ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2f03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106419.1| Zea mays PCO091622 mRNA sequence 168 1e-38
2ref|NM_197821.1| Oryza sativa (japonica cultivar-group) putative... 153 6e-34
3dbj|AK067998.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 6e-34
4gb|AC077693.19| Oryza sativa chromosome 10 BAC OSJNBa0095C07 gen... 121 2e-24
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 121 2e-24
7ref|NM_122646.2| Arabidopsis thaliana TIF3B1 (EUKARYOTIC TRANSLA... 52 0.002
8ref|NM_001036877.1| Arabidopsis thaliana TIF3B1 (EUKARYOTIC TRAN... 52 0.002
9gb|BT011831.1| Arabidopsis thaliana At5g27640 mRNA sequence 52 0.002
10gb|AY102149.1| Arabidopsis thaliana AT5g27640/F15A18_100 mRNA, c... 52 0.002
11gb|AF378883.1|AF378883 Arabidopsis thaliana AT5g27640/F15A18_100... 52 0.002
12gb|AF285834.1|AF285834 Arabidopsis thaliana eukaryotic initiatio... 52 0.002
13gb|AC137830.6| Medicago truncatula clone mth2-33g10, complete se... 50 0.007
14gb|AC069556.4|AC069556 Genomic Sequence For Arabidopsis thaliana... 46 0.11
15gb|AC007478.1|AC007478 Arabidopsis thaliana BAC F15A18 from chro... 46 0.11
16gb|AC114984.18| Mus musculus chromosome 18, clone RP23-248F9, co... 44 0.42
17gb|AC132357.3| Mus musculus BAC clone RP24-120G2 from chromosome... 44 0.42
18gb|AC164154.2| Mus musculus chromosome 18, clone RP23-60G12, com... 44 0.42
19gb|AC164106.3| Mus musculus BAC clone RP23-445D20 from chromosom... 44 0.42
20ref|NM_122479.2| Arabidopsis thaliana EIF3B-2; nucleic acid bind... 42 1.7
21gb|AC135288.1| Solanum demissum chromosome 5 BAC PGEC219 genomic... 42 1.7
22emb|AL159159.21| Human DNA sequence from clone RP11-88J11 on chr... 42 1.7
23emb|AL033127.1|SPCC622 S.pombe chromosome III cosmid c622 42 1.7
24emb|AL844142.5| Mouse DNA sequence from clone RP23-355C24 on chr... 42 1.7
25emb|BX470199.6| Zebrafish DNA sequence from clone CH211-226M7 in... 42 1.7
26ref|NM_001023176.1| Schizosaccharomyces pombe 972h- hypothetical... 42 1.7
27gb|BT002393.1| Arabidopsis thaliana eukaryotic translation initi... 42 1.7
28emb|AJ306825.1|PTR306825 Populus tremula x Populus tremuloides m... 42 1.7
29emb|BX005467.6| Mouse DNA sequence from clone RP23-74L11 on chro... 42 1.7
30gb|AC016019.4| Drosophila melanogaster clone BACR08P05, complete... 40 6.6
31gb|AY359920.1| Strombomonas borysteniensis strain S10 large subu... 40 6.6
32gb|AC101983.16| Mus musculus chromosome 6, clone RP24-352A8, com... 40 6.6
33gb|AC140783.4| Mus musculus BAC clone RP24-253K16 from chromosom... 40 6.6
34gb|AC099711.5| Mus musculus chromosome 15, clone RP23-397C11, co... 40 6.6
35gb|AC137905.8| Mus musculus chromosome 15, clone RP23-334B11, co... 40 6.6
36gb|AC105066.12| Mus musculus chromosome 8, clone RP23-158A22, co... 40 6.6
37emb|Z99292.1|SPAC17A2 S.pombe chromosome I cosmid c17A2 40 6.6
38ref|XM_805258.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 6.6
39gb|CP000087.1| Rickettsia bellii RML369-C, complete genome 40 6.6
40gb|BC062389.1| Rattus norvegicus similar to RIKEN cDNA 5830404H0... 40 6.6
41gb|AE003791.5| Drosophila melanogaster chromosome 2R, section 59... 40 6.6
42gb|AC005405.1|AC005405 BAC F18A17 from chromosome V containing T... 40 6.6
43ref|NM_199391.1| Rattus norvegicus similar to RIKEN cDNA 5830404... 40 6.6
44gb|AC151909.5| Mus musculus BAC clone RP23-60H14 from chromosome... 40 6.6 
>gb|AY106419.1| Zea mays PCO091622 mRNA sequence
          Length = 1693

