Clone Name | basd2f03 |
---|---|
Clone Library Name | barley_pub |
>gb|AY106419.1| Zea mays PCO091622 mRNA sequence Length = 1693 Score = 168 bits (85), Expect = 1e-38 Identities = 279/341 (81%), Gaps = 2/341 (0%) Strand = Plus / Plus Query: 128 ttggtgtttatggtatttcatggcctatcttcaggtggggtggtggaagagatgataaat 187 |||| |||| |||| ||||||||||||| ||||||||||||||||||| ||||| |||| Sbjct: 252 ttggggtttctggtgtttcatggcctattttcaggtggggtggtggaaaggatgacaaat 311 Query: 188 attttgctaagcttgggaagaatgttatatctgtgtatgaaactgagacattctcacttc 247 ||||||| | ||||||||||||| | |||||||| || ||||| || |||||||| |||| Sbjct: 312 attttgcgaggcttgggaagaatataatatctgtatacgaaacagatacattctcccttc 371 Query: 248 ttgataaggagcccttgaagatagacaacgtggcagatttcagttggtcgcccaccgagc 307 |||||||| || | ||||| |||| || || | || ||||| ||||| ||||| || | Sbjct: 372 ttgataagaagtctctgaaggtagaaaatgtagtggacttcagctggtctcccactgatc 431 Query: 308 ctatcttatc-ctgttttgtgcctgaattgggtggtgggaagcagcctgccagggtgagc 366 ||||| |||| ||| || ||||||||| |||||||||| || |||||||| |||||||| Sbjct: 432 ctatcatatctctg-ttcgtgcctgaaatgggtggtggaaatcagcctgcgagggtgagt 490 Query: 367 cttgtgcgaattcctggcaaactggtgatgcggcagaaaattctttccaatgctagcaat 426 || |||| ||| ||||||||| || | |||| ||||||| |||| || || || || Sbjct: 491 ctagtgcaaatccctggcaaagaggagctgcgacagaaaaaccttttcagtgtcagtgat 550 Query: 427 tgcaagatgcactggcagcacaatggagaatatcttgctgt 467 || |||||| | ||||| ||| |||||||||||||||||| Sbjct: 551 tgtaagatgtattggcaaaacagtggagaatatcttgctgt 591 Score = 40.1 bits (20), Expect = 6.6 Identities = 41/48 (85%) Strand = Plus / Plus Query: 50 atatctttgatgtaaggagcggtaaaatgatgctggactttaagggaa 97 |||| ||||||||||||| || ||| |||||| ||||||||||||| Sbjct: 174 atatatttgatgtaaggactgggaaagtgatgcgagactttaagggaa 221
>ref|NM_197821.1| Oryza sativa (japonica cultivar-group) putative eukaryotic initiation factor subunit (OSJNBa0095C07.3), mRNA Length = 2383 Score = 153 bits (77), Expect = 6e-34 Identities = 113/125 (90%) Strand = Plus / Plus Query: 131 gtgtttatggtatttcatggcctatcttcaggtggggtggtggaagagatgataaatatt 190 |||||| |||| ||||||||||||| ||||| ||||||||||||| ||| |||||||||| Sbjct: 947 gtgtttctggtgtttcatggcctattttcagatggggtggtggaaaagacgataaatatt 1006 Query: 191 ttgctaagcttgggaagaatgttatatctgtgtatgaaactgagacattctcacttcttg 250 |||| | |||||||||||||||||||||||| ||||| ||||| |||||||| ||||||| Sbjct: 1007 ttgcaaggcttgggaagaatgttatatctgtctatgagactgaaacattctcccttcttg 1066 Query: 251 ataag 255 ||||| Sbjct: 1067 ataag 1071 Score = 129 bits (65), Expect = 9e-27 Identities = 131/153 (85%) Strand = Plus / Plus Query: 321 ttttgtgcctgaattgggtggtgggaagcagcctgccagggtgagccttgtgcgaattcc 380 |||||| ||||| |||||||| || || |||||||| |||||||||||||||| |||||| Sbjct: 1137 ttttgtccctgagttgggtggaggaaaccagcctgcaagggtgagccttgtgcaaattcc 1196 Query: 381 tggcaaactggtgatgcggcagaaaattctttccaatgctagcaattgcaagatgcactg 440 ||||||| || | |||||||||||| |||| || || || ||||||||||| |||| Sbjct: 1197 tggcaaagaggagctgcggcagaaaaaccttttcagtgtcagtgattgcaagatgtactg 1256 Query: 441 gcagcacaatggagaatatcttgctgtccaggt 473 |||| ||| |||||||||||||||||||||||| Sbjct: 1257 gcagaacagtggagaatatcttgctgtccaggt 1289 Score = 44.1 bits (22), Expect = 0.42 Identities = 61/74 (82%) Strand = Plus / Plus Query: 39 ggttgttctccatatctttgatgtaaggagcggtaaaatgatgctggactttaagggaac 98 ||||||||| ||||||||||||| |||| || ||| |||||| |||||||| |||| Sbjct: 855 ggttgttcttaatatctttgatgtgaggactggcaaagtgatgcgcgactttaaaggaag 914 Query: 99 agccgatgaattca 112 || |||||||||| Sbjct: 915 tgctgatgaattca 928
