Clone Name | basd2e21 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_467417.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3468 Score = 65.9 bits (33), Expect = 2e-07 Identities = 95/111 (85%), Gaps = 6/111 (5%) Strand = Plus / Plus Query: 15 gttactgttggtggtacacggnaagaggcgctttgctgga-ccagagatcagtgaggaag 73 |||||||| |||||||||||| ||| |||||||||||||| ||| | ||||||||| ||| Sbjct: 2890 gttactgtgggtggtacacgg-aagcggcgctttgctggagccaca-atcagtgagcaag 2947 Query: 74 atgaagaagttagtgaagcacaatctgaaagtgtttcagttggcgggcagc 124 |||| || |||||||| || ||||||||||||||| |||| ||||||| Sbjct: 2948 atgaggac---agtgaagctcattctgaaagtgtttcacttggagggcagc 2995 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 445 ggcgaaacaaatcgattgggaaaacgctatggtctttcttcacgacat 492 |||| ||| |||| |||||||||| |||||||||||||||||| |||| Sbjct: 3419 ggcggaaccaatcaattgggaaaaagctatggtctttcttcactacat 3466 Score = 44.1 bits (22), Expect = 0.63 Identities = 40/46 (86%) Strand = Plus / Plus Query: 167 caggtgaaaaacgctacaatttgagacgcactacagttgcaaatgc 212 |||| |||||||||||||| | || ||||| |||||||||||||| Sbjct: 3038 caggagaaaaacgctacaacctcaggcgcaccacagttgcaaatgc 3083 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 268 cagacggtagaaactaccgctgatgacacggaaggaacctc 308 ||||| ||||| ||||||| |||||||| ||||||||||| Sbjct: 3136 cagacagtagaggctaccgcagatgacacagaaggaacctc 3176
>dbj|AB110204.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, complete cds, contig of clone: OsNMCP1aSE2Nco-5 and 12FPG031 Length = 3708 Score = 65.9 bits (33), Expect = 2e-07 Identities = 95/111 (85%), Gaps = 6/111 (5%) Strand = Plus / Plus Query: 15 gttactgttggtggtacacggnaagaggcgctttgctgga-ccagagatcagtgaggaag 73 |||||||| |||||||||||| ||| |||||||||||||| ||| | ||||||||| ||| Sbjct: 2890 gttactgtgggtggtacacgg-aagcggcgctttgctggagccaca-atcagtgagcaag 2947 Query: 74 atgaagaagttagtgaagcacaatctgaaagtgtttcagttggcgggcagc 124 |||| || |||||||| || ||||||||||||||| |||| ||||||| Sbjct: 2948 atgaggac---agtgaagctcattctgaaagtgtttcacttggagggcagc 2995 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 445 ggcgaaacaaatcgattgggaaaacgctatggtctttcttcacgacataacaa 497 |||| ||| |||| |||||||||| |||||||||||||||||| |||| |||| Sbjct: 3419 ggcggaaccaatcaattgggaaaaagctatggtctttcttcactacatgacaa 3471 Score = 44.1 bits (22), Expect = 0.63 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Plus Query: 561 attcttggaaatctaggttggtgtgtttggtgatgatg 598 |||||||||| ||||||||| |||| |||||||||||| Sbjct: 3532 attcttggaactctaggttg-tgtgcttggtgatgatg 3568 Score = 44.1 bits (22), Expect = 0.63 Identities = 40/46 (86%) Strand = Plus / Plus Query: 167 caggtgaaaaacgctacaatttgagacgcactacagttgcaaatgc 212 |||| |||||||||||||| | || ||||| |||||||||||||| Sbjct: 3038 caggagaaaaacgctacaacctcaggcgcaccacagttgcaaatgc 3083 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 268 cagacggtagaaactaccgctgatgacacggaaggaacctc 308 ||||| ||||| ||||||| |||||||| ||||||||||| Sbjct: 3136 cagacagtagaggctaccgcagatgacacagaaggaacctc 3176
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 65.9 bits (33), Expect = 2e-07 Identities = 95/111 (85%), Gaps = 6/111 (5%) Strand = Plus / Minus Query: 15 gttactgttggtggtacacggnaagaggcgctttgctgga-ccagagatcagtgaggaag 73 |||||||| |||||||||||| ||| |||||||||||||| ||| | ||||||||| ||| Sbjct: 29402050 gttactgtgggtggtacacgg-aagcggcgctttgctggagccaca-atcagtgagcaag 29401993 Query: 74 atgaagaagttagtgaagcacaatctgaaagtgtttcagttggcgggcagc 124 |||| || |||||||| || ||||||||||||||| |||| ||||||| Sbjct: 29401992 atgaggac---agtgaagctcattctgaaagtgtttcacttggagggcagc 29401945 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 445 ggcgaaacaaatcgattgggaaaacgctatggtctttcttcacgacataacaa 