 Score =  168 bits (85), Expect = 1e-38
 Identities = 279/341 (81%), Gaps = 2/341 (0%)
 Strand = Plus / Plus

                                                                       
Query: 128 ttggtgtttatggtatttcatggcctatcttcaggtggggtggtggaagagatgataaat 187
           |||| |||| |||| ||||||||||||| |||||||||||||||||||  ||||| ||||
Sbjct: 252 ttggggtttctggtgtttcatggcctattttcaggtggggtggtggaaaggatgacaaat 311

                                                                       
Query: 188 attttgctaagcttgggaagaatgttatatctgtgtatgaaactgagacattctcacttc 247
           ||||||| | ||||||||||||| | |||||||| || ||||| || |||||||| ||||
Sbjct: 312 attttgcgaggcttgggaagaatataatatctgtatacgaaacagatacattctcccttc 371

                                                                       
Query: 248 ttgataaggagcccttgaagatagacaacgtggcagatttcagttggtcgcccaccgagc 307
           |||||||| || |  ||||| |||| || || |  || ||||| ||||| ||||| || |
Sbjct: 372 ttgataagaagtctctgaaggtagaaaatgtagtggacttcagctggtctcccactgatc 431

                                                                       
Query: 308 ctatcttatc-ctgttttgtgcctgaattgggtggtgggaagcagcctgccagggtgagc 366
           ||||| |||| ||| || ||||||||| |||||||||| || |||||||| |||||||| 
Sbjct: 432 ctatcatatctctg-ttcgtgcctgaaatgggtggtggaaatcagcctgcgagggtgagt 490

                                                                       
Query: 367 cttgtgcgaattcctggcaaactggtgatgcggcagaaaattctttccaatgctagcaat 426
           || |||| ||| |||||||||  || | |||| |||||||  |||| || ||  ||  ||
Sbjct: 491 ctagtgcaaatccctggcaaagaggagctgcgacagaaaaaccttttcagtgtcagtgat 550

                                                    
Query: 427 tgcaagatgcactggcagcacaatggagaatatcttgctgt 467
           || |||||| | |||||  ||| ||||||||||||||||||
Sbjct: 551 tgtaagatgtattggcaaaacagtggagaatatcttgctgt 591



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 50  atatctttgatgtaaggagcggtaaaatgatgctggactttaagggaa 97
           |||| |||||||||||||  || ||| ||||||  |||||||||||||
Sbjct: 174 atatatttgatgtaaggactgggaaagtgatgcgagactttaagggaa 221
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>ref|NM_197821.1| Oryza sativa (japonica cultivar-group) putative eukaryotic initiation
            factor subunit (OSJNBa0095C07.3), mRNA
          Length = 2383

 Score =  153 bits (77), Expect = 6e-34
 Identities = 113/125 (90%)
 Strand = Plus / Plus

                                                                        
Query: 131  gtgtttatggtatttcatggcctatcttcaggtggggtggtggaagagatgataaatatt 190
            |||||| |||| ||||||||||||| ||||| ||||||||||||| ||| ||||||||||
Sbjct: 947  gtgtttctggtgtttcatggcctattttcagatggggtggtggaaaagacgataaatatt 1006

                                                                        
Query: 191  ttgctaagcttgggaagaatgttatatctgtgtatgaaactgagacattctcacttcttg 250
            |||| | |||||||||||||||||||||||| ||||| ||||| |||||||| |||||||
Sbjct: 1007 ttgcaaggcttgggaagaatgttatatctgtctatgagactgaaacattctcccttcttg 1066

                 
Query: 251  ataag 255
            |||||
Sbjct: 1067 ataag 1071



 Score =  129 bits (65), Expect = 9e-27
 Identities = 131/153 (85%)
 Strand = Plus / Plus

