Clone Name | basd2e18 |
---|---|
Clone Library Name | barley_pub |
>gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0009C07, complete sequence Length = 148731 Score = 40.1 bits (20), Expect = 0.57 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 gcggctgctcagcggcggcg 34 |||||||||||||||||||| Sbjct: 98839 gcggctgctcagcggcggcg 98820
>ref|NM_169222.2| Drosophila melanogaster CG31462-PA (CG31462) mRNA, complete cds Length = 3159 Score = 40.1 bits (20), Expect = 0.57 Identities = 23/24 (95%) Strand = Plus / Minus Query: 14 ggcggctgctcagcggcggcgcgg 37 ||||||| |||||||||||||||| Sbjct: 803 ggcggctcctcagcggcggcgcgg 780
>gb|AC012646.6|AC012646 Drosophila melanogaster, chromosome 3R, region 85A-85B, BAC clone BACR03F16, complete sequence Length = 204681 Score = 40.1 bits (20), Expect = 0.57 Identities = 23/24 (95%) Strand = Plus / Minus Query: 14 ggcggctgctcagcggcggcgcgg 37 ||||||| |||||||||||||||| Sbjct: 200212 ggcggctcctcagcggcggcgcgg 200189
>gb|AC009539.6|AC009539 Drosophila melanogaster, chromosome 3R, region 85A-85A, BAC clone BACR33N15, complete sequence Length = 187701 Score = 40.1 bits (20), Expect = 0.57 Identities = 23/24 (95%) Strand = Plus / Minus Query: 14 ggcggctgctcagcggcggcgcgg 37 ||||||| |||||||||||||||| Sbjct: 73649 ggcggctcctcagcggcggcgcgg 73626
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 0.57 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 gcggctgctcagcggcggcg 34 |||||||||||||||||||| Sbjct: 28944546 gcggctgctcagcggcggcg 28944527
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 0.57 Identities = 23/24 (95%) Strand = Plus / Minus Query: 15 gcggctgctcagcggcggcgcggc 38 |||||||| ||||||||||||||| Sbjct: 2957682 gcggctgcgcagcggcggcgcggc 2957659
>gb|AY589580.1| Triticum aestivum beta-expansin TaEXPB3 mRNA, complete cds Length = 1013 Score = 40.1 bits (20), Expect = 0.57 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 cggctgctcagcggcggcgc 35 |||||||||||||||||||| Sbjct: 133 cggctgctcagcggcggcgc 114
>gb|AE003678.3| Drosophila melanogaster chromosome 3R, section 16 of 118 of the complete sequence Length = 244757 Score = 40.1 bits (20), Expect = 0.57 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 ggcggctgctcagcggcggcgcgg 37 ||||||| |||||||||||||||| Sbjct: 188232 ggcggctcctcagcggcggcgcgg 188255
>gb|AY543541.1| Triticum aestivum expansin EXPB7 mRNA, complete cds Length = 1056 Score = 40.1 bits (20), Expect = 0.57 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 cggctgctcagcggcggcgc 35 |||||||||||||||||||| Sbjct: 165 cggctgctcagcggcggcgc 146
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 38.2 bits (19), Expect = 2.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 15 gcggctgctcagcggcggcgcgg 37 |||||||||||||| |||||||| Sbjct: 5532611 gcggctgctcagcgtcggcgcgg 5532589 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 gctcagcggcggcgcggc 38 |||||||||||||||||| Sbjct: 2435877 gctcagcggcggcgcggc 2435860
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 38.2 bits (19), Expect = 2.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 14 ggcggctgctcagcggcggcgcg 36 ||||| ||||||||||||||||| Sbjct: 1149015 ggcggatgctcagcggcggcgcg 1149037
>gb|DQ486030.1| Antheraea pernyi nucleopolyhedrovirus, complete genome Length = 126479 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 gcggcggcgcggcagaagc 44 ||||||||||||||||||| Sbjct: 51276 gcggcggcgcggcagaagc 51258
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 18 gctgctcagcggcggcgcg 36 ||||||||||||||||||| Sbjct: 2656318 gctgctcagcggcggcgcg 2656336
>emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome; segment 4/13 Length = 349306 Score = 38.2 bits (19), Expect = 2.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 14 ggcggctgctcagcggcggcgcg 36 ||||| ||||||||||||||||| Sbjct: 115184 ggcggatgctcagcggcggcgcg 115206
>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 4/14 Length = 327650 Score = 38.2 bits (19), Expect = 2.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 14 ggcggctgctcagcggcggcgcg 36 ||||| ||||||||||||||||| Sbjct: 162418 ggcggatgctcagcggcggcgcg 162440
