Clone Name | basd2f01 |
---|---|
Clone Library Name | barley_pub |
>gb|AC183989.2| Pan troglodytes BAC clone CH251-207E6 from chromosome 2, complete sequence Length = 163596 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 gtctgtccatctgcctctgtc 61 ||||||||||||||||||||| Sbjct: 55990 gtctgtccatctgcctctgtc 55970
>gb|AC113483.7| Mus musculus chromosome 1, clone RP23-343E12, complete sequence Length = 207188 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 tctgtccatctgcctctgtct 62 ||||||||||||||||||||| Sbjct: 25723 tctgtccatctgcctctgtct 25703
>gb|AC156549.8| Mus musculus chromosome 1, clone RP24-104O22, complete sequence Length = 164489 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 tctgtccatctgcctctgtct 62 ||||||||||||||||||||| Sbjct: 26961 tctgtccatctgcctctgtct 26981
>gb|AC139887.3| Homo sapiens BAC clone RP11-440L14 from 4, complete sequence Length = 186774 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 aagaggtctccctgcccagtg 105 ||||||||||||||||||||| Sbjct: 174261 aagaggtctccctgcccagtg 174241
>gb|AC064869.6| Homo sapiens BAC clone RP11-534J18 from 2, complete sequence Length = 169514 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 gtctgtccatctgcctctgtc 61 ||||||||||||||||||||| Sbjct: 141891 gtctgtccatctgcctctgtc 141871
>dbj|BS000236.1| Pan troglodytes chromosome 22 clone:PTB-058L13, map 22, complete sequences Length = 160456 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Plus Query: 41 gtctgtccatctgcctctgtctacc 65 |||||||||| |||||||||||||| Sbjct: 69612 gtctgtccatttgcctctgtctacc 69636
>dbj|BS000234.1| Pan troglodytes chromosome 22 clone:PTB-190I13, map 22, complete sequences Length = 174520 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Plus Query: 41 gtctgtccatctgcctctgtctacc 65 |||||||||| |||||||||||||| Sbjct: 161327 gtctgtccatttgcctctgtctacc 161351
>dbj|AP001751.1| Homo sapiens genomic DNA, chromosome 21q, section 95/105 Length = 340000 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Plus Query: 41 gtctgtccatctgcctctgtctacc 65 |||| |||||||||||||||||||| Sbjct: 133877 gtctctccatctgcctctgtctacc 133901
>dbj|AP001046.1| Homo sapiens genomic DNA, chromosome 21, clone:KB43F12, MX1-D21S171 region, complete sequence Length = 158063 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Plus Query: 41 gtctgtccatctgcctctgtctacc 65 |||| |||||||||||||||||||| Sbjct: 133877 gtctctccatctgcctctgtctacc 133901
>ref|XM_473397.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 384 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 tccatcttcctcagccagcg 249 |||||||||||||||||||| Sbjct: 149 tccatcttcctcagccagcg 130
>gb|AC115858.14| Mus musculus chromosome 7, clone RP24-285C16, complete sequence Length = 175843 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 ctcttccatcttcctcagcc 245 |||||||||||||||||||| Sbjct: 142917 ctcttccatcttcctcagcc 142898
>gb|AC009159.12| Homo sapiens chromosome 16 clone RP11-70D24, complete sequence Length = 165921 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gtctccctgcccagtgatcc 109 |||||||||||||||||||| Sbjct: 89704 gtctccctgcccagtgatcc 89723
>gb|AC127234.3| Mus musculus BAC clone RP24-566K14 from chromosome 18, complete sequence Length = 181515 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 gtctgtccatctgcctctgt 60 |||||||||||||||||||| Sbjct: 131337 gtctgtccatctgcctctgt 131318
>gb|AC122798.3| Mus musculus BAC clone RP23-301A3 from 2, complete sequence Length = 206324 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 atggaacagcagcctgaaga 88 |||||||||||||||||||| Sbjct: 157492 atggaacagcagcctgaaga 157511
>emb|AL607006.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence Length = 141787 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 tccatcttcctcagccagcg 249 |||||||||||||||||||| Sbjct: 52754 tccatcttcctcagccagcg 52773
>emb|AL031120.1|HS459L4 Human DNA sequence from clone RP3-459L4 on chromosome 6p22.3-24.1 Contains part of the SCA1 gene for spinocerebellar ataxia 1 (olivopontocerebellar ataxia 1, autosomal dominant, ataxin 1), complete sequence Length = 165363 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 tctgtccatctgcctctgtc 61 |||||||||||||||||||| Sbjct: 34964 tctgtccatctgcctctgtc 34983
>gb|AC005185.1| Homo sapiens Xp22 BAC GSHB-383H3 (Genome Systems Human BAC Library) complete sequence Length = 124351 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 acacatgcaaagtcagataa 130 |||||||||||||||||||| Sbjct: 57249 acacatgcaaagtcagataa 57268
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 tccatcttcctcagccagcg 249 |||||||||||||||||||| Sbjct: 27316826 tccatcttcctcagccagcg 27316845
>emb|BX005248.13| Zebrafish DNA sequence from clone CH211-155H12 in linkage group 8, complete sequence Length = 185135 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gaatggaacagcagcctgaa 86 |||||||||||||||||||| Sbjct: 54702 gaatggaacagcagcctgaa 54721
>gb|AC148007.3| Mus musculus BAC clone RP23-273G4 from 1, complete sequence Length = 184937 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 gtctgtccatctgcctctgt 60 |||||||||||||||||||| Sbjct: 132705 gtctgtccatctgcctctgt 132686
>emb|AL844577.3| Mouse DNA sequence from clone RP23-129P1 on chromosome 2, complete sequence Length = 204516 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 atggaacagcagcctgaaga 88 |||||||||||||||||||| Sbjct: 124772 atggaacagcagcctgaaga 124753 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,622,248 Number of Sequences: 3902068 Number of extensions: 2622248 Number of successful extensions: 50866 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50823 Number of HSP's gapped (non-prelim): 43 length of query: 286 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 264 effective length of database: 17,147,199,772 effective search space: 4526860739808 effective search space used: 4526860739808 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)