>dbj|AK067998.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013127N17, full insert sequence Length = 2575 Score = 153 bits (77), Expect = 6e-34 Identities = 113/125 (90%) Strand = Plus / Plus Query: 131 gtgtttatggtatttcatggcctatcttcaggtggggtggtggaagagatgataaatatt 190 |||||| |||| ||||||||||||| ||||| ||||||||||||| ||| |||||||||| Sbjct: 1140 gtgtttctggtgtttcatggcctattttcagatggggtggtggaaaagacgataaatatt 1199 Query: 191 ttgctaagcttgggaagaatgttatatctgtgtatgaaactgagacattctcacttcttg 250 |||| | |||||||||||||||||||||||| ||||| ||||| |||||||| ||||||| Sbjct: 1200 ttgcaaggcttgggaagaatgttatatctgtctatgagactgaaacattctcccttcttg 1259 Query: 251 ataag 255 ||||| Sbjct: 1260 ataag 1264 Score = 129 bits (65), Expect = 9e-27 Identities = 131/153 (85%) Strand = Plus / Plus Query: 321 ttttgtgcctgaattgggtggtgggaagcagcctgccagggtgagccttgtgcgaattcc 380 |||||| ||||| |||||||| || || |||||||| |||||||||||||||| |||||| Sbjct: 1330 ttttgtccctgagttgggtggaggaaaccagcctgcaagggtgagccttgtgcaaattcc 1389 Query: 381 tggcaaactggtgatgcggcagaaaattctttccaatgctagcaattgcaagatgcactg 440 ||||||| || | |||||||||||| |||| || || || ||||||||||| |||| Sbjct: 1390 tggcaaagaggagctgcggcagaaaaaccttttcagtgtcagtgattgcaagatgtactg 1449 Query: 441 gcagcacaatggagaatatcttgctgtccaggt 473 |||| ||| |||||||||||||||||||||||| Sbjct: 1450 gcagaacagtggagaatatcttgctgtccaggt 1482 Score = 44.1 bits (22), Expect = 0.42 Identities = 61/74 (82%) Strand = Plus / Plus Query: 39 ggttgttctccatatctttgatgtaaggagcggtaaaatgatgctggactttaagggaac 98 ||||||||| ||||||||||||| |||| || ||| |||||| |||||||| |||| Sbjct: 1048 ggttgttcttaatatctttgatgtgaggactggcaaagtgatgcgcgactttaaaggaag 1107 Query: 99 agccgatgaattca 112 || |||||||||| Sbjct: 1108 tgctgatgaattca 1121
>gb|AC077693.19| Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete sequence Length = 187707 Score = 121 bits (61), Expect = 2e-24 Identities = 85/93 (91%) Strand = Plus / Minus Query: 163 tggggtggtggaagagatgataaatattttgctaagcttgggaagaatgttatatctgtg 222 ||||||||||||| ||| |||||||||||||| | |||||||||||||||||||||||| Sbjct: 50187 tggggtggtggaaaagacgataaatattttgcaaggcttgggaagaatgttatatctgtc 50128 Query: 223 tatgaaactgagacattctcacttcttgataag 255 ||||| ||||| |||||||| |||||||||||| Sbjct: 50127 tatgagactgaaacattctcccttcttgataag 50095 Score = 99.6 bits (50), Expect = 8e-18 Identities = 98/114 (85%) Strand = Plus / Minus Query: 360 ggtgagccttgtgcgaattcctggcaaactggtgatgcggcagaaaattctttccaatgc 419 |||||||||||||| ||||||||||||| || | |||||||||||| |||| || || Sbjct: 49903 ggtgagccttgtgcaaattcctggcaaagaggagctgcggcagaaaaaccttttcagtgt 49844 Query: 420 tagcaattgcaagatgcactggcagcacaatggagaatatcttgctgtccaggt 473 || ||||||||||| |||||||| ||| |||||||||||||||||||||||| Sbjct: 49843 cagtgattgcaagatgtactggcagaacagtggagaatatcttgctgtccaggt 49790 