497 |||| ||| |||| |||||||||| |||||||||||||||||| |||| |||| Sbjct: 29401244 ggcggaaccaatcaattgggaaaaagctatggtctttcttcactacatgacaa 29401192 Score = 44.1 bits (22), Expect = 0.63 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Minus Query: 561 attcttggaaatctaggttggtgtgtttggtgatgatg 598 |||||||||| ||||||||| |||| |||||||||||| Sbjct: 29401131 attcttggaactctaggttg-tgtgcttggtgatgatg 29401095 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 268 cagacggtagaaactaccgctgatgacacggaaggaacctc 308 ||||| ||||| ||||||| |||||||| ||||||||||| Sbjct: 29401694 cagacagtagaggctaccgcagatgacacagaaggaacctc 29401654
>dbj|AP004161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1311_H06 Length = 139868 Score = 65.9 bits (33), Expect = 2e-07 Identities = 95/111 (85%), Gaps = 6/111 (5%) Strand = Plus / Minus Query: 15 gttactgttggtggtacacggnaagaggcgctttgctgga-ccagagatcagtgaggaag 73 |||||||| |||||||||||| ||| |||||||||||||| ||| | ||||||||| ||| Sbjct: 52922 gttactgtgggtggtacacgg-aagcggcgctttgctggagccaca-atcagtgagcaag 52865 Query: 74 atgaagaagttagtgaagcacaatctgaaagtgtttcagttggcgggcagc 124 |||| || |||||||| || ||||||||||||||| |||| ||||||| Sbjct: 52864 atgaggac---agtgaagctcattctgaaagtgtttcacttggagggcagc 52817 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 445 ggcgaaacaaatcgattgggaaaacgctatggtctttcttcacgacataacaa 497 |||| ||| |||| |||||||||| |||||||||||||||||| |||| |||| Sbjct: 52116 ggcggaaccaatcaattgggaaaaagctatggtctttcttcactacatgacaa 52064 Score = 44.1 bits (22), Expect = 0.63 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Minus Query: 561 attcttggaaatctaggttggtgtgtttggtgatgatg 598 |||||||||| ||||||||| |||| |||||||||||| Sbjct: 52003 attcttggaactctaggttg-tgtgcttggtgatgatg 51967 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 268 cagacggtagaaactaccgctgatgacacggaaggaacctc 308 ||||| ||||| ||||||| |||||||| ||||||||||| Sbjct: 52566 cagacagtagaggctaccgcagatgacacagaaggaacctc 52526
>gb|AY107338.1| Zea mays PCO113049 mRNA sequence Length = 866 Score = 56.0 bits (28), Expect = 2e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 357 tgcatcccagttgcaagagttctcccaggctgaaactgttgatgcccatgct 408 ||||||||||||||| ||||| ||||||| |||| || ||||||||||||| Sbjct: 284 tgcatcccagttgcatgagttttcccaggttgaagttggtgatgcccatgct 335 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 100 gaaagtgtttcagttggcgggcagcctcgtaagaggaggca 140 |||||||||||| |||| ||||||| ||||||||| |||| Sbjct: 15 gaaagtgtttcacttggagggcagcgccgtaagaggcggca 55
>gb|AY286123.1| Cyanidioschyzon merolae DBV201 chloroplast, complete genome Length = 149705 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Plus Query: 440 tggatggcgaaacaaatcgattggga 465 ||||||||||||||||| |||||||| Sbjct: 53864 tggatggcgaaacaaattgattggga 53889
>gb|AE010141.1| Pyrococcus furiosus DSM 3638, section 16 of 173 of the complete genome Length = 12352 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Plus Query: 63 cagtgaggaagatgaagaagtt 84 |||||||||||||||||||||| Sbjct: 1866 cagtgaggaagatgaagaagtt 1887
>emb|CT967308.1| Human DNA sequence from clone XXyac-830B11 on chromosome 6, complete sequence Length = 31833 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Minus Query: 248 ctgtgaggagaggaaaaaagca 269 |||||||||||||||||||||| Sbjct: 5110 ctgtgaggagaggaaaaaagca 5089
>dbj|AB002583.1| Cyanidioschyzon merolae chloroplast DNA, complete genome, strain:10D Length = 149987 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Minus Query: 440 tggatggcgaaacaaatcgattggga 465 ||||||||||||||||| |||||||| Sbjct: 11515 tggatggcgaaacaaattgattggga 11490
