dbj|AK099017.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119A16, full insert sequence Length = 1391 Score = 151 bits (76), Expect = 2e-33 Identities = 175/208 (84%) Strand = Plus / Plus Query: 102 tcgacatcgaggagctcgccgacaacctgcagctgggccccaaattccacctcgtcggct 161 |||||||||| | |||||||||| |||||||| |||||||| ||| ||||| |||||| Sbjct: 564 tcgacatcgaagggctcgccgacgggctgcagctcggccccaagttctacctcatcggct 623 Query: 162 tctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccgcacaggctctccg 221 |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| | | Sbjct: 624 actccatgggcggggaaatcatgtggagctgcctcaaaaacatccctcacaggctcgcgg 683 Query: 222 gggtggccgttctcggcccggtgggcaactattggtggtccggtttgccgtcgaacgtgt 281 ||||| | | || || |||||||| ||||| |||||||| |||| ||||||||||||| Sbjct: 684 gggtgtcaatcctggggccggtggggaactactggtggtcgggttacccgtcgaacgtgt 743 Query: 282 cacgggacgcctggtacgagcagctccc 309 | ||| || ||||||| ||||||||| Sbjct: 744 cgacggaggcgtggtacgtgcagctccc 771 Score = 46.1 bits (23), Expect = 0.066 Identities = 50/59 (84%) Strand = Plus / Plus Query: 11 gaagagctgggcgtctacctgctgtccttcgaccggcctgggtacggtgagagcgaccc 69 ||||||||||| |||||| || | || ||||| || |||||||| || ||||||||||| Sbjct: 473 gaagagctgggtgtctacatggtctcgttcgatcgtcctgggtatggagagagcgaccc 531
>dbj|AK061527.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D10, full insert sequence Length = 1409 Score = 151 bits (76), Expect = 2e-33 Identities = 175/208 (84%) Strand = Plus / Plus Query: 102 tcgacatcgaggagctcgccgacaacctgcagctgggccccaaattccacctcgtcggct 161 |||||||||| | |||||||||| |||||||| |||||||| ||| ||||| |||||| Sbjct: 563 tcgacatcgaagggctcgccgacgggctgcagctcggccccaagttctacctcatcggct 622 Query: 162 tctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccgcacaggctctccg 221 |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| | | Sbjct: 623 actccatgggcggggaaatcatgtggagctgcctcaaaaacatccctcacaggctcgcgg 682 Query: 222 gggtggccgttctcggcccggtgggcaactattggtggtccggtttgccgtcgaacgtgt 281 ||||| | | || || |||||||| ||||| |||||||| |||| ||||||||||||| Sbjct: 683 gggtgtcaatcctggggccggtggggaactactggtggtcgggttacccgtcgaacgtgt 742 Query: 282 cacgggacgcctggtacgagcagctccc 309 | ||| || ||||||| ||||||||| Sbjct: 743 cgacggaggcgtggtacgtgcagctccc 770 Score = 46.1 bits (23), Expect = 0.066 Identities = 50/59 (84%) Strand = Plus / Plus Query: 11 gaagagctgggcgtctacctgctgtccttcgaccggcctgggtacggtgagagcgaccc 69 ||||||||||| |||||| || | || ||||| || |||||||| || ||||||||||| Sbjct: 472 gaagagctgggtgtctacatggtctcgttcgatcgtcctgggtatggagagagcgaccc 530
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 113 bits (57), Expect = 3e-22 Identities = 99/113 (87%) Strand = Plus / Plus Query: 102 tcgacatcgaggagctcgccgacaacctgcagctgggccccaaattccacctcgtcggct 161 |||||||||| | |||||||||| |||||||| |||||||| ||| ||||| |||||| Sbjct: 19613844 tcgacatcgaagggctcgccgacgggctgcagctcggccccaagttctacctcatcggct 19613903 Query: 162 tctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccgcacagg 214 |||||||||||| ||||||||||||||||||||||| ||||||| |||||| Sbjct: 19613904 actccatgggcggggaaatcatgtggagctgcctcaaaaacatccctcacagg 19613956 Score = 54.0 bits (27), Expect = 3e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 239 ccggtgggcaactattggtggtccggtttgccgtcgaacgtgtcacgggacgcctggtac 298 |||||||| ||||| |||||||| |||| |||||||||||||| ||| || |||||| Sbjct: 19614084 ccggtggggaactactggtggtcgggttacccgtcgaacgtgtcgacggaggcgtggtac 19614143 Query: 299 gagcagctccc 309 | ||||||||| Sbjct: 19614144 gtgcagctccc 19614154 Score = 46.1 bits (23), Expect = 0.066 Identities = 50/59 (84%) Strand = Plus / Plus Query: 11 gaagagctgggcgtctacctgctgtccttcgaccggcctgggtacggtgagagcgaccc 69 ||||||||||| |||||| || | || ||||| || |||||||| || ||||||||||| Sbjct: 19613753 gaagagctgggtgtctacatggtctcgttcgatcgtcctgggtatggagagagcgaccc 19613811 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 ctgcagctgggccccaaatt 147 |||||||||||||||||||| Sbjct: 33884229 ctgcagctgggccccaaatt 33884248
>dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0605D08 Length = 144340 Score = 113 bits (57), Expect = 3e-22 Identities = 99/113 (87%) Strand = Plus / Plus Query: 102 tcgacatcgaggagctcgccgacaacctgcagctgggccccaaattccacctcgtcggct 161 |||||||||| | |||||||||| |||||||| |||||||| ||| ||||| |||||| Sbjct: 80130 tcgacatcgaagggctcgccgacgggctgcagctcggccccaagttctacctcatcggct 80189 Query: 162 tctccatgggcggcgaaatcatgtggagctgcctcaagtacatcccgcacagg 214 |||||||||||| ||||||||||||||||||||||| ||||||| |||||| Sbjct: 80190 actccatgggcggggaaatcatgtggagctgcctcaaaaacatccctcacagg 80242 Score = 54.0 bits (27), Expect = 3e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 239 ccggtgggcaactattggtggtccggtttgccgtcgaacgtgtcacgggacgcctggtac 298 |||||||| ||||| |||||||| |||| |||||||||||||| ||| || |||||| Sbjct: 80370 ccggtggggaactactggtggtcgggttacccgtcgaacgtgtcgacggaggcgtggtac 80429 Query: 299 gagcagctccc 309 | ||||||||| Sbjct: 80430 gtgcagctccc 80440 Score = 46.1 bits (23), Expect = 0.066 Identities = 50/59 (84%) Strand = Plus / Plus Query: 11 gaagagctgggcgtctacctgctgtccttcgaccggcctgggtacggtgagagcgaccc 69 ||||||||||| |||||| || | || ||||| || |||||||| || ||||||||||| Sbjct: 80039 gaagagctgggtgtctacatggtctcgttcgatcgtcctgggtatggagagagcgaccc 80097
>ref|NM_197402.1| Oryza sativa (japonica cultivar-group) putative alpha/beta hydrolase (OSJNBb0018B10.25), mRNA Length = 1062 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 38 ttcgaccggcctgggtacggtgagagcgaccctgacccg 76 ||||||||| | |||||||| |||||||||||||||||| Sbjct: 325 ttcgaccgggcggggtacggcgagagcgaccctgacccg 363
>gb|AC079029.11| Oryza sativa chromosome 10 BAC OSJNBb0028C01 genomic sequence, complete sequence Length = 137366 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 38 ttcgaccggcctgggtacggtgagagcgaccctgacccg 76 ||||||||| | |||||||| |||||||||||||||||| Sbjct: 113132 ttcgaccgggcggggtacggcgagagcgaccctgacccg 113094
>gb|AC051634.6| Oryza sativa chromosome 10 BAC OSJNBb0018B10 genomic sequence, complete sequence Length = 135789 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 38 ttcgaccggcctgggtacggtgagagcgaccctgacccg 76 ||||||||| | |||||||| |||||||||||||||||| Sbjct: 121587 ttcgaccgggcggggtacggcgagagcgaccctgacccg 121625
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 38 ttcgaccggcctgggtacggtgagagcgaccctgacccg 76 ||||||||| | |||||||| |||||||||||||||||| Sbjct: 19664396 ttcgaccgggcggggtacggcgagagcgaccctgacccg 19664434
>dbj|AK105796.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-A03, full insert sequence Length = 1511 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 38 ttcgaccggcctgggtacggtgagagcgaccctgacccg 76 ||||||||| | |||||||| |||||||||||||||||| Sbjct: 556 ttcgaccgggcggggtacggcgagagcgaccctgacccg 594
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 38 ttcgaccggcctgggtacggtgagagcgaccctgacccg 76 ||||||||| | |||||||| |||||||||||||||||| Sbjct: 19675656 ttcgaccgggcggggtacggcgagagcgaccctgacccg 19675694
>ref|NM_190689.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1044 Score = 48.1 bits (24), Expect = 0.017 Identities = 27/28 (96%) Strand = Plus / Plus Query: 108 tcgaggagctcgccgacaacctgcagct 135 ||||||||||||||||||| |||||||| Sbjct: 365 tcgaggagctcgccgacaagctgcagct 392 Score = 42.1 bits (21), Expect = 1.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 184 gtggagctgcctcaagtacatcccgcacaggct 216 ||||||||||||||| |||||||| ||||||| Sbjct: 441 gtggagctgcctcaactacatcccttacaggct 473
>dbj|AK061887.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F10, full insert sequence Length = 1519 Score = 48.1 bits (24), Expect = 0.017 Identities = 27/28 (96%) Strand = Plus / Plus Query: 108 tcgaggagctcgccgacaacctgcagct 135 ||||||||||||||||||| |||||||| Sbjct: 610 tcgaggagctcgccgacaagctgcagct 637 Score = 42.1 bits (21), Expect = 1.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 184 gtggagctgcctcaagtacatcccgcacaggct 216 ||||||||||||||| |||||||| ||||||| Sbjct: 686 gtggagctgcctcaactacatcccttacaggct 718