Score = 44.1 bits (22), Expect = 0.42 Identities = 61/74 (82%) Strand = Plus / Minus Query: 39 ggttgttctccatatctttgatgtaaggagcggtaaaatgatgctggactttaagggaac 98 ||||||||| ||||||||||||| |||| || ||| |||||| |||||||| |||| Sbjct: 50407 ggttgttcttaatatctttgatgtgaggactggcaaagtgatgcgcgactttaaaggaag 50348 Query: 99 agccgatgaattca 112 || |||||||||| Sbjct: 50347 tgctgatgaattca 50334 Score = 44.1 bits (22), Expect = 0.42 Identities = 31/34 (91%) Strand = Plus / Minus Query: 131 gtgtttatggtatttcatggcctatcttcaggtg 164 |||||| |||| ||||||||||||| |||||||| Sbjct: 50315 gtgtttctggtgtttcatggcctattttcaggtg 50282
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 121 bits (61), Expect = 2e-24 Identities = 85/93 (91%) Strand = Plus / Minus Query: 163 tggggtggtggaagagatgataaatattttgctaagcttgggaagaatgttatatctgtg 222 ||||||||||||| ||| |||||||||||||| | |||||||||||||||||||||||| Sbjct: 22045643 tggggtggtggaaaagacgataaatattttgcaaggcttgggaagaatgttatatctgtc 22045584 Query: 223 tatgaaactgagacattctcacttcttgataag 255 ||||| ||||| |||||||| |||||||||||| Sbjct: 22045583 tatgagactgaaacattctcccttcttgataag 22045551 Score = 99.6 bits (50), Expect = 8e-18 Identities = 98/114 (85%) Strand = Plus / Minus Query: 360 ggtgagccttgtgcgaattcctggcaaactggtgatgcggcagaaaattctttccaatgc 419 |||||||||||||| ||||||||||||| || | |||||||||||| |||| || || Sbjct: 22045359 ggtgagccttgtgcaaattcctggcaaagaggagctgcggcagaaaaaccttttcagtgt 22045300 Query: 420 tagcaattgcaagatgcactggcagcacaatggagaatatcttgctgtccaggt 473 || ||||||||||| |||||||| ||| |||||||||||||||||||||||| Sbjct: 22045299 cagtgattgcaagatgtactggcagaacagtggagaatatcttgctgtccaggt 22045246 Score = 44.1 bits (22), Expect = 0.42 Identities = 61/74 (82%) Strand = Plus / Minus Query: 39 ggttgttctccatatctttgatgtaaggagcggtaaaatgatgctggactttaagggaac 98 ||||||||| ||||||||||||| |||| || ||| |||||| |||||||| |||| Sbjct: 22045863 ggttgttcttaatatctttgatgtgaggactggcaaagtgatgcgcgactttaaaggaag 22045804 Query: 99 agccgatgaattca 112 || |||||||||| Sbjct: 22045803 tgctgatgaattca 22045790 Score = 44.1 bits (22), Expect = 0.42 Identities = 31/34 (91%) Strand = Plus / Minus Query: 131 gtgtttatggtatttcatggcctatcttcaggtg 164 |||||| |||| ||||||||||||| |||||||| Sbjct: 22045771 gtgtttctggtgtttcatggcctattttcaggtg 22045738
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 121 bits (61), Expect = 2e-24 Identities = 85/93 (91%) Strand = Plus / Minus Query: 163 tggggtggtggaagagatgataaatattttgctaagcttgggaagaatgttatatctgtg 222 ||||||||||||| ||| |||||||||||||| | |||||||||||||||||||||||| Sbjct: 22057306 tggggtggtggaaaagacgataaatattttgcaaggcttgggaagaatgttatatctgtc 22057247 Query: 223 tatgaaactgagacattctcacttcttgataag 255 ||||| ||||| |||||||| |||||||||||| Sbjct: 22057246 tatgagactgaaacattctcccttcttgataag 22057214 Score = 99.6 bits (50), Expect = 8e-18 Identities = 98/114 (85%) Strand = Plus / Minus Query: 360 ggtgagccttgtgcgaattcctggcaaactggtgatgcggcagaaaattctttccaatgc 419 |||||||||||||| ||||||||||||| || | |||||||||||| |||| || || Sbjct: 22057022 ggtgagccttgtgcaaattcctggcaaagaggagctgcggcagaaaaaccttttcagtgt 22056963 Query: 420 tagcaattgcaagatgcactggcagcacaatggagaatatcttgctgtccaggt 