ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2e13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FTSH_CAPAN (Q39444) Cell division protein ftsH homolog, chloropl... 32 0.37
2FTSH1_ARATH (Q39102) Cell division protein ftsH homolog 1, chlor... 32 0.37
3FTSH2_ARATH (Q9FH02) Cell division protein ftsH homolog 2, chlor... 32 0.37
4FTSH_TOBAC (O82150) Cell division protein ftsH homolog, chloropl... 32 0.37
5FTSH_MEDSA (Q9BAE0) Cell division protein ftsH homolog, chloropl... 31 1.1

>FTSH_CAPAN (Q39444) Cell division protein ftsH homolog, chloroplast precursor|
           (EC 3.4.24.-) (Fragment)
          Length = 662

 Score = 32.3 bits (72), Expect = 0.37
 Identities = 19/29 (65%), Positives = 19/29 (65%)
 Frame = +1

Query: 46  G*AGVPFFSCAAC*VRTSSXFGVGASRVR 132
           G AGVPFFSCAA         GVGASRVR
Sbjct: 285 GEAGVPFFSCAAS-EFVELFVGVGASRVR 312



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>FTSH1_ARATH (Q39102) Cell division protein ftsH homolog 1, chloroplast|
           precursor (EC 3.4.24.-)
          Length = 716

 Score = 32.3 bits (72), Expect = 0.37
 Identities = 19/29 (65%), Positives = 19/29 (65%)
 Frame = +1

Query: 46  G*AGVPFFSCAAC*VRTSSXFGVGASRVR 132
           G AGVPFFSCAA         GVGASRVR
Sbjct: 317 GEAGVPFFSCAAS-EFVELFVGVGASRVR 344



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>FTSH2_ARATH (Q9FH02) Cell division protein ftsH homolog 2, chloroplast|
           precursor (EC 3.4.24.-)
          Length = 704

 Score = 32.3 bits (72), Expect = 0.37
 Identities = 19/29 (65%), Positives = 19/29 (65%)
 Frame = +1

Query: 46  G*AGVPFFSCAAC*VRTSSXFGVGASRVR 132
           G AGVPFFSCAA         GVGASRVR
Sbjct: 305 GEAGVPFFSCAAS-EFVELFVGVGASRVR 332



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>FTSH_TOBAC (O82150) Cell division protein ftsH homolog, chloroplast precursor|
           (EC 3.4.24.-) (DS9)
          Length = 714

 Score = 32.3 bits (72), Expect = 0.37
 Identities = 19/29 (65%), Positives = 19/29 (65%)
 Frame = +1

Query: 46  G*AGVPFFSCAAC*VRTSSXFGVGASRVR 132
           G AGVPFFSCAA         GVGASRVR
Sbjct: 308 GEAGVPFFSCAAS-EFVELFVGVGASRVR 335



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>FTSH_MEDSA (Q9BAE0) Cell division protein ftsH homolog, chloroplast precursor|
           (EC 3.4.24.-)
          Length = 706

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 18/29 (62%), Positives = 18/29 (62%)
 Frame = +1

Query: 46  G*AGVPFFSCAAC*VRTSSXFGVGASRVR 132
           G AG PFFSCAA         GVGASRVR
Sbjct: 308 GEAGTPFFSCAAS-EFVELFVGVGASRVR 335


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,794,571
Number of Sequences: 219361
Number of extensions: 176512
Number of successful extensions: 315
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 80,573,946
effective HSP length: 20
effective length of database: 76,186,726
effective search space used: 1828481424
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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