ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2f03 |
|---|---|
| Clone Library Name | barley_pub |
>IF39_ARATH (Q9C5Z1) Eukaryotic translation initiation factor 3 subunit 9| (eIF-3 eta) (eIF3 p110) (eIF3b) (p82) Length = 712 Score = 217 bits (552), Expect = 2e-56 Identities = 101/160 (63%), Positives = 126/160 (78%) Frame = +1 Query: 4 SYEPSPMYHTNMVVLHIFDVRSGKMMLDFKGTADEFTRSSSVGVYGISWPIFRWGGGRDD 183 S EPS + V + +FDVR+G+MM DFKG+ADEF+ GV G SWP+FRW GG+DD Sbjct: 269 SQEPSNPRDASKVEIKVFDVRTGRMMRDFKGSADEFSIGGPGGVAGASWPVFRWAGGKDD 328 Query: 184 KYFAKLGKNVISVYETETFSLLDKEPLKIDNVADFSWSPTEPILSCFVPELGGGKQPARV 363 KYFAKL KN ISVYETETFSL+DK+ +K+DNV D WSPT+ ILS FVPE GGG QPA+V Sbjct: 329 KYFAKLSKNTISVYETETFSLIDKKSMKVDNVVDICWSPTDSILSLFVPEQGGGNQPAKV 388 Query: 364 SLVRIPGKLVMRQKILSNASNCKMHWQHNGEYLAVQVERY 483 +LV+IP K+ +RQK L + S+CKM+WQ +GEYLAV+V+RY Sbjct: 389 ALVQIPSKVELRQKNLFSVSDCKMYWQSSGEYLAVKVDRY 428
>IF39_TOBAC (P56821) Eukaryotic translation initiation factor 3 subunit 9| (eIF-3 eta) (eIF3 p110) (eIF3b) Length = 719 Score = 214 bits (544), Expect = 1e-55 Identities = 101/160 (63%), Positives = 130/160 (81%) Frame = +1 Query: 4 SYEPSPMYHTNMVVLHIFDVRSGKMMLDFKGTADEFTRSSSVGVYGISWPIFRWGGGRDD 183 S+EPS ++ VVL+I DVR+GK+M DF+G+ADEF + GV G+SWP+FRW GG+ D Sbjct: 273 SHEPSNPRDSHAVVLNISDVRTGKVMRDFQGSADEFAVGGTGGVTGVSWPVFRWSGGKQD 332 Query: 184 KYFAKLGKNVISVYETETFSLLDKEPLKIDNVADFSWSPTEPILSCFVPELGGGKQPARV 363 KYFA++GKNVISVYETETFSL+DK+ +K++NV DFSWSP +PIL+ FVPE G QPARV Sbjct: 333 KYFARIGKNVISVYETETFSLIDKKSIKVENVMDFSWSPADPILALFVPEC--GNQPARV 390 Query: 364 SLVRIPGKLVMRQKILSNASNCKMHWQHNGEYLAVQVERY 483 SLV+IP K +RQK L + S+CKM+WQ NG+YLAV+V+RY Sbjct: 391 SLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRY 430
>IF39_SCHPO (Q10425) Probable eukaryotic translation initiation factor 3 90 kDa| subunit (eIF3 p90) Length = 725 Score = 109 bits (273), Expect = 3e-24 Identities = 62/155 (40%), Positives = 94/155 (60%), Gaps = 11/155 (7%) Frame = +1 Query: 52 IFDVRSGKMMLDFKGTADEFTRSSSVGVYGISWPIFRWGGGRDDKYFAKL--GKNVISVY 225 ++D+ SG+++ FK S + WPIF+W DDKY A++ G++ ISVY Sbjct: 281 VWDIASGRILRSFKIPPQP---EGSKDGKKVIWPIFKWSA--DDKYLARVTVGQS-ISVY 334 Query: 226 ETETFSLLDKEPLKIDNVADFSWSPT---------EPILSCFVPELGGGKQPARVSLVRI 378 ET + +L+DK+ +KID V +F W P E +L+ + PE+ QPARV+L+ I Sbjct: 335 ETPSLALVDKKTIKIDGVQNFEWCPVSDALGRDSKEQLLAYWTPEITN--QPARVALISI 392 Query: 379 PGKLVMRQKILSNASNCKMHWQHNGEYLAVQVERY 483 P K +R K L N S+CK++WQ NG+YL V+V+R+ Sbjct: 393 PSKSTIRTKNLFNVSDCKLYWQSNGDYLCVKVDRH 427
>IF39_HUMAN (P55884) Eukaryotic translation initiation factor 3 subunit 9| (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b) (Prt1 homolog) (hPrt1) Length = 814 Score = 107 bits (268), Expect = 1e-23 Identities = 51/111 (45%), Positives = 76/111 (68%) Frame = +1 Query: 148 WPIFRWGGGRDDKYFAKLGKNVISVYETETFSLLDKEPLKIDNVADFSWSPTEPILSCFV 327 WPIF+W D K+FA++ + +S+YET + LLDK+ LKI + DFSWSP I++ +V Sbjct: 426 WPIFKWS--HDGKFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWV 483 Query: 328 PELGGGKQPARVSLVRIPGKLVMRQKILSNASNCKMHWQHNGEYLAVQVER 480 PE PARV+L+++P + +R + L N +CK+HWQ NG+YL V+V+R Sbjct: 484 PE--DKDIPARVTLMQLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDR 532