                                                                        
Query: 321  ttttgtgcctgaattgggtggtgggaagcagcctgccagggtgagccttgtgcgaattcc 380
            |||||| ||||| |||||||| || || |||||||| |||||||||||||||| ||||||
Sbjct: 1137 ttttgtccctgagttgggtggaggaaaccagcctgcaagggtgagccttgtgcaaattcc 1196

                                                                        
Query: 381  tggcaaactggtgatgcggcagaaaattctttccaatgctagcaattgcaagatgcactg 440
            |||||||  || | ||||||||||||  |||| || ||  ||  ||||||||||| ||||
Sbjct: 1197 tggcaaagaggagctgcggcagaaaaaccttttcagtgtcagtgattgcaagatgtactg 1256

                                             
Query: 441  gcagcacaatggagaatatcttgctgtccaggt 473
            |||| ||| ||||||||||||||||||||||||
Sbjct: 1257 gcagaacagtggagaatatcttgctgtccaggt 1289



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 61/74 (82%)
 Strand = Plus / Plus

                                                                       
Query: 39  ggttgttctccatatctttgatgtaaggagcggtaaaatgatgctggactttaagggaac 98
           |||||||||  ||||||||||||| ||||  || ||| ||||||  |||||||| |||| 
Sbjct: 855 ggttgttcttaatatctttgatgtgaggactggcaaagtgatgcgcgactttaaaggaag 914

                         
Query: 99  agccgatgaattca 112
            || ||||||||||
Sbjct: 915 tgctgatgaattca 928
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>dbj|AK067998.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013127N17, full
            insert sequence
          Length = 2575

 Score =  153 bits (77), Expect = 6e-34
 Identities = 113/125 (90%)
 Strand = Plus / Plus

                                                                        
Query: 131  gtgtttatggtatttcatggcctatcttcaggtggggtggtggaagagatgataaatatt 190
            |||||| |||| ||||||||||||| ||||| ||||||||||||| ||| ||||||||||
Sbjct: 1140 gtgtttctggtgtttcatggcctattttcagatggggtggtggaaaagacgataaatatt 1199

                                                                        
Query: 191  ttgctaagcttgggaagaatgttatatctgtgtatgaaactgagacattctcacttcttg 250
            |||| | |||||||||||||||||||||||| ||||| ||||| |||||||| |||||||
Sbjct: 1200 ttgcaaggcttgggaagaatgttatatctgtctatgagactgaaacattctcccttcttg 1259

                 
Query: 251  ataag 255
            |||||
Sbjct: 1260 ataag 1264



 Score =  129 bits (65), Expect = 9e-27
 Identities = 131/153 (85%)
 Strand = Plus / Plus

                                                                        
Query: 321  ttttgtgcctgaattgggtggtgggaagcagcctgccagggtgagccttgtgcgaattcc 380
            |||||| ||||| |||||||| || || |||||||| |||||||||||||||| ||||||
Sbjct: 1330 ttttgtccctgagttgggtggaggaaaccagcctgcaagggtgagccttgtgcaaattcc 1389

                                                                        
Query: 381  tggcaaactggtgatgcggcagaaaattctttccaatgctagcaattgcaagatgcactg 440
            |||||||  || | ||||||||||||  |||| || ||  ||  ||||||||||| ||||
Sbjct: 1390 tggcaaagaggagctgcggcagaaaaaccttttcagtgtcagtgattgcaagatgtactg 1449

                                             
Query: 441  gcagcacaatggagaatatcttgctgtccaggt 473
            |||| ||| ||||||||||||||||||||||||
Sbjct: 1450 gcagaacagtggagaatatcttgctgtccaggt 1482



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 61/74 (82%)
 Strand = Plus / Plus

                                                                        
Query: 39   ggttgttctccatatctttgatgtaaggagcggtaaaatgatgctggactttaagggaac 98
            |||||||||  ||||||||||||| ||||  || ||| ||||||  |||||||| |||| 
Sbjct: 1048 ggttgttcttaatatctttgatgtgaggactggcaaagtgatgcgcgactttaaaggaag 1107