473 || ||||||||||| |||||||| ||| |||||||||||||||||||||||| Sbjct: 22056962 cagtgattgcaagatgtactggcagaacagtggagaatatcttgctgtccaggt 22056909 Score = 44.1 bits (22), Expect = 0.42 Identities = 61/74 (82%) Strand = Plus / Minus Query: 39 ggttgttctccatatctttgatgtaaggagcggtaaaatgatgctggactttaagggaac 98 ||||||||| ||||||||||||| |||| || ||| |||||| |||||||| |||| Sbjct: 22057526 ggttgttcttaatatctttgatgtgaggactggcaaagtgatgcgcgactttaaaggaag 22057467 Query: 99 agccgatgaattca 112 || |||||||||| Sbjct: 22057466 tgctgatgaattca 22057453 Score = 44.1 bits (22), Expect = 0.42 Identities = 31/34 (91%) Strand = Plus / Minus Query: 131 gtgtttatggtatttcatggcctatcttcaggtg 164 |||||| |||| ||||||||||||| |||||||| Sbjct: 22057434 gtgtttctggtgtttcatggcctattttcaggtg 22057401
>ref|NM_122646.2| Arabidopsis thaliana TIF3B1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B); nucleic acid binding / translation initiation factor AT5G27640 (TIF3B1) transcript variant AT5G27640.1 mRNA, complete cds Length = 2848 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 148 tggcctatcttcaggtggggtggtggaagagatgataaatattttgctaagctt 201 |||||| | ||||| |||| |||||||| |||||||||||| ||||| |||||| Sbjct: 1070 tggcctgttttcagatgggctggtggaaaagatgataaatactttgccaagctt 1123
>ref|NM_001036877.1| Arabidopsis thaliana TIF3B1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B); nucleic acid binding / translation initiation factor AT5G27640 (TIF3B1) transcript variant AT5G27640.2 mRNA, complete cds Length = 2927 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 148 tggcctatcttcaggtggggtggtggaagagatgataaatattttgctaagctt 201 |||||| | ||||| |||| |||||||| |||||||||||| ||||| |||||| Sbjct: 1149 tggcctgttttcagatgggctggtggaaaagatgataaatactttgccaagctt 1202
>gb|BT011831.1| Arabidopsis thaliana At5g27640 mRNA sequence Length = 2217 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 148 tggcctatcttcaggtggggtggtggaagagatgataaatattttgctaagctt 201 |||||| | ||||| |||| |||||||| |||||||||||| ||||| |||||| Sbjct: 1024 tggcctgttttcagatgggctggtggaaaagatgataaatactttgccaagctt 1077
>gb|AY102149.1| Arabidopsis thaliana AT5g27640/F15A18_100 mRNA, complete cds Length = 2139 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 148 tggcctatcttcaggtggggtggtggaagagatgataaatattttgctaagctt 201 |||||| | ||||| |||| |||||||| |||||||||||| ||||| |||||| Sbjct: 949 tggcctgttttcagatgggctggtggaaaagatgataaatactttgccaagctt 1002
>gb|AF378883.1|AF378883 Arabidopsis thaliana AT5g27640/F15A18_100 mRNA, complete cds Length = 2364 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 148 tggcctatcttcaggtggggtggtggaagagatgataaatattttgctaagctt 201 |||||| | ||||| |||| |||||||| |||||||||||| ||||| |||||| Sbjct: 1070 tggcctgttttcagatgggctggtggaaaagatgataaatactttgccaagctt 1123
>gb|AF285834.1|AF285834 Arabidopsis thaliana eukaryotic initiation factor 3B1 subunit (TIF3B1) mRNA, complete cds Length = 2298 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 148 tggcctatcttcaggtggggtggtggaagagatgataaatattttgctaagctt 201 |||||| | ||||| |||| |||||||| |||||||||||| ||||| |||||| Sbjct: 949 tggcctgttttcagatgggctggtggaaaagatgataaatactttgccaagctt 1002
