Clone Name | basd2e13 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009457.1| Triticum aestivum clone wlp1c.pk007.f6:fis, full insert mRNA sequence Length = 1556 Score = 97.6 bits (49), Expect = 8e-18 Identities = 90/99 (90%), Gaps = 4/99 (4%) Strand = Plus / Plus Query: 36 gccgtcgncggggtaggccggggtgcccttcttctcctgcgccgcgtgctgagttcgtac 95 ||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| | Sbjct: 151 gccgtcgccgggg-aggccggggtgcccttcttctcctgcgccgcgt-ctgagttcgt-c 207 Query: 96 gagctcttngttcggcgtgggtgcctccagggtgaggga 134 |||||||| | ||||||| || || |||||||||||||| Sbjct: 208 gagctcttcg-tcggcgtcggcgcgtccagggtgaggga 245
>gb|AY103957.1| Zea mays PCO116832 mRNA sequence Length = 1820 Score = 77.8 bits (39), Expect = 7e-12 Identities = 86/97 (88%), Gaps = 4/97 (4%) Strand = Plus / Plus Query: 33 cgtgccgtcgncggggtaggccggggtgcccttcttctcctgcgccgcgtgctgagttcg 92 |||||||||| |||| |||||||||||||||||||||||||||| || | ||||||||| Sbjct: 235 cgtgccgtcgctgggg-aggccggggtgcccttcttctcctgcgctgcct-ctgagttcg 292 Query: 93 tacgagctcttngttcggcgtgggtgcctccagggtg 129 | ||||||||| | |||| || ||||||||||||||| Sbjct: 293 t-cgagctcttcg-tcggtgtcggtgcctccagggtg 327
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 69.9 bits (35), Expect = 2e-09 Identities = 100/117 (85%), Gaps = 4/117 (3%) Strand = Plus / Minus Query: 18 aagacgctgctcgcccgtgccgtcgncggggtaggccggggtgcccttcttctcctgcgc 77 ||||| ||||| || |||||||||| ||||| ||||||| ||||| |||||||||||||| Sbjct: 30361221 aagacactgctggcgcgtgccgtcgccgggg-aggccggagtgccattcttctcctgcgc 30361163 Query: 78 cgcgtgctgagttcgtacgagctcttngttcggcgtgggtgcctccagggtgaggga 134 ||||| | |||||||| ||||| || | |||| || |||||||||||||| ||||| Sbjct: 30361162 cgcgt-ccgagttcgt-tgagctgttcg-tcggtgtcggtgcctccagggtcaggga 30361109
>dbj|AP003685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0548E04 Length = 138037 Score = 69.9 bits (35), Expect = 2e-09 Identities = 100/117 (85%), Gaps = 4/117 (3%) Strand = Plus / Minus Query: 18 aagacgctgctcgcccgtgccgtcgncggggtaggccggggtgcccttcttctcctgcgc 77 ||||| ||||| || |||||||||| ||||| ||||||| ||||| |||||||||||||| Sbjct: 107816 aagacactgctggcgcgtgccgtcgccgggg-aggccggagtgccattcttctcctgcgc 107758 Query: 78 cgcgtgctgagttcgtacgagctcttngttcggcgtgggtgcctccagggtgaggga 134 ||||| | |||||||| ||||| || | |||| || |||||||||||||| ||||| Sbjct: 107757 cgcgt-ccgagttcgt-tgagctgttcg-tcggtgtcggtgcctccagggtcaggga 107704
>dbj|AK065019.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F19, full insert sequence Length = 2378 Score = 69.9 bits (35), Expect = 2e-09 Identities = 100/117 (85%), Gaps = 4/117 (3%) Strand = Plus / Plus Query: 18 aagacgctgctcgcccgtgccgtcgncggggtaggccggggtgcccttcttctcctgcgc 77 ||||| ||||| || |||||||||| ||||| ||||||| ||||| |||||||||||||| Sbjct: 868 aagacactgctggcgcgtgccgtcgccgggg-aggccggagtgccattcttctcctgcgc 926 Query: 78 cgcgtgctgagttcgtacgagctcttngttcggcgtgggtgcctccagggtgaggga 134 ||||| | |||||||| ||||| || | |||| || |||||||||||||| ||||| Sbjct: 927 cgcgt-ccgagttcgt-tgagctgttcg-tcggtgtcggtgcctccagggtcaggga 980
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 54.0 bits (27), Expect = 1e-04 Identities = 49/55 (89%), Gaps = 1/55 (1%) Strand = Plus / Plus Query: 18 aagacgctgctcgcccgtgccgtcgncggggtaggccggggtgcccttcttctcc 72 ||||||||||| ||||| ||||||| |||| |||||||||||||||||| |||| Sbjct: 5154979 aagacgctgctggcccgggccgtcg-cgggtgaggccggggtgcccttctactcc 5155032