                          
Query: 99   agccgatgaattca 112
             || ||||||||||
Sbjct: 1108 tgctgatgaattca 1121
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>gb|AC077693.19| Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete
             sequence
          Length = 187707

 Score =  121 bits (61), Expect = 2e-24
 Identities = 85/93 (91%)
 Strand = Plus / Minus

                                                                         
Query: 163   tggggtggtggaagagatgataaatattttgctaagcttgggaagaatgttatatctgtg 222
             ||||||||||||| ||| |||||||||||||| | |||||||||||||||||||||||| 
Sbjct: 50187 tggggtggtggaaaagacgataaatattttgcaaggcttgggaagaatgttatatctgtc 50128

                                              
Query: 223   tatgaaactgagacattctcacttcttgataag 255
             ||||| ||||| |||||||| ||||||||||||
Sbjct: 50127 tatgagactgaaacattctcccttcttgataag 50095



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 98/114 (85%)
 Strand = Plus / Minus

                                                                         
Query: 360   ggtgagccttgtgcgaattcctggcaaactggtgatgcggcagaaaattctttccaatgc 419
             |||||||||||||| |||||||||||||  || | ||||||||||||  |||| || || 
Sbjct: 49903 ggtgagccttgtgcaaattcctggcaaagaggagctgcggcagaaaaaccttttcagtgt 49844

                                                                   
Query: 420   tagcaattgcaagatgcactggcagcacaatggagaatatcttgctgtccaggt 473
              ||  ||||||||||| |||||||| ||| ||||||||||||||||||||||||
Sbjct: 49843 cagtgattgcaagatgtactggcagaacagtggagaatatcttgctgtccaggt 49790



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                         
Query: 39    ggttgttctccatatctttgatgtaaggagcggtaaaatgatgctggactttaagggaac 98
             |||||||||  ||||||||||||| ||||  || ||| ||||||  |||||||| |||| 
Sbjct: 50407 ggttgttcttaatatctttgatgtgaggactggcaaagtgatgcgcgactttaaaggaag 50348

                           
Query: 99    agccgatgaattca 112
              || ||||||||||
Sbjct: 50347 tgctgatgaattca 50334



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 131   gtgtttatggtatttcatggcctatcttcaggtg 164
             |||||| |||| ||||||||||||| ||||||||
Sbjct: 50315 gtgtttctggtgtttcatggcctattttcaggtg 50282
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  121 bits (61), Expect = 2e-24
 Identities = 85/93 (91%)
 Strand = Plus / Minus

                                                                            
Query: 163      tggggtggtggaagagatgataaatattttgctaagcttgggaagaatgttatatctgtg 222
                ||||||||||||| ||| |||||||||||||| | |||||||||||||||||||||||| 
Sbjct: 22045643 tggggtggtggaaaagacgataaatattttgcaaggcttgggaagaatgttatatctgtc 22045584

                                                 
Query: 223      tatgaaactgagacattctcacttcttgataag 255
                ||||| ||||| |||||||| ||||||||||||
Sbjct: 22045583 tatgagactgaaacattctcccttcttgataag 22045551



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 98/114 (85%)
 Strand = Plus / Minus

                                                                            
Query: 360      ggtgagccttgtgcgaattcctggcaaactggtgatgcggcagaaaattctttccaatgc 419
                |||||||||||||| |||||||||||||  || | ||||||||||||  |||| || || 
Sbjct: 22045359 ggtgagccttgtgcaaattcctggcaaagaggagctgcggcagaaaaaccttttcagtgt 22045300

                                                                      
Query: 420      tagcaattgcaagatgcactggcagcacaatggagaatatcttgctgtccaggt 473
                 ||  ||||||||||| |||||||| ||| ||||||||||||||||||||||||
Sbjct: 22045299 cagtgattgcaagatgtactggcagaacagtggagaatatcttgctgtccaggt 22045246



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                            
Query: 39       ggttgttctccatatctttgatgtaaggagcggtaaaatgatgctggactttaagggaac 98
                |||||||||  ||||||||||||| ||||  || ||| ||||||  |||||||| |||| 
Sbjct: 22045863 ggttgttcttaatatctttgatgtgaggactggcaaagtgatgcgcgactttaaaggaag 22045804

