>DFD_DROME (P07548) Homeotic protein deformed|
          Length = 586

 Score = 34.7 bits (78), Expect = 0.30
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = -2

Query: 475 HSVFPIDLFRHPQQYHHTPHRQ*HGHQQFQPGR--TLATGMHHQLIQRGPSSCY 320
           HS+ P D+      +HH PH   H H    P      A   HHQ    G SS Y
Sbjct: 78  HSMHPADMVSDYMAHHHNPHSHSHSHTHSLPHHHSNSAISGHHQASAGGYSSNY 131

>CBF1_KLULA (P49379) Centromere-binding protein 1 (CBP-1) (Centromere-binding|
           factor 1) (Centromere promoter factor 1)
          Length = 359

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = +1

Query: 235 EKKKAVRRGKKQTVETTAD--DTEGTSKAADSKRTGPSESADGASQLQEFSQAETVDAHA 408
           ++ +A RR  K+ +E T +  D+E  +K  +S  +  +  ADG+   ++ SQ    D   
Sbjct: 159 DEDQAQRRRGKKNIEGTGESNDSERATKIGESGSSNETAGADGSGDREDGSQP---DGTE 215

Query: 409 TAGEEYGDIVVDGETNRLGKRYG 477
              EE G     G   R G++ G
Sbjct: 216 HDDEENGGAGAGGAAPRRGRKPG 238

>DBP3_NEUCR (Q7S5R1) ATP-dependent RNA helicase dbp-3 (EC 3.6.1.-)|
          Length = 614

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = +1

Query: 232 REKKKAVRRGKKQTVETTADDTEGTSKAADSKRTGPSESADGASQLQEFSQAETVDA 402
           +EKK    +  K++ E+T +++   SKA  +  T P+ S +GA     + QA+ + A
Sbjct: 98  KEKKDKKEKKAKKSDESTTEESTSASKATTNGTTTPAASTNGA---YTYKQADALSA 151

>SMC2_XENLA (P50533) Structural maintenance of chromosome 2|
           (Chromosome-associated protein E) (Chromosome assembly
           protein XCAP-E)
          Length = 1203

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 1/128 (0%)
 Frame = +1

Query: 127 RKRRQPSGPLMQTTGEKRYNLRRXXXXXXXXXXPPREKKKAVRRGK-KQTVETTADDTEG 303
           + R Q  G  +++  E     +R            ++  KA R  K K+ V++  +D   
Sbjct: 286 KMRDQEVGGALRSLEEALSEAQRADTKVQSALDLKKQNMKAEREKKRKELVKSMEED--- 342

Query: 304 TSKAADSKRTGPSESADGASQLQEFSQAETVDAHATAGEEYGDIVVDGETNRLGKRYGLS 483
            +K   +K     +  DG S LQE SQ + V+A  +A + +  +     +N  G+   L+
Sbjct: 343 -AKVLTAKEKEVKKITDGLSSLQEASQKD-VEAFTSAQQHFNAVSAGLSSNEDGEEATLA 400

Query: 484 SRHNKRKN 507
            +    KN
Sbjct: 401 GQMMACKN 408

>RNE_ECOLI (P21513) Ribonuclease E (EC 3.1.4.-) (RNase E)|
          Length = 1061

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 22/103 (21%), Positives = 42/103 (40%)
 Frame = +1

Query: 115 GGQPRKRRQPSGPLMQTTGEKRYNLRRXXXXXXXXXXPPREKKKAVRRGKKQTVETTADD 294
           GG+  K  +   P  +   E++ + R+           PR+     RR + +  +T ++ 
Sbjct: 584 GGEETKPTEQPAPKAEAKPERQQDRRK-----------PRQNN---RRDRNERRDTRSER 629

Query: 295 TEGTSKAADSKRTGPSESADGASQLQEFSQAETVDAHATAGEE 423
           TEG+    +++R         A   +   QAE  +   TA E+
Sbjct: 630 TEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQ 672

>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)|
          Length = 1206

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 445 HPQQYHHTPHRQ*HGHQQFQPGRTLATGMHHQLIQRGPSS 326
           H   +HH  H Q H HQQ Q  +T  +  H  L   G S+
Sbjct: 306 HHHHHHHHHHHQHHNHQQQQQQQTSLSQGHASLTVAGGSA 345

>DRI_DROME (Q24573) Protein dead ringer (Protein retained)|
          Length = 911

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 20/87 (22%), Positives = 36/87 (41%)
 Frame = -2

Query: 598 HHHQTHQPRFPRIVNSKQETLETTLIRCNYYSSSCYVVKKDHSVFPIDLFRHPQQYHHTP 419
           HH     P F ++ N  ++ +E+ ++       +    KK+  + P+    HP Q  H+ 
Sbjct: 463 HHRLMGAPAFGQMPNLVKQEIESRMMEYLQLIQA----KKEQGMPPVLGGNHPHQQQHSQ 518

Query: 418 HRQ*HGHQQFQPGRTLATGMHHQLIQR 338
            +Q   H   Q  +  +   HH   QR
Sbjct: 519 QQQQQQHHHQQQQQQQSQQQHHLQQQR 545

>FIBP_ADE07 (P15141) Fiber protein (pIV)|
          Length = 343

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 571 FPRIVNSKQETLETTLIRCNYYSSSCYVVKKDHSVFPIDL 452
           +P  VNS+++         NY   +CY    DH+ FPID+
Sbjct: 260 YPFNVNSREKE--------NYIYGTCYYTASDHTAFPIDI 291

>ARP8_SCHPO (Q9US07) Probable actin-related protein 8|
          Length = 620

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 259 GKKQTVETTADDTEGTSKAADSKRTGPSESADG--ASQLQEFSQAETVDAH 405
           G+K   ET ++   G +K  DSK++   E  DG   S+L E    +T+  H
Sbjct: 9   GEKDAKETESESANGDTKQDDSKKSQVEEEEDGIEESELGEEKDNKTIVLH 59

>MEOX2_HUMAN (P50222) Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth|
           arrest-specific homeobox)
          Length = 304

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = -2

Query: 505 SSSCYVV--KKDHSVFPIDLFRHPQQYHHTPHRQ*HGHQQFQPGRTLATGMHHQLIQRGP 332
           SSSC +     +  +F     +H + +HH  H   H H Q Q  + L T  H   +   P
Sbjct: 45  SSSCIIAGYPNEEGMFAS---QHHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPP 101

Query: 331 SSCYQQL 311
           S+    L
Sbjct: 102 SAARHSL 108


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,647,007
Number of Sequences: 219361
Number of extensions: 1561093
Number of successful extensions: 4776
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4734
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7252940416
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)