>ref|XM_528429.1| PREDICTED: Pan troglodytes similar to G protein-coupled receptor 144; G-protein coupled receptor GPR144 (LOC473059), mRNA Length = 3456 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 ccacagcagcagcccctccac 232 ||||||||||||||||||||| Sbjct: 2877 ccacagcagcagcccctccac 2857
>ref|NM_195277.1| Oryza sativa (japonica cultivar-group) putative gag-pol polyprotein (OSJNBb0038H12.4), mRNA Length = 2283 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 cagttgcaaatgccacagcag 220 ||||||||||||||||||||| Sbjct: 2243 cagttgcaaatgccacagcag 2263
>gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0038H12 map E60284SA, complete sequence Length = 139190 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 cagttgcaaatgccacagcag 220 ||||||||||||||||||||| Sbjct: 14896 cagttgcaaatgccacagcag 14916
>ref|XM_595269.2| PREDICTED: Bos taurus similar to G protein-coupled receptor 144 (LOC517106), mRNA Length = 1776 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 ccacagcagcagcccctccac 232 ||||||||||||||||||||| Sbjct: 951 ccacagcagcagcccctccac 931
>gb|AC124578.4| Mus musculus BAC clone RP23-166C2 from 18, complete sequence Length = 213229 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 209 atgccacagcagcagcccctc 229 ||||||||||||||||||||| Sbjct: 37208 atgccacagcagcagcccctc 37188
>ref|XM_761577.1| Theileria parva strain Muguga chromosome 1 hypothetical protein (TP01_1149) partial mRNA Length = 3339 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 63 cagtgaggaagatgaagaagttagt 87 |||||| |||||||||||||||||| Sbjct: 2211 cagtgaagaagatgaagaagttagt 2235
>gb|AF455756.1| Mus musculus tenascin-N (Tnn) mRNA, complete cds Length = 5773 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 289 gatgacacggaaggaacctctaaag 313 ||||||| ||||||||||||||||| Sbjct: 4955 gatgacatggaaggaacctctaaag 4931
>gb|AY278562.1| Homo sapiens G-protein coupled receptor GPR144 (GPR144) mRNA, complete cds Length = 2892 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 ccacagcagcagcccctccac 232 ||||||||||||||||||||| Sbjct: 2241 ccacagcagcagcccctccac 2221
>gb|AC154873.6| Mus musculus chromosome 1, clone RP23-71J17, complete sequence Length = 256719 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 289 gatgacacggaaggaacctctaaag 313 ||||||| ||||||||||||||||| Sbjct: 80460 gatgacatggaaggaacctctaaag 80484
>dbj|AK048033.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130031C11 product:hypothetical Fibrinogen beta and gamma chains C-terminal globular domain containing protein, full insert sequence Length = 3343 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 289 gatgacacggaaggaacctctaaag 313 ||||||| ||||||||||||||||| Sbjct: 3104 gatgacatggaaggaacctctaaag 3080
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 cagttgcaaatgccacagcag 220 ||||||||||||||||||||| Sbjct: 5908987 cagttgcaaatgccacagcag 5908967
>gb|AY255620.1| Homo sapiens G protein-coupled receptor PGR24 mRNA, partial cds Length = 837 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 ccacagcagcagcccctccac 232 ||||||||||||||||||||| Sbjct: 387 ccacagcagcagcccctccac 367
>gb|AC127684.5| Mus musculus BAC clone RP24-171J12 from chromosome 6, complete sequence Length = 178299 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 502 aagaataataattgcatctga 522 ||||||||||||||||||||| Sbjct: 108094 aagaataataattgcatctga 108114
>ref|NM_182611.1| Homo sapiens G protein-coupled receptor 144 (GPR144), mRNA Length = 2892 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 ccacagcagcagcccctccac 232 ||||||||||||||||||||| Sbjct: 2241 ccacagcagcagcccctccac 2221
>ref|NM_177839.2| Mus musculus tenascin N (Tnn), mRNA Length = 5773 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 289 gatgacacggaaggaacctctaaag 313 ||||||| ||||||||||||||||| Sbjct: 4955 gatgacatggaaggaacctctaaag 4931
