ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF39_ARATH (Q9C5Z1) Eukaryotic translation initiation factor 3 s... 217 2e-56
2IF39_TOBAC (P56821) Eukaryotic translation initiation factor 3 s... 214 1e-55
3IF39_SCHPO (Q10425) Probable eukaryotic translation initiation f... 109 3e-24
4IF39_HUMAN (P55884) Eukaryotic translation initiation factor 3 s... 107 1e-23
5IF39_RAT (Q4G061) Eukaryotic translation initiation factor 3 sub... 107 1e-23
6IF39_MOUSE (Q8JZQ9) Eukaryotic translation initiation factor 3 s... 107 1e-23
7IF39_YEAST (P06103) Eukaryotic translation initiation factor 3 9... 60 4e-09
8GAG_SFV3L (P27400) Gag polyprotein (Core polyprotein) 31 2.0
9CFTR_CALMO (Q2QLB4) Cystic fibrosis transmembrane conductance re... 30 2.7
10PBP4_ECOLI (P24228) Penicillin-binding protein 4 precursor (PBP-... 30 3.5
11DNAA_DEIRA (Q9RYE7) Chromosomal replication initiator protein dnaA 30 3.5
12CFTR_CALJA (Q2QLF9) Cystic fibrosis transmembrane conductance re... 30 4.5
13LIFR_RAT (O70535) Leukemia inhibitory factor receptor precursor ... 29 5.9
14CAF1_DROME (Q24572) Probable histone-binding protein Caf1 (Chrom... 29 7.7

>IF39_ARATH (Q9C5Z1) Eukaryotic translation initiation factor 3 subunit 9|
           (eIF-3 eta) (eIF3 p110) (eIF3b) (p82)
          Length = 712

 Score =  217 bits (552), Expect = 2e-56
 Identities = 101/160 (63%), Positives = 126/160 (78%)
 Frame = +1

Query: 4   SYEPSPMYHTNMVVLHIFDVRSGKMMLDFKGTADEFTRSSSVGVYGISWPIFRWGGGRDD 183
           S EPS     + V + +FDVR+G+MM DFKG+ADEF+     GV G SWP+FRW GG+DD
Sbjct: 269 SQEPSNPRDASKVEIKVFDVRTGRMMRDFKGSADEFSIGGPGGVAGASWPVFRWAGGKDD 328

Query: 184 KYFAKLGKNVISVYETETFSLLDKEPLKIDNVADFSWSPTEPILSCFVPELGGGKQPARV 363
           KYFAKL KN ISVYETETFSL+DK+ +K+DNV D  WSPT+ ILS FVPE GGG QPA+V
Sbjct: 329 KYFAKLSKNTISVYETETFSLIDKKSMKVDNVVDICWSPTDSILSLFVPEQGGGNQPAKV 388

Query: 364 SLVRIPGKLVMRQKILSNASNCKMHWQHNGEYLAVQVERY 483
           +LV+IP K+ +RQK L + S+CKM+WQ +GEYLAV+V+RY
Sbjct: 389 ALVQIPSKVELRQKNLFSVSDCKMYWQSSGEYLAVKVDRY 428



to top

>IF39_TOBAC (P56821) Eukaryotic translation initiation factor 3 subunit 9|
           (eIF-3 eta) (eIF3 p110) (eIF3b)
          Length = 719

 Score =  214 bits (544), Expect = 1e-55
 Identities = 101/160 (63%), Positives = 130/160 (81%)
 Frame = +1

Query: 4   SYEPSPMYHTNMVVLHIFDVRSGKMMLDFKGTADEFTRSSSVGVYGISWPIFRWGGGRDD 183
           S+EPS    ++ VVL+I DVR+GK+M DF+G+ADEF    + GV G+SWP+FRW GG+ D
Sbjct: 273 SHEPSNPRDSHAVVLNISDVRTGKVMRDFQGSADEFAVGGTGGVTGVSWPVFRWSGGKQD 332