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.017 Identities = 27/28 (96%) Strand = Plus / Plus Query: 108 tcgaggagctcgccgacaacctgcagct 135 ||||||||||||||||||| |||||||| Sbjct: 37149498 tcgaggagctcgccgacaagctgcagct 37149525 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 gtggagctgcctcaagtacatccc 207 ||||||||||||||| |||||||| Sbjct: 37149574 gtggagctgcctcaactacatccc 37149597
>dbj|AP003794.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489B03 Length = 150381 Score = 48.1 bits (24), Expect = 0.017 Identities = 27/28 (96%) Strand = Plus / Plus Query: 108 tcgaggagctcgccgacaacctgcagct 135 ||||||||||||||||||| |||||||| Sbjct: 24154 tcgaggagctcgccgacaagctgcagct 24181 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 gtggagctgcctcaagtacatccc 207 ||||||||||||||| |||||||| Sbjct: 24230 gtggagctgcctcaactacatccc 24253
>dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0683F02 Length = 153388 Score = 48.1 bits (24), Expect = 0.017 Identities = 27/28 (96%) Strand = Plus / Plus Query: 108 tcgaggagctcgccgacaacctgcagct 135 ||||||||||||||||||| |||||||| Sbjct: 150639 tcgaggagctcgccgacaagctgcagct 150666 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 gtggagctgcctcaagtacatccc 207 ||||||||||||||| |||||||| Sbjct: 150715 gtggagctgcctcaactacatccc 150738
>dbj|AK099121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038D03, full insert sequence Length = 1567 Score = 48.1 bits (24), Expect = 0.017 Identities = 27/28 (96%) Strand = Plus / Plus Query: 108 tcgaggagctcgccgacaacctgcagct 135 ||||||||||||||||||| |||||||| Sbjct: 586 tcgaggagctcgccgacaagctgcagct 613 Score = 42.1 bits (21), Expect = 1.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 184 gtggagctgcctcaagtacatcccgcacaggct 216 ||||||||||||||| |||||||| ||||||| Sbjct: 662 gtggagctgcctcaactacatcccttacaggct 694
>dbj|AK072912.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147H18, full insert sequence Length = 1358 Score = 48.1 bits (24), Expect = 0.017 Identities = 27/28 (96%) Strand = Plus / Plus Query: 108 tcgaggagctcgccgacaacctgcagct 135 ||||||||||||||||||| |||||||| Sbjct: 474 tcgaggagctcgccgacaagctgcagct 501 Score = 42.1 bits (21), Expect = 1.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 184 gtggagctgcctcaagtacatcccgcacaggct 216 ||||||||||||||| |||||||| ||||||| Sbjct: 550 gtggagctgcctcaactacatcccttacaggct 582
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 155 gtcggcttctccatgggcggcg 176 |||||||||||||||||||||| Sbjct: 3747350 gtcggcttctccatgggcggcg 3747371
>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29 Length = 299050 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 154 cgtcggcttctccatgggcggc 175 |||||||||||||||||||||| Sbjct: 47150 cgtcggcttctccatgggcggc 47171
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 151 cctcgtcggcttctccatggg 171 ||||||||||||||||||||| Sbjct: 1923575 cctcgtcggcttctccatggg 1923555
>gb|U35399.1|HSU35399 Human G protein-coupled receptor mRNA, complete cds Length = 1410 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 gagctgggcgtctacctgctg 34 ||||||||||||||||||||| Sbjct: 426 gagctgggcgtctacctgctg 446
>gb|BC105810.1| Homo sapiens ribosomal protein S15, mRNA (cDNA clone MGC:111130 IMAGE:6744553), complete cds Length = 537 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cggcttctccatgggcggcg 176 |||||||||||||||||||| Sbjct: 259 cggcttctccatgggcggcg 240
>ref|XM_512237.1| PREDICTED: Pan troglodytes similar to ribosomal protein S15; rat insulinoma gene (LOC455550), mRNA Length = 550 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cggcttctccatgggcggcg 176 |||||||||||||||||||| Sbjct: 299 cggcttctccatgggcggcg 280