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 cagttgcaaatgccacagcag 220 ||||||||||||||||||||| Sbjct: 5910173 cagttgcaaatgccacagcag 5910153
>emb|AL137846.24| Human DNA sequence from clone RP11-101K10 on chromosome 9, complete sequence Length = 162839 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 ccacagcagcagcccctccac 232 ||||||||||||||||||||| Sbjct: 142785 ccacagcagcagcccctccac 142765
>dbj|AB065601.1| Homo sapiens gene for seven transmembrane helix receptor, complete cds, isolate:CBRC7TM_164 Length = 18512 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 ccacagcagcagcccctccac 232 ||||||||||||||||||||| Sbjct: 3582 ccacagcagcagcccctccac 3562
>ref|XM_636459.1| Dictyostelium discoideum RNA binding protein (DDB0218189), partial mRNA Length = 2360 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 578 ttggtgtgtttggtgatgat 597 |||||||||||||||||||| Sbjct: 924 ttggtgtgtttggtgatgat 905
>ref|NM_152818.2| Mus musculus oxysterol binding protein 2 (Osbp2), mRNA Length = 4138 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 agagatcagtgaggaagatgaaga 80 ||||| |||||||||||||||||| Sbjct: 1353 agagaacagtgaggaagatgaaga 1376
>gb|AC158554.6| Mus musculus chromosome 15, clone RP23-353O17, complete sequence Length = 192019 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 cgtaagaggaggcagccatc 146 |||||||||||||||||||| Sbjct: 98166 cgtaagaggaggcagccatc 98185
>ref|NM_001001876.1| Gallus gallus basement membrane-specific heparan sulfate proteoglycan core protein (HSPG), mRNA Length = 12255 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 tgccacagcagcagcccctc 229 |||||||||||||||||||| Sbjct: 11795 tgccacagcagcagcccctc 11776
>gb|BC058602.1| Mus musculus oxysterol binding protein 2, mRNA (cDNA clone MGC:65555 IMAGE:6467653), complete cds Length = 1822 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 agagatcagtgaggaagatgaaga 80 ||||| |||||||||||||||||| Sbjct: 316 agagaacagtgaggaagatgaaga 339
>gb|BC031794.1| Mus musculus oxysterol binding protein 2, mRNA (cDNA clone MGC:25110 IMAGE:4501119), complete cds Length = 3123 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 agagatcagtgaggaagatgaaga 80 ||||| |||||||||||||||||| Sbjct: 316 agagaacagtgaggaagatgaaga 339
>gb|U42894.1|USU42894 Unidentified soil organism R6-45 16S rRNA gene, partial sequence Length = 270 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 cctcgtaagaggaggcagcc 143 |||||||||||||||||||| Sbjct: 204 cctcgtaagaggaggcagcc 223
>ref|XM_618841.3| PREDICTED: Mus musculus oxysterol binding protein 2, transcript variant 2 (Osbp2), mRNA Length = 3646 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 agagatcagtgaggaagatgaaga 80 ||||| |||||||||||||||||| Sbjct: 1347 agagaacagtgaggaagatgaaga 1370
>ref|XM_757515.1| Ustilago maydis 521 hypothetical protein (UM06461.1) partial mRNA Length = 4149 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 gcaaatgccacagcagcagc 224 |||||||||||||||||||| Sbjct: 755 gcaaatgccacagcagcagc 736
>ref|XM_748689.1| Aspergillus fumigatus Af293 Rho guanyl nucleotide exchange factor (Afu5g08550) partial mRNA Length = 3600 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 aggaggcagccatctggccc 152 |||||||||||||||||||| Sbjct: 706 aggaggcagccatctggccc 725
>ref|XM_862851.1| PREDICTED: Canis familiaris similar to Rap guanine nucleotide exchange factor 2 (PDZ domain containing guanine nucleotide exchange factor 1) (PDZ-GEF1) (RA-GEF), transcript variant 5 (LOC482670), mRNA Length = 6850 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 233 gggagaagaagaaagctgtgagga 256 ||||| |||||||||||||||||| Sbjct: 3651 gggaggagaagaaagctgtgagga 3628