>gb|AC137830.6| Medicago truncatula clone mth2-33g10, complete sequence Length = 113855 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 427 tgcaagatgcactggcagcacaatggagaatatcttgctgt 467 ||||||||| |||||||| |||||||||||| |||||||| Sbjct: 105700 tgcaagatgtactggcagagcaatggagaataccttgctgt 105660
>gb|AC069556.4|AC069556 Genomic Sequence For Arabidopsis thaliana Clone T1G16 From Chromosome V, complete sequence Length = 93672 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 163 tggggtggtggaagagatgataaatattttgctaagctt 201 |||| |||||||| |||||||||||| ||||| |||||| Sbjct: 2912 tgggctggtggaaaagatgataaatactttgccaagctt 2874
>gb|AC007478.1|AC007478 Arabidopsis thaliana BAC F15A18 from chromosome V near 68.5 cM, complete sequence Length = 107931 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 163 tggggtggtggaagagatgataaatattttgctaagctt 201 |||| |||||||| |||||||||||| ||||| |||||| Sbjct: 91946 tgggctggtggaaaagatgataaatactttgccaagctt 91908
>gb|AC114984.18| Mus musculus chromosome 18, clone RP23-248F9, complete sequence Length = 185563 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 449 atggagaatatcttgctgtcca 470 |||||||||||||||||||||| Sbjct: 15519 atggagaatatcttgctgtcca 15540
>gb|AC132357.3| Mus musculus BAC clone RP24-120G2 from chromosome 18, complete sequence Length = 189088 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 449 atggagaatatcttgctgtcca 470 |||||||||||||||||||||| Sbjct: 144750 atggagaatatcttgctgtcca 144729
>gb|AC164154.2| Mus musculus chromosome 18, clone RP23-60G12, complete sequence Length = 238662 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 449 atggagaatatcttgctgtcca 470 |||||||||||||||||||||| Sbjct: 113192 atggagaatatcttgctgtcca 113171
>gb|AC164106.3| Mus musculus BAC clone RP23-445D20 from chromosome 18, complete sequence Length = 195721 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 449 atggagaatatcttgctgtcca 470 |||||||||||||||||||||| Sbjct: 49869 atggagaatatcttgctgtcca 49848
>ref|NM_122479.2| Arabidopsis thaliana EIF3B-2; nucleic acid binding / translation initiation factor AT5G25780 (EIF3B-2) mRNA, complete cds Length = 2405 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Plus Query: 148 tggcctatcttcaggtggggtggtggaagagatgataaatattttgctaagct 200 |||||| | ||||| |||| ||| |||| |||||||||||| ||||| ||||| Sbjct: 1059 tggcctgttttcagatgggctggcggaaaagatgataaatactttgccaagct 1111
>gb|AC135288.1| Solanum demissum chromosome 5 BAC PGEC219 genomic sequence, complete sequence Length = 124895 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 175 agagatgataaatattttgctaagc 199 |||||| |||||||||||||||||| Sbjct: 39552 agagattataaatattttgctaagc 39576
>emb|AL159159.21| Human DNA sequence from clone RP11-88J11 on chromosome 13 Contains the 3' end of the CDK8 gene for cyclin-dependent kinase 8, complete sequence Length = 144626 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 336 gggtggtgggaagcagcctgccagg 360 ||||| ||||||||||||||||||| Sbjct: 98155 gggtgatgggaagcagcctgccagg 98179
