Clone Name | basd2e20 |
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Clone Library Name | barley_pub |
>gb|AY109476.1| Zea mays CL1535_1 mRNA sequence Length = 5375 Score = 143 bits (72), Expect = 3e-31 Identities = 179/217 (82%) Strand = Plus / Plus Query: 6 ggaaacagtttgttttggttagaagagcagcaacacatctacaatcttttgttagaggga 65 |||||||||||| | | ||| |||| |||||||||| || ||||||||||| ||||| | Sbjct: 2626 ggaaacagtttgctgagcttaaaagatcagcaacacagctgcaatcttttgtcagaggaa 2685 Query: 66 ccttggttcgtaatttgtacgagtgcatgagacgagaagcagcagcagtgaaaatacnnn 125 |||||| |||||| ||||| ||||||||||| | |||||||||||||||||||||| Sbjct: 2686 ccttggctcgtaagttgtatgagtgcatgaggcaggaagcagcagcagtgaaaatacaaa 2745 Query: 126 nnnntgtgcgtcgtcacaaagcacgcggatcttatttactactgcaagcagctacagtca 185 | |||| || ||||||||||| | ||||||||||| | ||||||||||| || ||| Sbjct: 2746 agaatatgcgacgccacaaagcacgggaatcttatttacaattgcaagcagctgcaatca 2805 Query: 186 cgctgcagactggtgctagggcaatgtctgctcgcaa 222 | ||||||| ||| |||||||||||||||||||| Sbjct: 2806 cattgcagacaggtttaagggcaatgtctgctcgcaa 2842
>gb|AF104924.2|AF104924 Zea mays unconventional myosin heavy chain (MYO1) mRNA, complete cds Length = 5375 Score = 143 bits (72), Expect = 3e-31 Identities = 179/217 (82%) Strand = Plus / Plus Query: 6 ggaaacagtttgttttggttagaagagcagcaacacatctacaatcttttgttagaggga 65 |||||||||||| | | ||| |||| |||||||||| || ||||||||||| ||||| | Sbjct: 2626 ggaaacagtttgctgagcttaaaagatcagcaacacagctgcaatcttttgtcagaggaa 2685 Query: 66 ccttggttcgtaatttgtacgagtgcatgagacgagaagcagcagcagtgaaaatacnnn 125 |||||| |||||| ||||| ||||||||||| | |||||||||||||||||||||| Sbjct: 2686 ccttggctcgtaagttgtatgagtgcatgaggcaggaagcagcagcagtgaaaatacaaa 2745 Query: 126 nnnntgtgcgtcgtcacaaagcacgcggatcttatttactactgcaagcagctacagtca 185 | |||| || ||||||||||| | ||||||||||| | ||||||||||| || ||| Sbjct: 2746 agaatatgcgacgccacaaagcacgggaatcttatttacaattgcaagcagctgcaatca 2805 Query: 186 cgctgcagactggtgctagggcaatgtctgctcgcaa 222 | ||||||| ||| |||||||||||||||||||| Sbjct: 2806 cattgcagacaggtttaagggcaatgtctgctcgcaa 2842
>gb|AC092779.5| Oryza sativa chromosome 3 BAC OSJNBb0024N19 genomic sequence, complete sequence Length = 121849 Score = 67.9 bits (34), Expect = 1e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 6 ggaaacagtttgttttggttagaagagcagcaacacatctacaatcttttgttagagg 63 ||||||||||||||| | | |||||| |||||||||| ||||||||||| |||||||| Sbjct: 90086 ggaaacagtttgtttcgctcagaagatcagcaacacagctacaatctttcgttagagg 90143 Score = 65.9 bits (33), Expect = 5e-08 Identities = 128/162 (79%) Strand = Plus / Plus Query: 61 agggaccttggttcgtaatttgtacgagtgcatgagacgagaagcagcagcagtgaaaat 120 ||||||||||| ||||| || ||||| |||||||| || |||||| |||||||||| || Sbjct: 90231 agggaccttggcgcgtaaattatacgaatgcatgaggcgggaagcatcagcagtgaagat 90290 Query: 121 acnnnnnnntgtgcgtcgtcacaaagcacgcggatcttatttactactgcaagcagctac 180 || ||| |||||||||||||| |||| |||||||||| ||| || | ||| | Sbjct: 90291 acaaaagaatgttcgtcgtcacaaagctcgcgtgtcttatttacaactacaggaggctgc 90350 Query: 181 agtcacgctgcagactggtgctagggcaatgtctgctcgcaa 222 | ||||| ||||||| || |||||||||||||| ||||| Sbjct: 90351 aatcacgttgcagacaggattaagggcaatgtctgcccgcaa 90392
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 67.9 bits (34), Expect = 1e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 6 ggaaacagtttgttttggttagaagagcagcaacacatctacaatcttttgttagagg 63 ||||||||||||||| | | |||||| |||||||||| ||||||||||| |||||||| Sbjct: 27088805 ggaaacagtttgtttcgctcagaagatcagcaacacagctacaatctttcgttagagg 27088748 Score = 65.9 bits (33), Expect = 5e-08 Identities = 128/162 (79%) Strand = Plus / Minus Query: 61 agggaccttggttcgtaatttgtacgagtgcatgagacgagaagcagcagcagtgaaaat 120 ||||||||||| ||||| || ||||| |||||||| || |||||| |||||||||| || Sbjct: 27088660 agggaccttggcgcgtaaattatacgaatgcatgaggcgggaagcatcagcagtgaagat 27088601 Query: 121 acnnnnnnntgtgcgtcgtcacaaagcacgcggatcttatttactactgcaagcagctac 180 || ||| |||||||||||||| |||| |||||||||| ||| || | ||| | Sbjct: 27088600 acaaaagaatgttcgtcgtcacaaagctcgcgtgtcttatttacaactacaggaggctgc 27088541 Query: 181 agtcacgctgcagactggtgctagggcaatgtctgctcgcaa 222 | ||||| ||||||| || |||||||||||||| ||||| Sbjct: 27088540 aatcacgttgcagacaggattaagggcaatgtctgcccgcaa 27088499