>ref|XM_862846.1| PREDICTED: Canis familiaris similar to Rap guanine nucleotide exchange factor 2 (PDZ domain containing guanine nucleotide exchange factor 1) (PDZ-GEF1) (RA-GEF), transcript variant 4 (LOC482670), mRNA Length = 7066 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 233 gggagaagaagaaagctgtgagga 256 ||||| |||||||||||||||||| Sbjct: 3870 gggaggagaagaaagctgtgagga 3847
>ref|XM_862840.1| PREDICTED: Canis familiaris similar to Rap guanine nucleotide exchange factor 2 (PDZ domain containing guanine nucleotide exchange factor 1) (PDZ-GEF1) (RA-GEF), transcript variant 3 (LOC482670), mRNA Length = 7042 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 233 gggagaagaagaaagctgtgagga 256 ||||| |||||||||||||||||| Sbjct: 3846 gggaggagaagaaagctgtgagga 3823
>ref|XM_539787.2| PREDICTED: Canis familiaris similar to Rap guanine nucleotide exchange factor 2 (PDZ domain containing guanine nucleotide exchange factor 1) (PDZ-GEF1) (RA-GEF), transcript variant 1 (LOC482670), mRNA Length = 7048 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 233 gggagaagaagaaagctgtgagga 256 ||||| |||||||||||||||||| Sbjct: 3858 gggaggagaagaaagctgtgagga 3835
>ref|XM_848711.1| PREDICTED: Canis familiaris similar to Rap guanine nucleotide exchange factor 2 (PDZ domain containing guanine nucleotide exchange factor 1) (PDZ-GEF1) (RA-GEF), transcript variant 2 (LOC482670), mRNA Length = 7081 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 233 gggagaagaagaaagctgtgagga 256 ||||| |||||||||||||||||| Sbjct: 3882 gggaggagaagaaagctgtgagga 3859
>gb|AC105075.6| Mus musculus chromosome 1, clone RP23-366P11, complete sequence Length = 195511 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 489 acataacaagaggaagaata 508 |||||||||||||||||||| Sbjct: 147294 acataacaagaggaagaata 147313
>gb|BC058356.1| Mus musculus oxysterol binding protein 2, mRNA (cDNA clone MGC:66677 IMAGE:5696357), complete cds Length = 3281 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 agagatcagtgaggaagatgaaga 80 ||||| |||||||||||||||||| Sbjct: 496 agagaacagtgaggaagatgaaga 519
>gb|AC111092.10| Mus musculus chromosome 12, clone RP23-168O9, complete sequence Length = 211926 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 tgccacagcagcagcccctc 229 |||||||||||||||||||| Sbjct: 56574 tgccacagcagcagcccctc 56555
>gb|AC122722.7| Medicago truncatula clone mth1-3f12, complete sequence Length = 116833 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 gaagatgaagaagttagtga 89 |||||||||||||||||||| Sbjct: 72633 gaagatgaagaagttagtga 72614
>gb|AC159816.2| Mus musculus BAC clone RP23-321A19 from chromosome 9, complete sequence Length = 191274 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 ctgtgaggagaggaaaaaag 267 |||||||||||||||||||| Sbjct: 49082 ctgtgaggagaggaaaaaag 49101
>emb|AL353624.8| Human DNA sequence from clone RP1-243N19 on chromosome 6, complete sequence Length = 23424 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 ggtgaggagtatggtgatat 434 |||||||||||||||||||| Sbjct: 17732 ggtgaggagtatggtgatat 17751
>emb|AL021408.1|HS523C21 Human DNA sequence from clone RP3-523C21 on chromosome 6q23.1-23.3 Contains two novels genes, complete sequence Length = 146831 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 aataataattgcatctgatt 524 |||||||||||||||||||| Sbjct: 60231 aataataattgcatctgatt 60250
>gb|DQ129290.1| Uncultured bacterium clone AKIW700 16S ribosomal RNA gene, partial sequence Length = 1420 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 cctcgtaagaggaggcagcc 143 |||||||||||||||||||| Sbjct: 1387 cctcgtaagaggaggcagcc 1406