>ref|XM_515900.1| PREDICTED: Pan troglodytes similar to ribosomal protein S15; rat insulinoma gene (LOC459733), mRNA Length = 504 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cggcttctccatgggcggcg 176 |||||||||||||||||||| Sbjct: 226 cggcttctccatgggcggcg 207
>ref|XM_514280.1| PREDICTED: Pan troglodytes similar to RIKEN cDNA 1810063B05 (LOC457829), mRNA Length = 1989 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 cggcttctccatgggcggcg 176 |||||||||||||||||||| Sbjct: 883 cggcttctccatgggcggcg 902
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 gcatcgccctcgacatcgag 112 |||||||||||||||||||| Sbjct: 2898940 gcatcgccctcgacatcgag 2898959
>gb|BC080543.1| Homo sapiens cDNA clone IMAGE:5556479, with apparent retained intron Length = 1629 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cggcttctccatgggcggcg 176 |||||||||||||||||||| Sbjct: 1361 cggcttctccatgggcggcg 1342
>gb|BC064908.1| Homo sapiens ribosomal protein S15, mRNA (cDNA clone MGC:70657 IMAGE:6053159), complete cds Length = 539 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cggcttctccatgggcggcg 176 |||||||||||||||||||| Sbjct: 225 cggcttctccatgggcggcg 206
>ref|NM_001018.3| Homo sapiens ribosomal protein S15 (RPS15), mRNA Length = 531 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cggcttctccatgggcggcg 176 |||||||||||||||||||| Sbjct: 281 cggcttctccatgggcggcg 262
>gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome Length = 3059876 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 153 tcgtcggcttctccatgggcggcg 176 ||||||||||||| |||||||||| Sbjct: 2784848 tcgtcggcttctctatgggcggcg 2784871
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 aggagctcgccgacaacctg 130 |||||||||||||||||||| Sbjct: 160903 aggagctcgccgacaacctg 160922
>emb|AL355472.19| Human DNA sequence from clone RP5-827C21 on chromosome 1 Contains a ribosomal protein S15 (RPS15) pseudogene, three novel genes (LOC388753), the 3' end of the TARBP1 gene for TAR (HIV) RNA binding protein 1 and a CpG island, complete sequence Length = 92628 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 cggcttctccatgggcggcg 176 |||||||||||||||||||| Sbjct: 29209 cggcttctccatgggcggcg 29228
>emb|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segment 1/6 Length = 307150 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 gggtggccgttctcggcccg 241 |||||||||||||||||||| Sbjct: 303681 gggtggccgttctcggcccg 303662
>emb|CR857922.1| Pongo pygmaeus mRNA; cDNA DKFZp469I158 (from clone DKFZp469I158) Length = 677 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cggcttctccatgggcggcg 176 |||||||||||||||||||| Sbjct: 242 cggcttctccatgggcggcg 223
>gb|AC027307.5| Homo sapiens chromosome 19 clone CTB-25B13, complete sequence Length = 153570 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cggcttctccatgggcggcg 176 |||||||||||||||||||| Sbjct: 29971 cggcttctccatgggcggcg 29952
>emb|CR597356.1| full-length cDNA clone CS0DM004YD13 of Fetal liver of Homo sapiens (human) Length = 468 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cggcttctccatgggcggcg 176 |||||||||||||||||||| Sbjct: 217 cggcttctccatgggcggcg 198
>emb|CR593936.1| full-length cDNA clone CS0DA002YL13 of Neuroblastoma of Homo sapiens (human) Length = 467 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cggcttctccatgggcggcg 176 |||||||||||||||||||| Sbjct: 217 cggcttctccatgggcggcg 198
>emb|CR592941.1| full-length cDNA clone CS0DC025YD18 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 611 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cggcttctccatgggcggcg 176 |||||||||||||||||||| Sbjct: 360 cggcttctccatgggcggcg 341
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 acctgctgtccttcgaccgg 46 |||||||||||||||||||| Sbjct: 3046485 acctgctgtccttcgaccgg 3046466