>ref|XM_319111.2| Anopheles gambiae str. PEST ENSANGP00000022333 (ENSANGG00000019844), partial mRNA Length = 1764 Score = 52.0 bits (26), Expect = 4e-04 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 13 cgggtaagacgctgctcgcccgtgccgtcgncggggtaggccggggtgcccttcttc 69 |||| ||||||||||| ||||||||||||| ||| | ||||||| ||||| |||||| Sbjct: 587 cgggaaagacgctgcttgcccgtgccgtcgccggag-aggccggtgtgccattcttc 642
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.10 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 18 aagacgctgctcgcccgtgccgtcgncggggtaggccggggtgcccttct 67 ||||||||||| || |||||||||| |||| |||||||||| ||||||| Sbjct: 5691552 aagacgctgctggcgcgtgccgtcg-cgggcgaggccggggtccccttct 5691600
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 44.1 bits (22), Expect = 0.10 Identities = 49/57 (85%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 13 cgggtaagacgctgctcgcccgtgccgtcgncggggtaggccggggtgcccttcttc 69 |||| ||||||||||| |||||||| || | ||| | |||| ||||||||||||||| Sbjct: 147532 cgggcaagacgctgctggcccgtgcggtggccggcg-aggcgggggtgcccttcttc 147587
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 0.40 Identities = 27/29 (93%) Strand = Plus / Minus Query: 44 cggggtaggccggggtgcccttcttctcc 72 ||||| |||| |||||||||||||||||| Sbjct: 382485 cgggggaggcgggggtgcccttcttctcc 382457
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 0.40 Identities = 27/29 (93%) Strand = Plus / Minus Query: 44 cggggtaggccggggtgcccttcttctcc 72 ||||| |||| |||||||||||||||||| Sbjct: 32137 cgggggaggcgggggtgcccttcttctcc 32109
>emb|BX012965.1|CNS08I61 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA2CB04 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 790 Score = 40.1 bits (20), Expect = 1.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 15 ggtaagacgctgctcgcccgtgccgtcg 42 ||||| |||||||| ||||||||||||| Sbjct: 758 ggtaaaacgctgctggcccgtgccgtcg 731
>emb|BX012964.1|CNS08I60 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA2CB04 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 891 Score = 40.1 bits (20), Expect = 1.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 15 ggtaagacgctgctcgcccgtgccgtcg 42 ||||| |||||||| ||||||||||||| Sbjct: 655 ggtaaaacgctgctggcccgtgccgtcg 682
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ggtaagacgctgctcgcccg 34 |||||||||||||||||||| Sbjct: 3644192 ggtaagacgctgctcgcccg 3644173
>ref|XM_321726.2| Anopheles gambiae str. PEST ENSANGP00000017473 (ENSANGG00000014984), partial mRNA Length = 1197 Score = 40.1 bits (20), Expect = 1.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 15 ggtaagacgctgctcgcccgtgccgtcg 42 ||||| |||||||| ||||||||||||| Sbjct: 562 ggtaaaacgctgctggcccgtgccgtcg 589
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 40.1 bits (20), Expect = 1.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 15 ggtaagacgctgctcgcccgtgcc 38 |||||||||||||| ||||||||| Sbjct: 1848908 ggtaagacgctgctggcccgtgcc 1848931
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 40.1 bits (20), Expect = 1.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 13 cgggtaagacgctgctcgcccgtgccgt 40 |||| ||||||||||| ||||||||||| Sbjct: 2055623 cgggcaagacgctgctggcccgtgccgt 2055650