>gb|AC162180.2| Mus musculus BAC clone RP23-126K16 from chromosome 9, complete sequence Length = 226160 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 ctgtgaggagaggaaaaaag 267 |||||||||||||||||||| Sbjct: 211055 ctgtgaggagaggaaaaaag 211074
>gb|AC159379.14| Mus musculus 10 BAC RP23-210F14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226172 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 cagtgaggaagatgaagaag 82 |||||||||||||||||||| Sbjct: 90653 cagtgaggaagatgaagaag 90672
>emb|AL731853.9| Mouse DNA sequence from clone RP23-128G5 on chromosome 11 Contains the 5' end of the Osbp2 gene for oxysterol binding protein 2, a novel pseudogene, two novel genes, the Dusp18 gene for dual specificity phosphatase 18 and five CpG islands, complete sequence Length = 205509 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 agagatcagtgaggaagatgaaga 80 ||||| |||||||||||||||||| Sbjct: 8199 agagaacagtgaggaagatgaaga 8176
>emb|AJ584653.1| Gallus gallus mRNA for basement membrane-specific heparan sulfate proteoglycan core protein precursor (HSPG gene) Length = 12255 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 tgccacagcagcagcccctc 229 |||||||||||||||||||| Sbjct: 11795 tgccacagcagcagcccctc 11776
>emb|BX323576.9| Zebrafish DNA sequence from clone DKEYP-77A12 in linkage group 7, complete sequence Length = 163069 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 cacaggtgaaaaacgctacaattt 188 ||||||||||||||| |||||||| Sbjct: 94689 cacaggtgaaaaacgatacaattt 94666
>gb|AC022613.13| Homo sapiens chromosome 15, clone RP11-680F8, complete sequence Length = 188117 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 gaagaataataattgcatct 520 |||||||||||||||||||| Sbjct: 98048 gaagaataataattgcatct 98067
>emb|BX322588.8| Zebrafish DNA sequence from clone DKEYP-55C8 in linkage group 2, complete sequence Length = 192641 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 605 tagatttttcttgcactcat 624 |||||||||||||||||||| Sbjct: 142108 tagatttttcttgcactcat 142089
>dbj|AK044598.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930026E05 product:oxysterol binding protein 2, full insert sequence Length = 2701 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 agagatcagtgaggaagatgaaga 80 ||||| |||||||||||||||||| Sbjct: 141 agagaacagtgaggaagatgaaga 164
>gb|BC051185.1| Mus musculus oxysterol binding protein 2, mRNA (cDNA clone IMAGE:6467654), containing frame-shift errors Length = 1810 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 agagatcagtgaggaagatgaaga 80 ||||| |||||||||||||||||| Sbjct: 312 agagaacagtgaggaagatgaaga 335
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 ctctgaatcagctgatggtg 358 |||||||||||||||||||| Sbjct: 19319522 ctctgaatcagctgatggtg 19319503
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 tgaagcacaatctgaaagtg 106 |||||||||||||||||||| Sbjct: 4434455 tgaagcacaatctgaaagtg 4434436
>emb|BX322607.6| Zebrafish DNA sequence from clone DKEYP-20F6 in linkage group 2, complete sequence Length = 167493 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 605 tagatttttcttgcactcat 624 |||||||||||||||||||| Sbjct: 133474 tagatttttcttgcactcat 133455
>gb|DQ015919.1| Homo sapiens tight junction protein 1 (zona occludens 1) (TJP1) gene, complete cds Length = 125625 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 gaagaataataattgcatct 520 |||||||||||||||||||| Sbjct: 81254 gaagaataataattgcatct 81235
>gb|AC120381.13| Mus musculus chromosome 5, clone RP24-266G11, complete sequence Length = 166871 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 gggagaagaagaaagctgtg 252 |||||||||||||||||||| Sbjct: 102883 gggagaagaagaaagctgtg 102902