Query: 184 KYFAKLGKNVISVYETETFSLLDKEPLKIDNVADFSWSPTEPILSCFVPELGGGKQPARV 363
           KYFA++GKNVISVYETETFSL+DK+ +K++NV DFSWSP +PIL+ FVPE   G QPARV
Sbjct: 333 KYFARIGKNVISVYETETFSLIDKKSIKVENVMDFSWSPADPILALFVPEC--GNQPARV 390

Query: 364 SLVRIPGKLVMRQKILSNASNCKMHWQHNGEYLAVQVERY 483
           SLV+IP K  +RQK L + S+CKM+WQ NG+YLAV+V+RY
Sbjct: 391 SLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRY 430



to top

>IF39_SCHPO (Q10425) Probable eukaryotic translation initiation factor 3 90 kDa|
           subunit (eIF3 p90)
          Length = 725

 Score =  109 bits (273), Expect = 3e-24
 Identities = 62/155 (40%), Positives = 94/155 (60%), Gaps = 11/155 (7%)
 Frame = +1

Query: 52  IFDVRSGKMMLDFKGTADEFTRSSSVGVYGISWPIFRWGGGRDDKYFAKL--GKNVISVY 225
           ++D+ SG+++  FK          S     + WPIF+W    DDKY A++  G++ ISVY
Sbjct: 281 VWDIASGRILRSFKIPPQP---EGSKDGKKVIWPIFKWSA--DDKYLARVTVGQS-ISVY 334

Query: 226 ETETFSLLDKEPLKIDNVADFSWSPT---------EPILSCFVPELGGGKQPARVSLVRI 378
           ET + +L+DK+ +KID V +F W P          E +L+ + PE+    QPARV+L+ I
Sbjct: 335 ETPSLALVDKKTIKIDGVQNFEWCPVSDALGRDSKEQLLAYWTPEITN--QPARVALISI 392

Query: 379 PGKLVMRQKILSNASNCKMHWQHNGEYLAVQVERY 483
           P K  +R K L N S+CK++WQ NG+YL V+V+R+
Sbjct: 393 PSKSTIRTKNLFNVSDCKLYWQSNGDYLCVKVDRH 427



to top

>IF39_HUMAN (P55884) Eukaryotic translation initiation factor 3 subunit 9|
           (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b) (Prt1
           homolog) (hPrt1)
          Length = 814

 Score =  107 bits (268), Expect = 1e-23
 Identities = 51/111 (45%), Positives = 76/111 (68%)
 Frame = +1

Query: 148 WPIFRWGGGRDDKYFAKLGKNVISVYETETFSLLDKEPLKIDNVADFSWSPTEPILSCFV 327
           WPIF+W    D K+FA++  + +S+YET +  LLDK+ LKI  + DFSWSP   I++ +V
Sbjct: 426 WPIFKWS--HDGKFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWV 483

Query: 328 PELGGGKQPARVSLVRIPGKLVMRQKILSNASNCKMHWQHNGEYLAVQVER 480
           PE      PARV+L+++P +  +R + L N  +CK+HWQ NG+YL V+V+R
Sbjct: 484 PE--DKDIPARVTLMQLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDR 532



to top

>IF39_RAT (Q4G061) Eukaryotic translation initiation factor 3 subunit 9|
           (eIF-3 eta)
          Length = 797

 Score =  107 bits (268), Expect = 1e-23
 Identities = 51/111 (45%), Positives = 76/111 (68%)
 Frame = +1

Query: 148 WPIFRWGGGRDDKYFAKLGKNVISVYETETFSLLDKEPLKIDNVADFSWSPTEPILSCFV 327
           WPIF+W    D K+FA++  + +S+YET +  LLDK+ LKI  + DFSWSP   I++ +V
Sbjct: 409 WPIFKWS--HDGKFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWV 466

Query: 328 PELGGGKQPARVSLVRIPGKLVMRQKILSNASNCKMHWQHNGEYLAVQVER 480
           PE      PARV+L+++P +  +R + L N  +CK+HWQ NG+YL V+V+R
Sbjct: 467 PE--DKDIPARVTLMQLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDR 515



to top

>IF39_MOUSE (Q8JZQ9) Eukaryotic translation initiation factor 3 subunit 9|
           (eIF-3 eta) (eIF3 p116)
          Length = 803