>IF39_RAT (Q4G061) Eukaryotic translation initiation factor 3 subunit 9| (eIF-3 eta) Length = 797 Score = 107 bits (268), Expect = 1e-23 Identities = 51/111 (45%), Positives = 76/111 (68%) Frame = +1 Query: 148 WPIFRWGGGRDDKYFAKLGKNVISVYETETFSLLDKEPLKIDNVADFSWSPTEPILSCFV 327 WPIF+W D K+FA++ + +S+YET + LLDK+ LKI + DFSWSP I++ +V Sbjct: 409 WPIFKWS--HDGKFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWV 466 Query: 328 PELGGGKQPARVSLVRIPGKLVMRQKILSNASNCKMHWQHNGEYLAVQVER 480 PE PARV+L+++P + +R + L N +CK+HWQ NG+YL V+V+R Sbjct: 467 PE--DKDIPARVTLMQLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDR 515
>IF39_MOUSE (Q8JZQ9) Eukaryotic translation initiation factor 3 subunit 9| (eIF-3 eta) (eIF3 p116) Length = 803 Score = 107 bits (268), Expect = 1e-23 Identities = 51/111 (45%), Positives = 76/111 (68%) Frame = +1 Query: 148 WPIFRWGGGRDDKYFAKLGKNVISVYETETFSLLDKEPLKIDNVADFSWSPTEPILSCFV 327 WPIF+W D K+FA++ + +S+YET + LLDK+ LKI + DFSWSP I++ +V Sbjct: 415 WPIFKWS--HDGKFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWV 472 Query: 328 PELGGGKQPARVSLVRIPGKLVMRQKILSNASNCKMHWQHNGEYLAVQVER 480 PE PARV+L+++P + +R + L N +CK+HWQ NG+YL V+V+R Sbjct: 473 PE--DKDIPARVTLMQLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDR 521
>IF39_YEAST (P06103) Eukaryotic translation initiation factor 3 90 kDa subunit| (eIF3 p90) (Cell cycle regulation and translation initiation protein) Length = 763 Score = 59.7 bits (143), Expect = 4e-09 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 14/160 (8%) Frame = +1 Query: 46 LHIFDVRSGKMMLDFKGTADEFTRSSSVGVYGISWPIFRWGGGRDDKYFAKLGKNVISVY 225 L I+D+ SG +M F + + WP+ RW +DKY A++ + + V+ Sbjct: 312 LCIWDIASGLLMATFPVIKSPY----------LKWPLVRWS--YNDKYCARMVGDSLIVH 359 Query: 226 E-TETFSLLDKEPLKIDNVADFSWSPT-----------EP--ILSCFVPELGGGKQPARV 363 + T+ F L+ + LK + DFS++P EP +L+ + PE A + Sbjct: 360 DATKNFMPLEAKALKPSGIRDFSFAPEGVKLQPFRNGDEPSVLLAYWTPETNNSACTATI 419 Query: 364 SLVRIPGKLVMRQKILSNASNCKMHWQHNGEYLAVQVERY 483 + +P V++ L SN +HWQ+ E+L VER+ Sbjct: 420 A--EVPRGRVLKTVNLVQVSNVTLHWQNQAEFLCFNVERH 457
>GAG_SFV3L (P27400) Gag polyprotein (Core polyprotein)| Length = 643 Score = 30.8 bits (68), Expect = 2.0 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 2/114 (1%) Frame = -2 Query: 398 RITSLPGIRTRLTLAGCFPPPNSGTKQDKIGSVGDQLKSATLSIFKGSLSRSENVSVSYT 219 RI G+R L +AG PP+S +G + S++L GS S ++ +T Sbjct: 168 RIQDRLGLRDNLPVAGIQAPPSS--------PIGQPIASSSLQPIPGSSSSPADLDGIWT 219 Query: 218 DITFFPSLAK--YLSSLPPPHLKIGHEIP*TPTLELLVNSSAVPLKSSIILPLL 63 P L++ Y LP G IP P+ V S L + + P++ Sbjct: 220 PRQIDPRLSRVAYNPFLPGSSDGSGGSIPVQPSAPPAVLPSLPSLPAPVSQPII 273
>CFTR_CALMO (Q2QLB4) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1480 Score = 30.4 bits (67), Expect = 2.7 Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 2/116 (1%) Frame = +1 Query: 115 RSSSVGVYGISWPIFRWGGGRDDKYFAKLGKNVI--SVYETETFSLLDKEPLKIDNVADF 288 R S G +SW + + F + KN I S+ FS++ K PL+++ + + Sbjct: 668 RFSLEGDAPVSWTETKKQSFKQTGEFGEKRKNSILNSINSIRKFSIVHKTPLQMNGIEED 727 Query: 289 SWSPTEPILSCFVPELGGGKQPARVSLVRIPGKLVMRQKILSNASNCKMHWQHNGE 456 S P+E LS G R+S++ L +R++ + N H + G+ Sbjct: 728 SDEPSERRLSLIPDSEQGEAILPRISVINTGPALQVRRR--QSVLNMMTHSVNQGQ 781