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 38.2 bits (19), Expect = 6.3 Identities = 46/54 (85%), Gaps = 1/54 (1%) Strand = Plus / Plus Query: 15 ggtaagacgctgctcgcccgtgccgtcgncggggtaggccggggtgcccttctt 68 ||||| |||||||| ||||||||||| | |||| | ||||| ||||||||||| Sbjct: 1532642 ggtaaaacgctgctggcccgtgccgt-ggcgggtgaagccggcgtgcccttctt 1532694
>ref|XM_958261.1| Neurospora crassa OR74A 26S proteinase subunit protein (NCU05363.1) partial mRNA Length = 1170 Score = 38.2 bits (19), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 18 aagacgctgctcgcccgtgccgt 40 ||||| ||||||||||||||||| Sbjct: 535 aagaccctgctcgcccgtgccgt 557
>ref|XM_325217.1| Neurospora crassa OR74A probable 26S proteinase subunit protein [MIPS] (NCU05363.1) partial mRNA Length = 1170 Score = 38.2 bits (19), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 18 aagacgctgctcgcccgtgccgt 40 ||||| ||||||||||||||||| Sbjct: 535 aagaccctgctcgcccgtgccgt 557
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 38.2 bits (19), Expect = 6.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 109 ggcgtgggtgcctccaggg 127 ||||||||||||||||||| Sbjct: 1643066 ggcgtgggtgcctccaggg 1643048
>emb|AL451019.1|NCB9I2 Neurospora crassa DNA linkage group II BAC clone B9I2 Length = 72652 Score = 38.2 bits (19), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 18 aagacgctgctcgcccgtgccgt 40 ||||| ||||||||||||||||| Sbjct: 14197 aagaccctgctcgcccgtgccgt 14219
>emb|AL355928.2|NCB1D4 Neurospora crassa DNA linkage group II BAC clone B1D4 Length = 74417 Score = 38.2 bits (19), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 18 aagacgctgctcgcccgtgccgt 40 ||||| ||||||||||||||||| Sbjct: 27288 aagaccctgctcgcccgtgccgt 27310
>gb|AF334829.1| Homo sapiens mitochondrial RNA-processing endoribonuclease RNA (RMRP) gene, complete sequence Length = 187856 Score = 38.2 bits (19), Expect = 6.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 tgcccttcttctcctgcgc 77 ||||||||||||||||||| Sbjct: 175212 tgcccttcttctcctgcgc 175194
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 38.2 bits (19), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 18 aagacgctgctcgcccgtgccgt 40 ||||||||||| ||||||||||| Sbjct: 2882917 aagacgctgctggcccgtgccgt 2882895
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 38.2 bits (19), Expect = 6.3 Identities = 30/34 (88%) Strand = Plus / Plus Query: 13 cgggtaagacgctgctcgcccgtgccgtcgncgg 46 |||||||||||||||| ||||| ||| ||| ||| Sbjct: 1288335 cgggtaagacgctgctggcccgcgccatcgccgg 1288368
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 38.2 bits (19), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 50 aggccggggtgcccttcttctcc 72 |||| |||||||||||||||||| Sbjct: 1370611 aggcaggggtgcccttcttctcc 1370633
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 38.2 bits (19), Expect = 6.3 Identities = 30/34 (88%) Strand = Plus / Plus Query: 13 cgggtaagacgctgctcgcccgtgccgtcgncgg 46 |||||||||||||| |||| ||||| |||| ||| Sbjct: 2080278 cgggtaagacgctgatcgcgcgtgcggtcgccgg 2080311 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 632,239 Number of Sequences: 3902068 Number of extensions: 632239 Number of successful extensions: 42981 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 42387 Number of HSP's gapped (non-prelim): 589 length of query: 134 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 113 effective length of database: 17,151,101,840 effective search space: 1938074507920 effective search space used: 1938074507920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)