>emb|AL033127.1|SPCC622 S.pombe chromosome III cosmid c622 Length = 40901 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 179 atgataaatattttgctaagcttgg 203 |||||||||||||||| |||||||| Sbjct: 26797 atgataaatattttgcaaagcttgg 26821
>emb|AL844142.5| Mouse DNA sequence from clone RP23-355C24 on chromosome 4, complete sequence Length = 121550 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 120 ttcaagtgttggtgtttatgg 140 ||||||||||||||||||||| Sbjct: 91715 ttcaagtgttggtgtttatgg 91735
>emb|BX470199.6| Zebrafish DNA sequence from clone CH211-226M7 in linkage group 11, complete sequence Length = 197146 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 tcttcaggtggggtggtggaa 175 ||||||||||||||||||||| Sbjct: 125127 tcttcaggtggggtggtggaa 125147
>ref|NM_001023176.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPCC622.14), partial mRNA Length = 930 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 179 atgataaatattttgctaagcttgg 203 |||||||||||||||| |||||||| Sbjct: 452 atgataaatattttgcaaagcttgg 476
>gb|BT002393.1| Arabidopsis thaliana eukaryotic translation initiation factor - like protein (At5g25780) mRNA, complete cds Length = 2405 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Plus Query: 148 tggcctatcttcaggtggggtggtggaagagatgataaatattttgctaagct 200 |||||| | ||||| |||| ||| |||| |||||||||||| ||||| ||||| Sbjct: 1059 tggcctgttttcagatgggctggcggaaaagatgataaatactttgccaagct 1111
>emb|AJ306825.1|PTR306825 Populus tremula x Populus tremuloides mRNA for aux/IAA protein (IAA2 gene) Length = 1763 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 157 ttcaggtggggtggtggaagagatgataa 185 |||||||||||||||| ||| |||||||| Sbjct: 1372 ttcaggtggggtggtgcaagggatgataa 1400
>emb|BX005467.6| Mouse DNA sequence from clone RP23-74L11 on chromosome X, complete sequence Length = 233590 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 227 aaactgagacattctcacttc 247 ||||||||||||||||||||| Sbjct: 199746 aaactgagacattctcacttc 199766
>gb|AC016019.4| Drosophila melanogaster clone BACR08P05, complete sequence Length = 192157 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 ggcagaaaattctttccaat 417 |||||||||||||||||||| Sbjct: 32276 ggcagaaaattctttccaat 32257
>gb|AY359920.1| Strombomonas borysteniensis strain S10 large subunit ribosomal RNA gene, partial sequence Length = 1434 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 gtggtgggaagcagcctgccaggg 361 ||||||| |||||||||||||||| Sbjct: 714 gtggtggcaagcagcctgccaggg 737
>gb|AC101983.16| Mus musculus chromosome 6, clone RP24-352A8, complete sequence Length = 153860 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 tcttcaggtggggtggtgga 174 |||||||||||||||||||| Sbjct: 37866 tcttcaggtggggtggtgga 37885
>gb|AC140783.4| Mus musculus BAC clone RP24-253K16 from chromosome 15, complete sequence Length = 165903 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 cagaaaattctttccaatgc 419 |||||||||||||||||||| Sbjct: 42563 cagaaaattctttccaatgc 42544
>gb|AC099711.5| Mus musculus chromosome 15, clone RP23-397C11, complete sequence Length = 207144 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 cagaaaattctttccaatgc 419 |||||||||||||||||||| Sbjct: 38620 cagaaaattctttccaatgc 38639