 Score =  107 bits (268), Expect = 1e-23
 Identities = 51/111 (45%), Positives = 76/111 (68%)
 Frame = +1

Query: 148 WPIFRWGGGRDDKYFAKLGKNVISVYETETFSLLDKEPLKIDNVADFSWSPTEPILSCFV 327
           WPIF+W    D K+FA++  + +S+YET +  LLDK+ LKI  + DFSWSP   I++ +V
Sbjct: 415 WPIFKWS--HDGKFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWV 472

Query: 328 PELGGGKQPARVSLVRIPGKLVMRQKILSNASNCKMHWQHNGEYLAVQVER 480
           PE      PARV+L+++P +  +R + L N  +CK+HWQ NG+YL V+V+R
Sbjct: 473 PE--DKDIPARVTLMQLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDR 521



to top

>IF39_YEAST (P06103) Eukaryotic translation initiation factor 3 90 kDa subunit|
           (eIF3 p90) (Cell cycle regulation and translation
           initiation protein)
          Length = 763

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 14/160 (8%)
 Frame = +1

Query: 46  LHIFDVRSGKMMLDFKGTADEFTRSSSVGVYGISWPIFRWGGGRDDKYFAKLGKNVISVY 225
           L I+D+ SG +M  F      +          + WP+ RW    +DKY A++  + + V+
Sbjct: 312 LCIWDIASGLLMATFPVIKSPY----------LKWPLVRWS--YNDKYCARMVGDSLIVH 359

Query: 226 E-TETFSLLDKEPLKIDNVADFSWSPT-----------EP--ILSCFVPELGGGKQPARV 363
           + T+ F  L+ + LK   + DFS++P            EP  +L+ + PE       A +
Sbjct: 360 DATKNFMPLEAKALKPSGIRDFSFAPEGVKLQPFRNGDEPSVLLAYWTPETNNSACTATI 419

Query: 364 SLVRIPGKLVMRQKILSNASNCKMHWQHNGEYLAVQVERY 483
           +   +P   V++   L   SN  +HWQ+  E+L   VER+
Sbjct: 420 A--EVPRGRVLKTVNLVQVSNVTLHWQNQAEFLCFNVERH 457



to top

>GAG_SFV3L (P27400) Gag polyprotein (Core polyprotein)|
          Length = 643

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 2/114 (1%)
 Frame = -2

Query: 398 RITSLPGIRTRLTLAGCFPPPNSGTKQDKIGSVGDQLKSATLSIFKGSLSRSENVSVSYT 219
           RI    G+R  L +AG   PP+S         +G  + S++L    GS S   ++   +T
Sbjct: 168 RIQDRLGLRDNLPVAGIQAPPSS--------PIGQPIASSSLQPIPGSSSSPADLDGIWT 219

Query: 218 DITFFPSLAK--YLSSLPPPHLKIGHEIP*TPTLELLVNSSAVPLKSSIILPLL 63
                P L++  Y   LP      G  IP  P+    V  S   L + +  P++
Sbjct: 220 PRQIDPRLSRVAYNPFLPGSSDGSGGSIPVQPSAPPAVLPSLPSLPAPVSQPII 273



to top

>CFTR_CALMO (Q2QLB4) Cystic fibrosis transmembrane conductance regulator (CFTR)|
            (cAMP-dependent chloride channel) (ATP-binding cassette
            transporter sub-family C member 7)
          Length = 1480

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
 Frame = +1

Query: 115  RSSSVGVYGISWPIFRWGGGRDDKYFAKLGKNVI--SVYETETFSLLDKEPLKIDNVADF 288
            R S  G   +SW   +    +    F +  KN I  S+     FS++ K PL+++ + + 
Sbjct: 668  RFSLEGDAPVSWTETKKQSFKQTGEFGEKRKNSILNSINSIRKFSIVHKTPLQMNGIEED 727

