ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2e20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY109476.1| Zea mays CL1535_1 mRNA sequence 143 3e-31
2gb|AF104924.2|AF104924 Zea mays unconventional myosin heavy chai... 143 3e-31
3gb|AC092779.5| Oryza sativa chromosome 3 BAC OSJNBb0024N19 genom... 68 1e-08
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 68 1e-08
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 68 1e-08
6ref|NM_191733.1| Oryza sativa (japonica cultivar-group), predic... 40 2.9
7emb|CR591284.1| full-length cDNA clone CS0DI086YE22 of Placenta ... 40 2.9
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.9
9gb|AC024085.5|AC024085 Human Chromosome 7 clone RP11-190G13, com... 40 2.9
10dbj|AP003410.4| Oryza sativa (japonica cultivar-group) genomic D... 40 2.9
11emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 40 2.9
12gb|AC104893.13| Mus musculus chromosome 1, clone RP23-288O15, co... 40 2.9
13emb|AL731709.19| Mouse DNA sequence from clone RP23-316M14 on ch... 40 2.9 
>gb|AY109476.1| Zea mays CL1535_1 mRNA sequence
          Length = 5375

 Score =  143 bits (72), Expect = 3e-31
 Identities = 179/217 (82%)
 Strand = Plus / Plus

                                                                        
Query: 6    ggaaacagtttgttttggttagaagagcagcaacacatctacaatcttttgttagaggga 65
            |||||||||||| |  | ||| |||| |||||||||| || ||||||||||| ||||| |
Sbjct: 2626 ggaaacagtttgctgagcttaaaagatcagcaacacagctgcaatcttttgtcagaggaa 2685

                                                                        
Query: 66   ccttggttcgtaatttgtacgagtgcatgagacgagaagcagcagcagtgaaaatacnnn 125
            |||||| |||||| ||||| ||||||||||| |  ||||||||||||||||||||||   
Sbjct: 2686 ccttggctcgtaagttgtatgagtgcatgaggcaggaagcagcagcagtgaaaatacaaa 2745

                                                                        
Query: 126  nnnntgtgcgtcgtcacaaagcacgcggatcttatttactactgcaagcagctacagtca 185
                | |||| || ||||||||||| | ||||||||||| | ||||||||||| || |||
Sbjct: 2746 agaatatgcgacgccacaaagcacgggaatcttatttacaattgcaagcagctgcaatca 2805

                                                 
Query: 186  cgctgcagactggtgctagggcaatgtctgctcgcaa 222
            |  ||||||| |||   ||||||||||||||||||||
Sbjct: 2806 cattgcagacaggtttaagggcaatgtctgctcgcaa 2842
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>gb|AF104924.2|AF104924 Zea mays unconventional myosin heavy chain (MYO1) mRNA, complete cds
          Length = 5375

 Score =  143 bits (72), Expect = 3e-31
 Identities = 179/217 (82%)
 Strand = Plus / Plus

                                                                        
Query: 6    ggaaacagtttgttttggttagaagagcagcaacacatctacaatcttttgttagaggga 65
            |||||||||||| |  | ||| |||| |||||||||| || ||||||||||| ||||| |
Sbjct: 2626 ggaaacagtttgctgagcttaaaagatcagcaacacagctgcaatcttttgtcagaggaa 2685

                                                                        
Query: 66   ccttggttcgtaatttgtacgagtgcatgagacgagaagcagcagcagtgaaaatacnnn 125
            |||||| |||||| ||||| ||||||||||| |  ||||||||||||||||||||||   
Sbjct: 2686 ccttggctcgtaagttgtatgagtgcatgaggcaggaagcagcagcagtgaaaatacaaa 2745

                                                                        
Query: 126  nnnntgtgcgtcgtcacaaagcacgcggatcttatttactactgcaagcagctacagtca 185
                | |||| || ||||||||||| | ||||||||||| | ||||||||||| || |||
Sbjct: 2746 agaatatgcgacgccacaaagcacgggaatcttatttacaattgcaagcagctgcaatca 2805

                                                 
Query: 186  cgctgcagactggtgctagggcaatgtctgctcgcaa 222
            |  ||||||| |||   ||||||||||||||||||||
Sbjct: 2806 cattgcagacaggtttaagggcaatgtctgctcgcaa 2842
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>gb|AC092779.5| Oryza sativa chromosome 3 BAC OSJNBb0024N19 genomic sequence, complete
             sequence
          Length = 121849

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                       
Query: 6     ggaaacagtttgttttggttagaagagcagcaacacatctacaatcttttgttagagg 63
             ||||||||||||||| | | |||||| |||||||||| ||||||||||| ||||||||
Sbjct: 90086 ggaaacagtttgtttcgctcagaagatcagcaacacagctacaatctttcgttagagg 90143



 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 128/162 (79%)
 Strand = Plus / Plus

                                                                         
Query: 61    agggaccttggttcgtaatttgtacgagtgcatgagacgagaagcagcagcagtgaaaat 120
             |||||||||||  ||||| || ||||| |||||||| || |||||| |||||||||| ||
Sbjct: 90231 agggaccttggcgcgtaaattatacgaatgcatgaggcgggaagcatcagcagtgaagat 90290

                                                                         
Query: 121   acnnnnnnntgtgcgtcgtcacaaagcacgcggatcttatttactactgcaagcagctac 180
             ||       ||| |||||||||||||| ||||  |||||||||| ||| || |  ||| |
Sbjct: 90291 acaaaagaatgttcgtcgtcacaaagctcgcgtgtcttatttacaactacaggaggctgc 90350