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 67.9 bits (34), Expect = 1e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 6 ggaaacagtttgttttggttagaagagcagcaacacatctacaatcttttgttagagg 63 ||||||||||||||| | | |||||| |||||||||| ||||||||||| |||||||| Sbjct: 27180128 ggaaacagtttgtttcgctcagaagatcagcaacacagctacaatctttcgttagagg 27180071 Score = 65.9 bits (33), Expect = 5e-08 Identities = 128/162 (79%) Strand = Plus / Minus Query: 61 agggaccttggttcgtaatttgtacgagtgcatgagacgagaagcagcagcagtgaaaat 120 ||||||||||| ||||| || ||||| |||||||| || |||||| |||||||||| || Sbjct: 27179983 agggaccttggcgcgtaaattatacgaatgcatgaggcgggaagcatcagcagtgaagat 27179924 Query: 121 acnnnnnnntgtgcgtcgtcacaaagcacgcggatcttatttactactgcaagcagctac 180 || ||| |||||||||||||| |||| |||||||||| ||| || | ||| | Sbjct: 27179923 acaaaagaatgttcgtcgtcacaaagctcgcgtgtcttatttacaactacaggaggctgc 27179864 Query: 181 agtcacgctgcagactggtgctagggcaatgtctgctcgcaa 222 | ||||| ||||||| || |||||||||||||| ||||| Sbjct: 27179863 aatcacgttgcagacaggattaagggcaatgtctgcccgcaa 27179822
>ref|NM_191733.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4602 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 tgagacgagaagcagcagca 112 |||||||||||||||||||| Sbjct: 2342 tgagacgagaagcagcagca 2361
>emb|CR591284.1| full-length cDNA clone CS0DI086YE22 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1533 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 gttagagggaccttggttcg 75 |||||||||||||||||||| Sbjct: 1085 gttagagggaccttggttcg 1066
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 tgagacgagaagcagcagca 112 |||||||||||||||||||| Sbjct: 29658969 tgagacgagaagcagcagca 29658950
>gb|AC024085.5|AC024085 Human Chromosome 7 clone RP11-190G13, complete sequence Length = 168405 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 gttagagggaccttggttcg 75 |||||||||||||||||||| Sbjct: 137106 gttagagggaccttggttcg 137125
>dbj|AP003410.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1142C05 Length = 151457 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 tgagacgagaagcagcagca 112 |||||||||||||||||||| Sbjct: 128789 tgagacgagaagcagcagca 128770
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib Length = 2013089 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 94 gagacgagaagcagcagcagtgaa 117 |||||||||||||||| ||||||| Sbjct: 730768 gagacgagaagcagcaacagtgaa 730745
>gb|AC104893.13| Mus musculus chromosome 1, clone RP23-288O15, complete sequence Length = 150296 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 acatctacaatcttttgtta 59 |||||||||||||||||||| Sbjct: 18532 acatctacaatcttttgtta 18551
>emb|AL731709.19| Mouse DNA sequence from clone RP23-316M14 on chromosome 2, complete sequence Length = 211034 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 gcatgagacgagaagcagcagcag 113 ||||||||| |||||||||||||| Sbjct: 145605 gcatgagacaagaagcagcagcag 145582 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,131,340 Number of Sequences: 3902068 Number of extensions: 2131340 Number of successful extensions: 149430 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 149242 Number of HSP's gapped (non-prelim): 182 length of query: 224 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 202 effective length of database: 17,147,199,772 effective search space: 3463734353944 effective search space used: 3463734353944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)