>gb|AC137905.8| Mus musculus chromosome 15, clone RP23-334B11, complete sequence Length = 210548 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 cagaaaattctttccaatgc 419 |||||||||||||||||||| Sbjct: 5020 cagaaaattctttccaatgc 5001
>gb|AC105066.12| Mus musculus chromosome 8, clone RP23-158A22, complete sequence Length = 238527 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 tctgtgtatgaaactgagac 236 |||||||||||||||||||| Sbjct: 174017 tctgtgtatgaaactgagac 173998
>emb|Z99292.1|SPAC17A2 S.pombe chromosome I cosmid c17A2 Length = 36642 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 gatgataaatattttgctaa 197 |||||||||||||||||||| Sbjct: 4843 gatgataaatattttgctaa 4824
>ref|XM_805258.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053509719.56) partial mRNA Length = 2175 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 335 tgggtggtgggaagcagcctgccagggt 362 ||||||||||||||| |||||| ||||| Sbjct: 368 tgggtggtgggaagcggcctgcaagggt 395
>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome Length = 1522076 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 gaagagatgataaatatttt 192 |||||||||||||||||||| Sbjct: 1236362 gaagagatgataaatatttt 1236343
>gb|BC062389.1| Rattus norvegicus similar to RIKEN cDNA 5830404H04, mRNA (cDNA clone MGC:72630 IMAGE:5620907), complete cds Length = 3814 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 tcttcaggtggggtggtggaagag 178 ||||||||||||||||||| |||| Sbjct: 1919 tcttcaggtggggtggtggcagag 1896
>gb|AE003791.5| Drosophila melanogaster chromosome 2R, section 59 of 73 of the complete sequence Length = 263535 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 ggcagaaaattctttccaat 417 |||||||||||||||||||| Sbjct: 231260 ggcagaaaattctttccaat 231279
>gb|AC005405.1|AC005405 BAC F18A17 from chromosome V containing TINY at 60.5 cM, complete sequence Length = 94362 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 157 ttcaggtggggtggtggaagagatgataaatattttgctaagct 200 ||||| |||| ||| |||| |||||||||||| ||||| ||||| Sbjct: 7804 ttcagatgggctggcggaaaagatgataaatactttgccaagct 7761
>ref|NM_199391.1| Rattus norvegicus similar to RIKEN cDNA 5830404H04 (RGD735112), mRNA Length = 3814 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 tcttcaggtggggtggtggaagag 178 ||||||||||||||||||| |||| Sbjct: 1919 tcttcaggtggggtggtggcagag 1896
>gb|AC151909.5| Mus musculus BAC clone RP23-60H14 from chromosome 8, complete sequence Length = 208855 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 tctgtgtatgaaactgagac 236 |||||||||||||||||||| Sbjct: 177248 tctgtgtatgaaactgagac 177267 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,945,118 Number of Sequences: 3902068 Number of extensions: 4945118 Number of successful extensions: 93923 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93779 Number of HSP's gapped (non-prelim): 138 length of query: 489 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 467 effective length of database: 17,147,199,772 effective search space: 8007742293524 effective search space used: 8007742293524 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)