>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25, complete sequence Length = 169168 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 gcgcggcagaagcccggtg 50 ||||||||||||||||||| Sbjct: 33462 gcgcggcagaagcccggtg 33444
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 38.2 bits (19), Expect = 2.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 16 cggctgctcagcggcggcgcggc 38 ||||| ||||||||||||||||| Sbjct: 2995450 cggcttctcagcggcggcgcggc 2995472
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 38.2 bits (19), Expect = 2.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 14 ggcggctgctcagcggcggcgcg 36 ||||||||||| ||||||||||| Sbjct: 1407897 ggcggctgctcggcggcggcgcg 1407919
>gb|AC168212.7| Mus musculus chromosome 18, clone RP23-290N19, complete sequence Length = 197719 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 38 cagaagcccggtgttctg 55 |||||||||||||||||| Sbjct: 146545 cagaagcccggtgttctg 146562
>gb|AC137586.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0054A16, complete sequence Length = 164605 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 21 gctcagcggcggcgcggc 38 |||||||||||||||||| Sbjct: 33629 gctcagcggcggcgcggc 33646
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 36.2 bits (18), Expect = 8.8 Identities = 21/22 (95%) Strand = Plus / Plus Query: 21 gctcagcggcggcgcggcagaa 42 |||| ||||||||||||||||| Sbjct: 1220548 gctcggcggcggcgcggcagaa 1220569
>ref|XM_983863.1| PREDICTED: Mus musculus breakpoint cluster region homolog, transcript variant 3 (Bcr), mRNA Length = 6533 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 gctcagcggcggcgcggc 38 |||||||||||||||||| Sbjct: 83 gctcagcggcggcgcggc 66
>ref|XM_983785.1| PREDICTED: Mus musculus breakpoint cluster region homolog, transcript variant 1 (Bcr), mRNA Length = 4565 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 gctcagcggcggcgcggc 38 |||||||||||||||||| Sbjct: 83 gctcagcggcggcgcggc 66
>ref|XM_898043.2| PREDICTED: Mus musculus breakpoint cluster region homolog, transcript variant 2 (Bcr), mRNA Length = 6530 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 gctcagcggcggcgcggc 38 |||||||||||||||||| Sbjct: 83 gctcagcggcggcgcggc 66
>ref|XM_983429.1| PREDICTED: Mus musculus breakpoint cluster region homolog, transcript variant 3 (Bcr), mRNA Length = 4564 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 gctcagcggcggcgcggc 38 |||||||||||||||||| Sbjct: 83 gctcagcggcggcgcggc 66
>gb|BC079383.1| Rattus norvegicus TBC1 domain family, member 20, mRNA (cDNA clone MGC:94895 IMAGE:7111239), complete cds Length = 1391 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 10 gggaggcggctgctcagc 27 |||||||||||||||||| Sbjct: 980 gggaggcggctgctcagc 997
>ref|NM_001004281.1| Rattus norvegicus TBC1 domain family, member 20 (Tbc1d20), mRNA Length = 1391 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 10 gggaggcggctgctcagc 27 |||||||||||||||||| Sbjct: 980 gggaggcggctgctcagc 997
>emb|X52830.1|MM5BCR Mouse BCR gene promoter region and partial cds Length = 1135 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 gctcagcggcggcgcggc 38 |||||||||||||||||| Sbjct: 951 gctcagcggcggcgcggc 934
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 15 gcggctgctcagcggcgg 32 |||||||||||||||||| Sbjct: 241170 gcggctgctcagcggcgg 241153
>gb|AC151604.2| Emiliania huxleyi clone JGIACCU-13A1, complete sequence Length = 36530 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 18 gctgctcagcggcggcgc 35 |||||||||||||||||| Sbjct: 24214 gctgctcagcggcggcgc 24231
>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome Length = 2679306 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aggcggctgctcagcggc 30 |||||||||||||||||| Sbjct: 756323 aggcggctgctcagcggc 756306
>gb|AC160402.8| Mus musculus 10 BAC RP23-115L17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 224566 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 21 gctcagcggcggcgcggc 38 |||||||||||||||||| Sbjct: 148329 gctcagcggcggcgcggc 148346
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 36.2 bits (18), Expect = 8.8 Identities = 21/22 (95%) Strand = Plus / Minus Query: 16 cggctgctcagcggcggcgcgg 37 ||||||| |||||||||||||| Sbjct: 27065676 cggctgcgcagcggcggcgcgg 27065655