Query: 289  SWSPTEPILSCFVPELGGGKQPARVSLVRIPGKLVMRQKILSNASNCKMHWQHNGE 456
            S  P+E  LS       G     R+S++     L +R++   +  N   H  + G+
Sbjct: 728  SDEPSERRLSLIPDSEQGEAILPRISVINTGPALQVRRR--QSVLNMMTHSVNQGQ 781



to top

>PBP4_ECOLI (P24228) Penicillin-binding protein 4 precursor (PBP-4) [Includes:|
           D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)
           (DD-peptidase) (DD-carboxypeptidase);
           D-alanyl-D-alanine-endopeptidase (EC 3.4.99.-)
           (DD-endopeptidase)]
          Length = 477

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
 Frame = -2

Query: 413 ERIFCRITSLPGIRTRLTLAGCFPP-----PNSGTKQDKIGSVG----DQLKSATLSIFK 261
           E  +C +  +PG   R TL GC P      P +   QD     G    D+LK A ++ + 
Sbjct: 213 EAQYCELDVVPGDLNRFTLTGCLPQRSEPLPLAFAVQDGASYAGAILKDELKQAGIT-WS 271

Query: 260 GSLSRSENVS 231
           G+L R   V+
Sbjct: 272 GTLLRQTQVN 281



to top

>DNAA_DEIRA (Q9RYE7) Chromosomal replication initiator protein dnaA|
          Length = 466

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = -1

Query: 342 TTQFRHKTG*DRLGGRPTEICHVVYLQGLLIKK*ECLSFIHRYNILPKLSKIFIISSTTP 163
           TTQFR++        R  ++  V  +Q L  K+     F H +N L + +K  I+SS  P
Sbjct: 210 TTQFRNRY-------RSVDLLLVDDIQFLAGKERTQEEFFHTFNALYESNKQIILSSDRP 262

Query: 162 PED 154
           P+D
Sbjct: 263 PKD 265



to top

>CFTR_CALJA (Q2QLF9) Cystic fibrosis transmembrane conductance regulator (CFTR)|
            (cAMP-dependent chloride channel) (ATP-binding cassette
            transporter sub-family C member 7)
          Length = 1481

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
 Frame = +1

Query: 115  RSSSVGVYGISWPIFRWGGGRDDKYFAKLGKNVI--SVYETETFSLLDKEPLKIDNVADF 288
            R S  G   +SW   +    +    F +  KN I  S+     FS++ K PL+++ + + 
Sbjct: 668  RFSLEGDAPVSWTETKKQSFKQTGEFGEKRKNSILNSINSIRKFSIVQKTPLQMNGIEED 727

Query: 289  SWSPTEPILSCFVPELGGGKQPARVSLVRIPGKLVMRQKILSNASNCKMHWQHNGE 456
            S  P E  LS       G     R+S++     L +R++   +  N   H  + G+
Sbjct: 728  SDEPLERRLSLVPDSEQGEAILPRISVINTGPALQVRRR--QSVLNMMTHSVNQGQ 781



to top

>LIFR_RAT (O70535) Leukemia inhibitory factor receptor precursor (LIF|
           receptor) (LIF-R) (CD118 antigen)
          Length = 1093

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 20/84 (23%), Positives = 36/84 (42%)
 Frame = +1

Query: 199 LGKNVISVYETETFSLLDKEPLKIDNVADFSWSPTEPILSCFVPELGGGKQPARVSLVRI 378
           L  NV      ET SL   E L   + A+   +  + I+S       G   P++++ + I
Sbjct: 565 LSYNVSCSSSEETQSL--SEILDPQHKAEIKVNKNDYIISVVARNSAGSSPPSKIASMEI 622

Query: 379 PGKLVMRQKILSNASNCKMHWQHN 450
           P   +  ++ +   +   + WQHN
Sbjct: 623 PNDDITVEQAVGIGNRIFLSWQHN 646



to top

>CAF1_DROME (Q24572) Probable histone-binding protein Caf1 (Chromatin assembly|
           factor 1 p55 subunit) (CAF-1 p55 subunit) (dCAF-1)
           (Nucleosome remodeling factor 55 kDa subunit) (NURF-55)
          Length = 430

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 277 VADFSWSPTEPILSCFVPE 333
           ++DFSW+P EP + C V E
Sbjct: 381 ISDFSWNPNEPWIICSVSE 399


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,730,612
Number of Sequences: 219361
Number of extensions: 1708274
Number of successful extensions: 4802
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4793
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top