                                                       
Query: 181   agtcacgctgcagactggtgctagggcaatgtctgctcgcaa 222
             | ||||| ||||||| ||    |||||||||||||| |||||
Sbjct: 90351 aatcacgttgcagacaggattaagggcaatgtctgcccgcaa 90392
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                          
Query: 6        ggaaacagtttgttttggttagaagagcagcaacacatctacaatcttttgttagagg 63
                ||||||||||||||| | | |||||| |||||||||| ||||||||||| ||||||||
Sbjct: 27088805 ggaaacagtttgtttcgctcagaagatcagcaacacagctacaatctttcgttagagg 27088748



 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 128/162 (79%)
 Strand = Plus / Minus

                                                                            
Query: 61       agggaccttggttcgtaatttgtacgagtgcatgagacgagaagcagcagcagtgaaaat 120
                |||||||||||  ||||| || ||||| |||||||| || |||||| |||||||||| ||
Sbjct: 27088660 agggaccttggcgcgtaaattatacgaatgcatgaggcgggaagcatcagcagtgaagat 27088601

                                                                            
Query: 121      acnnnnnnntgtgcgtcgtcacaaagcacgcggatcttatttactactgcaagcagctac 180
                ||       ||| |||||||||||||| ||||  |||||||||| ||| || |  ||| |
Sbjct: 27088600 acaaaagaatgttcgtcgtcacaaagctcgcgtgtcttatttacaactacaggaggctgc 27088541

                                                          
Query: 181      agtcacgctgcagactggtgctagggcaatgtctgctcgcaa 222
                | ||||| ||||||| ||    |||||||||||||| |||||
Sbjct: 27088540 aatcacgttgcagacaggattaagggcaatgtctgcccgcaa 27088499
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                          
Query: 6        ggaaacagtttgttttggttagaagagcagcaacacatctacaatcttttgttagagg 63
                ||||||||||||||| | | |||||| |||||||||| ||||||||||| ||||||||
Sbjct: 27180128 ggaaacagtttgtttcgctcagaagatcagcaacacagctacaatctttcgttagagg 27180071



 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 128/162 (79%)
 Strand = Plus / Minus

                                                                            
Query: 61       agggaccttggttcgtaatttgtacgagtgcatgagacgagaagcagcagcagtgaaaat 120
                |||||||||||  ||||| || ||||| |||||||| || |||||| |||||||||| ||
Sbjct: 27179983 agggaccttggcgcgtaaattatacgaatgcatgaggcgggaagcatcagcagtgaagat 27179924

                                                                            
Query: 121      acnnnnnnntgtgcgtcgtcacaaagcacgcggatcttatttactactgcaagcagctac 180
                ||       ||| |||||||||||||| ||||  |||||||||| ||| || |  ||| |
Sbjct: 27179923 acaaaagaatgttcgtcgtcacaaagctcgcgtgtcttatttacaactacaggaggctgc 27179864

                                                          
Query: 181      agtcacgctgcagactggtgctagggcaatgtctgctcgcaa 222
                | ||||| ||||||| ||    |||||||||||||| |||||
Sbjct: 27179863 aatcacgttgcagacaggattaagggcaatgtctgcccgcaa 27179822
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>ref|NM_191733.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4602

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 93   tgagacgagaagcagcagca 112
            ||||||||||||||||||||
Sbjct: 2342 tgagacgagaagcagcagca 2361
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>emb|CR591284.1| full-length cDNA clone CS0DI086YE22 of Placenta Cot 25-normalized of
            Homo sapiens (human)
          Length = 1533

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 56   gttagagggaccttggttcg 75
            ||||||||||||||||||||
Sbjct: 1085 gttagagggaccttggttcg 1066
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 93       tgagacgagaagcagcagca 112
                ||||||||||||||||||||
Sbjct: 29658969 tgagacgagaagcagcagca 29658950
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>gb|AC024085.5|AC024085 Human Chromosome 7 clone RP11-190G13, complete sequence
          Length = 168405

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 56     gttagagggaccttggttcg 75
              ||||||||||||||||||||
Sbjct: 137106 gttagagggaccttggttcg 137125
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>dbj|AP003410.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1142C05
          Length = 151457

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     tgagacgagaagcagcagca 112
              ||||||||||||||||||||
Sbjct: 128789 tgagacgagaagcagcagca 128770
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>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib
          Length = 2013089

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 94     gagacgagaagcagcagcagtgaa 117
              |||||||||||||||| |||||||
Sbjct: 730768 gagacgagaagcagcaacagtgaa 730745
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>gb|AC104893.13| Mus musculus chromosome 1, clone RP23-288O15, complete sequence
          Length = 150296

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    acatctacaatcttttgtta 59
             ||||||||||||||||||||
Sbjct: 18532 acatctacaatcttttgtta 18551
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>emb|AL731709.19| Mouse DNA sequence from clone RP23-316M14 on chromosome 2, complete
              sequence
          Length = 211034

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 90     gcatgagacgagaagcagcagcag 113
              ||||||||| ||||||||||||||
Sbjct: 145605 gcatgagacaagaagcagcagcag 145582


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,131,340
Number of Sequences: 3902068
Number of extensions: 2131340
Number of successful extensions: 149430
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 149242
Number of HSP's gapped (non-prelim): 182
length of query: 224
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 202
effective length of database: 17,147,199,772
effective search space: 3463734353944
effective search space used: 3463734353944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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