                              
Query: 99       agccgatgaattca 112
                 || ||||||||||
Sbjct: 22045803 tgctgatgaattca 22045790



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 131      gtgtttatggtatttcatggcctatcttcaggtg 164
                |||||| |||| ||||||||||||| ||||||||
Sbjct: 22045771 gtgtttctggtgtttcatggcctattttcaggtg 22045738
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  121 bits (61), Expect = 2e-24
 Identities = 85/93 (91%)
 Strand = Plus / Minus

                                                                            
Query: 163      tggggtggtggaagagatgataaatattttgctaagcttgggaagaatgttatatctgtg 222
                ||||||||||||| ||| |||||||||||||| | |||||||||||||||||||||||| 
Sbjct: 22057306 tggggtggtggaaaagacgataaatattttgcaaggcttgggaagaatgttatatctgtc 22057247

                                                 
Query: 223      tatgaaactgagacattctcacttcttgataag 255
                ||||| ||||| |||||||| ||||||||||||
Sbjct: 22057246 tatgagactgaaacattctcccttcttgataag 22057214



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 98/114 (85%)
 Strand = Plus / Minus

                                                                            
Query: 360      ggtgagccttgtgcgaattcctggcaaactggtgatgcggcagaaaattctttccaatgc 419
                |||||||||||||| |||||||||||||  || | ||||||||||||  |||| || || 
Sbjct: 22057022 ggtgagccttgtgcaaattcctggcaaagaggagctgcggcagaaaaaccttttcagtgt 22056963

                                                                      
Query: 420      tagcaattgcaagatgcactggcagcacaatggagaatatcttgctgtccaggt 473
                 ||  ||||||||||| |||||||| ||| ||||||||||||||||||||||||
Sbjct: 22056962 cagtgattgcaagatgtactggcagaacagtggagaatatcttgctgtccaggt 22056909



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                            
Query: 39       ggttgttctccatatctttgatgtaaggagcggtaaaatgatgctggactttaagggaac 98
                |||||||||  ||||||||||||| ||||  || ||| ||||||  |||||||| |||| 
Sbjct: 22057526 ggttgttcttaatatctttgatgtgaggactggcaaagtgatgcgcgactttaaaggaag 22057467

                              
Query: 99       agccgatgaattca 112
                 || ||||||||||
Sbjct: 22057466 tgctgatgaattca 22057453



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 131      gtgtttatggtatttcatggcctatcttcaggtg 164
                |||||| |||| ||||||||||||| ||||||||
Sbjct: 22057434 gtgtttctggtgtttcatggcctattttcaggtg 22057401
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>ref|NM_122646.2| Arabidopsis thaliana TIF3B1 (EUKARYOTIC TRANSLATION INITIATION FACTOR
            3B); nucleic acid binding / translation initiation factor
            AT5G27640 (TIF3B1) transcript variant AT5G27640.1 mRNA,
            complete cds
          Length = 2848

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                  
Query: 148  tggcctatcttcaggtggggtggtggaagagatgataaatattttgctaagctt 201
            |||||| | ||||| |||| |||||||| |||||||||||| ||||| ||||||
Sbjct: 1070 tggcctgttttcagatgggctggtggaaaagatgataaatactttgccaagctt 1123
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>ref|NM_001036877.1| Arabidopsis thaliana TIF3B1 (EUKARYOTIC TRANSLATION INITIATION FACTOR
            3B); nucleic acid binding / translation initiation factor
            AT5G27640 (TIF3B1) transcript variant AT5G27640.2 mRNA,
            complete cds
          Length = 2927

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                  
Query: 148  tggcctatcttcaggtggggtggtggaagagatgataaatattttgctaagctt 201
            |||||| | ||||| |||| |||||||| |||||||||||| ||||| ||||||
Sbjct: 1149 tggcctgttttcagatgggctggtggaaaagatgataaatactttgccaagctt 1202
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>gb|BT011831.1| Arabidopsis thaliana At5g27640 mRNA sequence
          Length = 2217