>PBP4_ECOLI (P24228) Penicillin-binding protein 4 precursor (PBP-4) [Includes:| D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) (DD-peptidase) (DD-carboxypeptidase); D-alanyl-D-alanine-endopeptidase (EC 3.4.99.-) (DD-endopeptidase)] Length = 477 Score = 30.0 bits (66), Expect = 3.5 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 9/70 (12%) Frame = -2 Query: 413 ERIFCRITSLPGIRTRLTLAGCFPP-----PNSGTKQDKIGSVG----DQLKSATLSIFK 261 E +C + +PG R TL GC P P + QD G D+LK A ++ + Sbjct: 213 EAQYCELDVVPGDLNRFTLTGCLPQRSEPLPLAFAVQDGASYAGAILKDELKQAGIT-WS 271 Query: 260 GSLSRSENVS 231 G+L R V+ Sbjct: 272 GTLLRQTQVN 281
>DNAA_DEIRA (Q9RYE7) Chromosomal replication initiator protein dnaA| Length = 466 Score = 30.0 bits (66), Expect = 3.5 Identities = 21/63 (33%), Positives = 32/63 (50%) Frame = -1 Query: 342 TTQFRHKTG*DRLGGRPTEICHVVYLQGLLIKK*ECLSFIHRYNILPKLSKIFIISSTTP 163 TTQFR++ R ++ V +Q L K+ F H +N L + +K I+SS P Sbjct: 210 TTQFRNRY-------RSVDLLLVDDIQFLAGKERTQEEFFHTFNALYESNKQIILSSDRP 262 Query: 162 PED 154 P+D Sbjct: 263 PKD 265
>CFTR_CALJA (Q2QLF9) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1481 Score = 29.6 bits (65), Expect = 4.5 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 2/116 (1%) Frame = +1 Query: 115 RSSSVGVYGISWPIFRWGGGRDDKYFAKLGKNVI--SVYETETFSLLDKEPLKIDNVADF 288 R S G +SW + + F + KN I S+ FS++ K PL+++ + + Sbjct: 668 RFSLEGDAPVSWTETKKQSFKQTGEFGEKRKNSILNSINSIRKFSIVQKTPLQMNGIEED 727 Query: 289 SWSPTEPILSCFVPELGGGKQPARVSLVRIPGKLVMRQKILSNASNCKMHWQHNGE 456 S P E LS G R+S++ L +R++ + N H + G+ Sbjct: 728 SDEPLERRLSLVPDSEQGEAILPRISVINTGPALQVRRR--QSVLNMMTHSVNQGQ 781
>LIFR_RAT (O70535) Leukemia inhibitory factor receptor precursor (LIF| receptor) (LIF-R) (CD118 antigen) Length = 1093 Score = 29.3 bits (64), Expect = 5.9 Identities = 20/84 (23%), Positives = 36/84 (42%) Frame = +1 Query: 199 LGKNVISVYETETFSLLDKEPLKIDNVADFSWSPTEPILSCFVPELGGGKQPARVSLVRI 378 L NV ET SL E L + A+ + + I+S G P++++ + I Sbjct: 565 LSYNVSCSSSEETQSL--SEILDPQHKAEIKVNKNDYIISVVARNSAGSSPPSKIASMEI 622 Query: 379 PGKLVMRQKILSNASNCKMHWQHN 450 P + ++ + + + WQHN Sbjct: 623 PNDDITVEQAVGIGNRIFLSWQHN 646
>CAF1_DROME (Q24572) Probable histone-binding protein Caf1 (Chromatin assembly| factor 1 p55 subunit) (CAF-1 p55 subunit) (dCAF-1) (Nucleosome remodeling factor 55 kDa subunit) (NURF-55) Length = 430 Score = 28.9 bits (63), Expect = 7.7 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = +1 Query: 277 VADFSWSPTEPILSCFVPE 333 ++DFSW+P EP + C V E Sbjct: 381 ISDFSWNPNEPWIICSVSE 399 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,730,612 Number of Sequences: 219361 Number of extensions: 1708274 Number of successful extensions: 4802 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4539 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4793 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