>gb|AE004886.1| Pseudomonas aeruginosa PAO1, section 447 of 529 of the complete genome Length = 10929 Score = 36.2 bits (18), Expect = 8.8 Identities = 21/22 (95%) Strand = Plus / Minus Query: 27 cggcggcgcggcagaagcccgg 48 ||||| |||||||||||||||| Sbjct: 1004 cggcgtcgcggcagaagcccgg 983
>gb|AE004753.1| Pseudomonas aeruginosa PAO1, section 314 of 529 of the complete genome Length = 16268 Score = 36.2 bits (18), Expect = 8.8 Identities = 21/22 (95%) Strand = Plus / Minus Query: 17 ggctgctcagcggcggcgcggc 38 |||||| ||||||||||||||| Sbjct: 11869 ggctgcgcagcggcggcgcggc 11848
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 16 cggctgctcagcggcggc 33 |||||||||||||||||| Sbjct: 1970151 cggctgctcagcggcggc 1970168
>dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1486_E07 Length = 110494 Score = 36.2 bits (18), Expect = 8.8 Identities = 21/22 (95%) Strand = Plus / Minus Query: 16 cggctgctcagcggcggcgcgg 37 ||||||| |||||||||||||| Sbjct: 37325 cggctgcgcagcggcggcgcgg 37304
>dbj|AP005108.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0461B08 Length = 153743 Score = 36.2 bits (18), Expect = 8.8 Identities = 21/22 (95%) Strand = Plus / Minus Query: 16 cggctgctcagcggcggcgcgg 37 ||||||| |||||||||||||| Sbjct: 118878 cggctgcgcagcggcggcgcgg 118857
>dbj|AK104658.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-D06, full insert sequence Length = 1128 Score = 36.2 bits (18), Expect = 8.8 Identities = 21/22 (95%) Strand = Plus / Minus Query: 16 cggctgctcagcggcggcgcgg 37 ||||||| |||||||||||||| Sbjct: 952 cggctgcgcagcggcggcgcgg 931
>dbj|AK103807.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147A07, full insert sequence Length = 1205 Score = 36.2 bits (18), Expect = 8.8 Identities = 21/22 (95%) Strand = Plus / Minus Query: 16 cggctgctcagcggcggcgcgg 37 ||||||| |||||||||||||| Sbjct: 1007 cggctgcgcagcggcggcgcgg 986
>dbj|AK061769.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C05, full insert sequence Length = 1136 Score = 36.2 bits (18), Expect = 8.8 Identities = 21/22 (95%) Strand = Plus / Minus Query: 16 cggctgctcagcggcggcgcgg 37 ||||||| |||||||||||||| Sbjct: 952 cggctgcgcagcggcggcgcgg 931
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 19 ctgctcagcggcggcgcg 36 |||||||||||||||||| Sbjct: 4014791 ctgctcagcggcggcgcg 4014774
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 21 gctcagcggcggcgcggc 38 |||||||||||||||||| Sbjct: 15502766 gctcagcggcggcgcggc 15502783
>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome Length = 2519802 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 13 aggcggctgctcagcggc 30 |||||||||||||||||| Sbjct: 2185855 aggcggctgctcagcggc 2185872
>gb|AF022737.1|AF022737 Oryza sativa transmembrane protein mRNA, complete cds Length = 1140 Score = 36.2 bits (18), Expect = 8.8 Identities = 21/22 (95%) Strand = Plus / Minus Query: 16 cggctgctcagcggcggcgcgg 37 ||||||| |||||||||||||| Sbjct: 947 cggctgcgcagcggcggcgcgg 926
>gb|L10612.1|HUMGIA Human glycosylation-inhibiting factor mRNA, complete cds Length = 557 Score = 36.2 bits (18), Expect = 8.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 21 gctcagcggcggcgcggc 38 |||||||||||||||||| Sbjct: 11 gctcagcggcggcgcggc 28
>dbj|AB045630.1| Pseudomonas aeruginosa genes for glutamate-tRNA synthetase, CbrA, CbrB, complete cds Length = 6979 Score = 36.2 bits (18), Expect = 8.8 Identities = 21/22 (95%) Strand = Plus / Minus Query: 27 cggcggcgcggcagaagcccgg 48 ||||| |||||||||||||||| Sbjct: 647 cggcgtcgcggcagaagcccgg 626 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 410,261 Number of Sequences: 3902068 Number of extensions: 410261 Number of successful extensions: 37154 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36151 Number of HSP's gapped (non-prelim): 1003 length of query: 61 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 40 effective length of database: 17,151,101,840 effective search space: 686044073600 effective search space used: 686044073600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)