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                  
Query: 148  tggcctatcttcaggtggggtggtggaagagatgataaatattttgctaagctt 201
            |||||| | ||||| |||| |||||||| |||||||||||| ||||| ||||||
Sbjct: 1024 tggcctgttttcagatgggctggtggaaaagatgataaatactttgccaagctt 1077
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>gb|AY102149.1| Arabidopsis thaliana AT5g27640/F15A18_100 mRNA, complete cds
          Length = 2139

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                  
Query: 148  tggcctatcttcaggtggggtggtggaagagatgataaatattttgctaagctt 201
            |||||| | ||||| |||| |||||||| |||||||||||| ||||| ||||||
Sbjct: 949  tggcctgttttcagatgggctggtggaaaagatgataaatactttgccaagctt 1002
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>gb|AF378883.1|AF378883 Arabidopsis thaliana AT5g27640/F15A18_100 mRNA, complete cds
          Length = 2364

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                  
Query: 148  tggcctatcttcaggtggggtggtggaagagatgataaatattttgctaagctt 201
            |||||| | ||||| |||| |||||||| |||||||||||| ||||| ||||||
Sbjct: 1070 tggcctgttttcagatgggctggtggaaaagatgataaatactttgccaagctt 1123
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>gb|AF285834.1|AF285834 Arabidopsis thaliana eukaryotic initiation factor 3B1 subunit
            (TIF3B1) mRNA, complete cds
          Length = 2298

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                  
Query: 148  tggcctatcttcaggtggggtggtggaagagatgataaatattttgctaagctt 201
            |||||| | ||||| |||| |||||||| |||||||||||| ||||| ||||||
Sbjct: 949  tggcctgttttcagatgggctggtggaaaagatgataaatactttgccaagctt 1002
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>gb|AC137830.6| Medicago truncatula clone mth2-33g10, complete sequence
          Length = 113855

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                       
Query: 427    tgcaagatgcactggcagcacaatggagaatatcttgctgt 467
              ||||||||| ||||||||  |||||||||||| ||||||||
Sbjct: 105700 tgcaagatgtactggcagagcaatggagaataccttgctgt 105660
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>gb|AC069556.4|AC069556 Genomic Sequence For Arabidopsis thaliana Clone T1G16 From Chromosome
            V, complete sequence
          Length = 93672

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 163  tggggtggtggaagagatgataaatattttgctaagctt 201
            |||| |||||||| |||||||||||| ||||| ||||||
Sbjct: 2912 tgggctggtggaaaagatgataaatactttgccaagctt 2874
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>gb|AC007478.1|AC007478 Arabidopsis thaliana BAC F15A18 from chromosome V near 68.5 cM,
             complete sequence
          Length = 107931

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 163   tggggtggtggaagagatgataaatattttgctaagctt 201
             |||| |||||||| |||||||||||| ||||| ||||||
Sbjct: 91946 tgggctggtggaaaagatgataaatactttgccaagctt 91908
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>gb|AC114984.18| Mus musculus chromosome 18, clone RP23-248F9, complete sequence
          Length = 185563

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 449   atggagaatatcttgctgtcca 470
             ||||||||||||||||||||||
Sbjct: 15519 atggagaatatcttgctgtcca 15540
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>gb|AC132357.3| Mus musculus BAC clone RP24-120G2 from chromosome 18, complete sequence
          Length = 189088

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 449    atggagaatatcttgctgtcca 470
              ||||||||||||||||||||||
Sbjct: 144750 atggagaatatcttgctgtcca 144729
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>gb|AC164154.2| Mus musculus chromosome 18, clone RP23-60G12, complete sequence
          Length = 238662

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 449    atggagaatatcttgctgtcca 470
              ||||||||||||||||||||||
Sbjct: 113192 atggagaatatcttgctgtcca 113171
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>gb|AC164106.3| Mus musculus BAC clone RP23-445D20 from chromosome 18, complete
             sequence
          Length = 195721