>dbj|AK142636.1| Mus musculus 10 days lactation, adult female mammary gland cDNA, RIKEN full-length enriched library, clone:D730026K06 product:unclassifiable, full insert sequence Length = 1516 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 cgaggagctcgccgacaacc 128 |||||||||||||||||||| Sbjct: 1110 cgaggagctcgccgacaacc 1091
>ref|XM_939370.1| PREDICTED: Homo sapiens similar to 40S ribosomal protein S15 (RIG protein) (LOC650283), mRNA Length = 512 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cggcttctccatgggcggcg 176 |||||||||||||||||||| Sbjct: 243 cggcttctccatgggcggcg 224
>ref|XM_496442.2| PREDICTED: Homo sapiens similar to 40S ribosomal protein S15 (RIG protein) (LOC440733), mRNA Length = 514 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cggcttctccatgggcggcg 176 |||||||||||||||||||| Sbjct: 243 cggcttctccatgggcggcg 224
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 cgaggaagagctgggcgtct 26 |||||||||||||||||||| Sbjct: 2365764 cgaggaagagctgggcgtct 2365745
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 ggaagagctgggcgtctacctgct 33 |||||||||||||||| ||||||| Sbjct: 21037 ggaagagctgggcgtcaacctgct 21060
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 gagcatcgccctcgacatcg 110 |||||||||||||||||||| Sbjct: 2548104 gagcatcgccctcgacatcg 2548123
>gb|AY891970.1| Synthetic construct Homo sapiens clone FLH028831.01L ribosomal protein S15 (RPS15) mRNA, partial cds Length = 438 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cggcttctccatgggcggcg 176 |||||||||||||||||||| Sbjct: 219 cggcttctccatgggcggcg 200
>dbj|AP004094.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1695_H09 Length = 114721 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 ctgcagctgggccccaaatt 147 |||||||||||||||||||| Sbjct: 100807 ctgcagctgggccccaaatt 100826
>dbj|AP003975.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_E04 Length = 133621 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 ctgcagctgggccccaaatt 147 |||||||||||||||||||| Sbjct: 43192 ctgcagctgggccccaaatt 43211
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 aacctgcagctgggccccaa 144 |||||||||||||||||||| Sbjct: 2114229 aacctgcagctgggccccaa 2114248
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 tcggcttctccatgggcggc 175 |||||||||||||||||||| Sbjct: 4141308 tcggcttctccatgggcggc 4141327
>dbj|AB028044.1| Rhodobacter sphaeroides gene for farnesyl diphosphate synthase, complete cds Length = 1477 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 gcatcgccctcgacatcgag 112 |||||||||||||||||||| Sbjct: 974 gcatcgccctcgacatcgag 955
>gb|AC131670.5| Mus musculus BAC clone RP23-307I19 from 5, complete sequence Length = 197080 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 cgaggagctcgccgacaacc 128 |||||||||||||||||||| Sbjct: 133863 cgaggagctcgccgacaacc 133844
>gb|M32405.1|HUMRIGA Human homologue of rat insulinoma gene (rig), exons 1-4 Length = 2862 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cggcttctccatgggcggcg 176 |||||||||||||||||||| Sbjct: 2316 cggcttctccatgggcggcg 2297
>gb|J02984.1|HUMIDB Human insulinoma rig-analog mRNA encoding DNA-binding protein, complete cds Length = 498 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cggcttctccatgggcggcg 176 |||||||||||||||||||| Sbjct: 248 cggcttctccatgggcggcg 229 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,681,049 Number of Sequences: 3902068 Number of extensions: 1681049 Number of successful extensions: 31288 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30712 Number of HSP's gapped (non-prelim): 568 length of query: 310 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 288 effective length of database: 17,147,199,772 effective search space: 4938393534336 effective search space used: 4938393534336 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)