Clone Name | basd2e21 |
---|---|
Clone Library Name | barley_pub |
>DFD_DROME (P07548) Homeotic protein deformed| Length = 586 Score = 34.7 bits (78), Expect = 0.30 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Frame = -2 Query: 475 HSVFPIDLFRHPQQYHHTPHRQ*HGHQQFQPGR--TLATGMHHQLIQRGPSSCY 320 HS+ P D+ +HH PH H H P A HHQ G SS Y Sbjct: 78 HSMHPADMVSDYMAHHHNPHSHSHSHTHSLPHHHSNSAISGHHQASAGGYSSNY 131
>CBF1_KLULA (P49379) Centromere-binding protein 1 (CBP-1) (Centromere-binding| factor 1) (Centromere promoter factor 1) Length = 359 Score = 31.6 bits (70), Expect = 2.5 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%) Frame = +1 Query: 235 EKKKAVRRGKKQTVETTAD--DTEGTSKAADSKRTGPSESADGASQLQEFSQAETVDAHA 408 ++ +A RR K+ +E T + D+E +K +S + + ADG+ ++ SQ D Sbjct: 159 DEDQAQRRRGKKNIEGTGESNDSERATKIGESGSSNETAGADGSGDREDGSQP---DGTE 215 Query: 409 TAGEEYGDIVVDGETNRLGKRYG 477 EE G G R G++ G Sbjct: 216 HDDEENGGAGAGGAAPRRGRKPG 238
>DBP3_NEUCR (Q7S5R1) ATP-dependent RNA helicase dbp-3 (EC 3.6.1.-)| Length = 614 Score = 31.2 bits (69), Expect = 3.3 Identities = 17/57 (29%), Positives = 31/57 (54%) Frame = +1 Query: 232 REKKKAVRRGKKQTVETTADDTEGTSKAADSKRTGPSESADGASQLQEFSQAETVDA 402 +EKK + K++ E+T +++ SKA + T P+ S +GA + QA+ + A Sbjct: 98 KEKKDKKEKKAKKSDESTTEESTSASKATTNGTTTPAASTNGA---YTYKQADALSA 151
>SMC2_XENLA (P50533) Structural maintenance of chromosome 2| (Chromosome-associated protein E) (Chromosome assembly protein XCAP-E) Length = 1203 Score = 31.2 bits (69), Expect = 3.3 Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 1/128 (0%) Frame = +1 Query: 127 RKRRQPSGPLMQTTGEKRYNLRRXXXXXXXXXXPPREKKKAVRRGK-KQTVETTADDTEG 303 + R Q G +++ E +R ++ KA R K K+ V++ +D Sbjct: 286 KMRDQEVGGALRSLEEALSEAQRADTKVQSALDLKKQNMKAEREKKRKELVKSMEED--- 342 Query: 304 TSKAADSKRTGPSESADGASQLQEFSQAETVDAHATAGEEYGDIVVDGETNRLGKRYGLS 483 +K +K + DG S LQE SQ + V+A +A + + + +N G+ L+ Sbjct: 343 -AKVLTAKEKEVKKITDGLSSLQEASQKD-VEAFTSAQQHFNAVSAGLSSNEDGEEATLA 400 Query: 484 SRHNKRKN 507 + KN Sbjct: 401 GQMMACKN 408
>RNE_ECOLI (P21513) Ribonuclease E (EC 3.1.4.-) (RNase E)| Length = 1061 Score = 30.8 bits (68), Expect = 4.3 Identities = 22/103 (21%), Positives = 42/103 (40%) Frame = +1 Query: 115 GGQPRKRRQPSGPLMQTTGEKRYNLRRXXXXXXXXXXPPREKKKAVRRGKKQTVETTADD 294 GG+ K + P + E++ + R+ PR+ RR + + +T ++ Sbjct: 584 GGEETKPTEQPAPKAEAKPERQQDRRK-----------PRQNN---RRDRNERRDTRSER 629 Query: 295 TEGTSKAADSKRTGPSESADGASQLQEFSQAETVDAHATAGEE 423 TEG+ +++R A + QAE + TA E+ Sbjct: 630 TEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQ 672
>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)| Length = 1206 Score = 30.8 bits (68), Expect = 4.3 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -2 Query: 445 HPQQYHHTPHRQ*HGHQQFQPGRTLATGMHHQLIQRGPSS 326 H +HH H Q H HQQ Q +T + H L G S+ Sbjct: 306 HHHHHHHHHHHQHHNHQQQQQQQTSLSQGHASLTVAGGSA 345
>DRI_DROME (Q24573) Protein dead ringer (Protein retained)| Length = 911 Score = 30.8 bits (68), Expect = 4.3 Identities = 20/87 (22%), Positives = 36/87 (41%) Frame = -2 Query: 598 HHHQTHQPRFPRIVNSKQETLETTLIRCNYYSSSCYVVKKDHSVFPIDLFRHPQQYHHTP 419 HH P F ++ N ++ +E+ ++ + KK+ + P+ HP Q H+ Sbjct: 463 HHRLMGAPAFGQMPNLVKQEIESRMMEYLQLIQA----KKEQGMPPVLGGNHPHQQQHSQ 518 Query: 418 HRQ*HGHQQFQPGRTLATGMHHQLIQR 338 +Q H Q + + HH QR Sbjct: 519 QQQQQQHHHQQQQQQQSQQQHHLQQQR 545
>FIBP_ADE07 (P15141) Fiber protein (pIV)| Length = 343 Score = 30.8 bits (68), Expect = 4.3 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -2 Query: 571 FPRIVNSKQETLETTLIRCNYYSSSCYVVKKDHSVFPIDL 452 +P VNS+++ NY +CY DH+ FPID+ Sbjct: 260 YPFNVNSREKE--------NYIYGTCYYTASDHTAFPIDI 291
>ARP8_SCHPO (Q9US07) Probable actin-related protein 8| Length = 620 Score = 30.4 bits (67), Expect = 5.6 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = +1 Query: 259 GKKQTVETTADDTEGTSKAADSKRTGPSESADG--ASQLQEFSQAETVDAH 405 G+K ET ++ G +K DSK++ E DG S+L E +T+ H Sbjct: 9 GEKDAKETESESANGDTKQDDSKKSQVEEEEDGIEESELGEEKDNKTIVLH 59
>MEOX2_HUMAN (P50222) Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth| arrest-specific homeobox) Length = 304 Score = 29.6 bits (65), Expect = 9.6 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Frame = -2 Query: 505 SSSCYVV--KKDHSVFPIDLFRHPQQYHHTPHRQ*HGHQQFQPGRTLATGMHHQLIQRGP 332 SSSC + + +F +H + +HH H H H Q Q + L T H + P Sbjct: 45 SSSCIIAGYPNEEGMFAS---QHHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPP 101 Query: 331 SSCYQQL 311 S+ L Sbjct: 102 SAARHSL 108 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,647,007 Number of Sequences: 219361 Number of extensions: 1561093 Number of successful extensions: 4776 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4400 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4734 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7252940416 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)