>gb|AC130004.4| Homo sapiens 3 BAC RP11-237K2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 118699 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 578 ttggtgtgtttggtgatgat 597 |||||||||||||||||||| Sbjct: 91688 ttggtgtgtttggtgatgat 91707
>dbj|AP002484.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0489A01 Length = 137174 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 tgaagcacaatctgaaagtg 106 |||||||||||||||||||| Sbjct: 94537 tgaagcacaatctgaaagtg 94518
>gb|AE016754.1| Mus musculus chromosome 10 high-growth region, section 2 of 2 of the complete sequence Length = 303688 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 cagtgaggaagatgaagaag 82 |||||||||||||||||||| Sbjct: 206065 cagtgaggaagatgaagaag 206046
>dbj|AP005450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0438E12 Length = 146851 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 ctctgaatcagctgatggtg 358 |||||||||||||||||||| Sbjct: 24295 ctctgaatcagctgatggtg 24276
>dbj|AB019231.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MGO3 Length = 43570 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 gaggagaggaaaaaagcaga 271 |||||||||||||||||||| Sbjct: 25007 gaggagaggaaaaaagcaga 24988
>gb|AF128626.1|AF128626 Dictyostelium discoideum RNA binding protein PufA (pufA) gene, complete cds Length = 2940 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 578 ttggtgtgtttggtgatgat 597 |||||||||||||||||||| Sbjct: 1328 ttggtgtgtttggtgatgat 1309
>dbj|AK071835.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115A04, full insert sequence Length = 1679 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 ctctgaatcagctgatggtg 358 |||||||||||||||||||| Sbjct: 1034 ctctgaatcagctgatggtg 1015
>gb|AC154756.2| Mus musculus BAC clone RP23-114J15 from 13, complete sequence Length = 189515 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 376 ttctcccaggctgaaactgttgat 399 ||||| |||||||||||||||||| Sbjct: 125525 ttctctcaggctgaaactgttgat 125548
>emb|BX247878.5| Zebrafish DNA sequence from clone CH211-266O5 in linkage group 7, complete sequence Length = 190715 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 cacaggtgaaaaacgctacaattt 188 ||||||||||||||| |||||||| Sbjct: 94816 cacaggtgaaaaacgatacaattt 94839
>emb|BX296516.3| Zebrafish DNA sequence from clone DKEY-219E20 in linkage group 20, complete sequence Length = 160555 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 ggagaagaagaaagctgtga 253 |||||||||||||||||||| Sbjct: 13494 ggagaagaagaaagctgtga 13475
>gb|AC159324.2| Mus musculus BAC clone RP23-9D1 from chromosome 12, complete sequence Length = 207280 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 tgccacagcagcagcccctc 229 |||||||||||||||||||| Sbjct: 158805 tgccacagcagcagcccctc 158786
>emb|AL645483.7| Mouse DNA sequence from clone RP23-213O14 on chromosome 4, complete sequence Length = 87103 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 gaagaaagctgtgaggagaggaaa 263 |||||||||||| ||||||||||| Sbjct: 72688 gaagaaagctgtcaggagaggaaa 72711 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,191,170 Number of Sequences: 3902068 Number of extensions: 7191170 Number of successful extensions: 152918 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 152487 Number of HSP's gapped (non-prelim): 423 length of query: 713 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 690 effective length of database: 17,143,297,704 effective search space: 11828875415760 effective search space used: 11828875415760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)