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 449   atggagaatatcttgctgtcca 470
             ||||||||||||||||||||||
Sbjct: 49869 atggagaatatcttgctgtcca 49848
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>ref|NM_122479.2| Arabidopsis thaliana EIF3B-2; nucleic acid binding / translation
            initiation factor AT5G25780 (EIF3B-2) mRNA, complete cds
          Length = 2405

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                 
Query: 148  tggcctatcttcaggtggggtggtggaagagatgataaatattttgctaagct 200
            |||||| | ||||| |||| ||| |||| |||||||||||| ||||| |||||
Sbjct: 1059 tggcctgttttcagatgggctggcggaaaagatgataaatactttgccaagct 1111
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>gb|AC135288.1| Solanum demissum chromosome 5 BAC PGEC219 genomic sequence, complete
             sequence
          Length = 124895

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 175   agagatgataaatattttgctaagc 199
             |||||| ||||||||||||||||||
Sbjct: 39552 agagattataaatattttgctaagc 39576
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>emb|AL159159.21| Human DNA sequence from clone RP11-88J11 on chromosome 13 Contains the
             3' end of the CDK8 gene for cyclin-dependent kinase 8,
             complete sequence
          Length = 144626

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 336   gggtggtgggaagcagcctgccagg 360
             ||||| |||||||||||||||||||
Sbjct: 98155 gggtgatgggaagcagcctgccagg 98179
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>emb|AL033127.1|SPCC622 S.pombe chromosome III cosmid c622
          Length = 40901

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 179   atgataaatattttgctaagcttgg 203
             |||||||||||||||| ||||||||
Sbjct: 26797 atgataaatattttgcaaagcttgg 26821
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>emb|AL844142.5| Mouse DNA sequence from clone RP23-355C24 on chromosome 4, complete
             sequence
          Length = 121550

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 120   ttcaagtgttggtgtttatgg 140
             |||||||||||||||||||||
Sbjct: 91715 ttcaagtgttggtgtttatgg 91735
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>emb|BX470199.6| Zebrafish DNA sequence from clone CH211-226M7 in linkage group 11,
              complete sequence
          Length = 197146

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 155    tcttcaggtggggtggtggaa 175
              |||||||||||||||||||||
Sbjct: 125127 tcttcaggtggggtggtggaa 125147
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>ref|NM_001023176.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPCC622.14),
           partial mRNA
          Length = 930

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 179 atgataaatattttgctaagcttgg 203
           |||||||||||||||| ||||||||
Sbjct: 452 atgataaatattttgcaaagcttgg 476
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>gb|BT002393.1| Arabidopsis thaliana eukaryotic translation initiation factor - like
            protein (At5g25780) mRNA, complete cds
          Length = 2405

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                 
Query: 148  tggcctatcttcaggtggggtggtggaagagatgataaatattttgctaagct 200
            |||||| | ||||| |||| ||| |||| |||||||||||| ||||| |||||
Sbjct: 1059 tggcctgttttcagatgggctggcggaaaagatgataaatactttgccaagct 1111
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>emb|AJ306825.1|PTR306825 Populus tremula x Populus tremuloides mRNA for aux/IAA protein (IAA2
            gene)
          Length = 1763

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 157  ttcaggtggggtggtggaagagatgataa 185
            |||||||||||||||| ||| ||||||||
Sbjct: 1372 ttcaggtggggtggtgcaagggatgataa 1400
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>emb|BX005467.6| Mouse DNA sequence from clone RP23-74L11 on chromosome X, complete
              sequence
          Length = 233590

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 227    aaactgagacattctcacttc 247
              |||||||||||||||||||||
Sbjct: 199746 aaactgagacattctcacttc 199766
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>gb|AC016019.4| Drosophila melanogaster clone BACR08P05, complete sequence
          Length = 192157

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 398   ggcagaaaattctttccaat 417
             ||||||||||||||||||||
Sbjct: 32276 ggcagaaaattctttccaat 32257
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>gb|AY359920.1| Strombomonas borysteniensis strain S10 large subunit ribosomal RNA
           gene, partial sequence
          Length = 1434

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 338 gtggtgggaagcagcctgccaggg 361
           ||||||| ||||||||||||||||
Sbjct: 714 gtggtggcaagcagcctgccaggg 737
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>gb|AC101983.16| Mus musculus chromosome 6, clone RP24-352A8, complete sequence
          Length = 153860

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   tcttcaggtggggtggtgga 174
             ||||||||||||||||||||
Sbjct: 37866 tcttcaggtggggtggtgga 37885
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>gb|AC140783.4| Mus musculus BAC clone RP24-253K16 from chromosome 15, complete
             sequence
          Length = 165903

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   cagaaaattctttccaatgc 419
             ||||||||||||||||||||
Sbjct: 42563 cagaaaattctttccaatgc 42544
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>gb|AC099711.5| Mus musculus chromosome 15, clone RP23-397C11, complete sequence
          Length = 207144

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 400   cagaaaattctttccaatgc 419
             ||||||||||||||||||||
Sbjct: 38620 cagaaaattctttccaatgc 38639
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>gb|AC137905.8| Mus musculus chromosome 15, clone RP23-334B11, complete sequence
          Length = 210548

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  cagaaaattctttccaatgc 419
            ||||||||||||||||||||
Sbjct: 5020 cagaaaattctttccaatgc 5001
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>gb|AC105066.12| Mus musculus chromosome 8, clone RP23-158A22, complete sequence
          Length = 238527

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    tctgtgtatgaaactgagac 236
              ||||||||||||||||||||
Sbjct: 174017 tctgtgtatgaaactgagac 173998
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>emb|Z99292.1|SPAC17A2 S.pombe chromosome I cosmid c17A2
          Length = 36642

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 178  gatgataaatattttgctaa 197
            ||||||||||||||||||||
Sbjct: 4843 gatgataaatattttgctaa 4824
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>ref|XM_805258.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053509719.56) partial mRNA
          Length = 2175

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 335 tgggtggtgggaagcagcctgccagggt 362
           ||||||||||||||| |||||| |||||
Sbjct: 368 tgggtggtgggaagcggcctgcaagggt 395
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>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome
          Length = 1522076

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 173     gaagagatgataaatatttt 192
               ||||||||||||||||||||
Sbjct: 1236362 gaagagatgataaatatttt 1236343
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>gb|BC062389.1| Rattus norvegicus similar to RIKEN cDNA 5830404H04, mRNA (cDNA clone
            MGC:72630 IMAGE:5620907), complete cds
          Length = 3814

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 155  tcttcaggtggggtggtggaagag 178
            ||||||||||||||||||| ||||
Sbjct: 1919 tcttcaggtggggtggtggcagag 1896
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>gb|AE003791.5| Drosophila melanogaster chromosome 2R, section 59 of 73 of the complete
              sequence
          Length = 263535

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 398    ggcagaaaattctttccaat 417
              ||||||||||||||||||||
Sbjct: 231260 ggcagaaaattctttccaat 231279
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>gb|AC005405.1|AC005405 BAC F18A17 from chromosome V containing TINY at 60.5 cM, complete
            sequence
          Length = 94362

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 157  ttcaggtggggtggtggaagagatgataaatattttgctaagct 200
            ||||| |||| ||| |||| |||||||||||| ||||| |||||
Sbjct: 7804 ttcagatgggctggcggaaaagatgataaatactttgccaagct 7761
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>ref|NM_199391.1| Rattus norvegicus similar to RIKEN cDNA 5830404H04 (RGD735112), mRNA
          Length = 3814

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 155  tcttcaggtggggtggtggaagag 178
            ||||||||||||||||||| ||||
Sbjct: 1919 tcttcaggtggggtggtggcagag 1896
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>gb|AC151909.5| Mus musculus BAC clone RP23-60H14 from chromosome 8, complete sequence
          Length = 208855

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 217    tctgtgtatgaaactgagac 236
              ||||||||||||||||||||
Sbjct: 177248 tctgtgtatgaaactgagac 177267


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,945,118
Number of Sequences: 3902068
Number of extensions: 4945118
Number of successful extensions: 93923
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93779
Number of HSP's gapped (non-prelim): 138
length of query: 489
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 467
effective length of database: 17,147,199,772
effective search space: 8007742293524
effective search space used: 8007742293524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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