>gb|BT009457.1| Triticum aestivum clone wlp1c.pk007.f6:fis, full insert mRNA
           sequence
          Length = 1556

 Score = 97.6 bits (49), Expect = 8e-18
 Identities = 90/99 (90%), Gaps = 4/99 (4%)
 Strand = Plus / Plus

                                                                       
Query: 36  gccgtcgncggggtaggccggggtgcccttcttctcctgcgccgcgtgctgagttcgtac 95
           ||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 151 gccgtcgccgggg-aggccggggtgcccttcttctcctgcgccgcgt-ctgagttcgt-c 207

                                                  
Query: 96  gagctcttngttcggcgtgggtgcctccagggtgaggga 134
           |||||||| | ||||||| || || ||||||||||||||
Sbjct: 208 gagctcttcg-tcggcgtcggcgcgtccagggtgaggga 245

>gb|AY103957.1| Zea mays PCO116832 mRNA sequence
          Length = 1820

 Score = 77.8 bits (39), Expect = 7e-12
 Identities = 86/97 (88%), Gaps = 4/97 (4%)
 Strand = Plus / Plus

                                                                       
Query: 33  cgtgccgtcgncggggtaggccggggtgcccttcttctcctgcgccgcgtgctgagttcg 92
           ||||||||||  |||| |||||||||||||||||||||||||||| || | |||||||||
Sbjct: 235 cgtgccgtcgctgggg-aggccggggtgcccttcttctcctgcgctgcct-ctgagttcg 292

                                                
Query: 93  tacgagctcttngttcggcgtgggtgcctccagggtg 129
           | ||||||||| | |||| || |||||||||||||||
Sbjct: 293 t-cgagctcttcg-tcggtgtcggtgcctccagggtg 327

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 100/117 (85%), Gaps = 4/117 (3%)
 Strand = Plus / Minus

                                                                            
Query: 18       aagacgctgctcgcccgtgccgtcgncggggtaggccggggtgcccttcttctcctgcgc 77
                ||||| ||||| || |||||||||| ||||| ||||||| ||||| ||||||||||||||
Sbjct: 30361221 aagacactgctggcgcgtgccgtcgccgggg-aggccggagtgccattcttctcctgcgc 30361163

                                                                         
Query: 78       cgcgtgctgagttcgtacgagctcttngttcggcgtgggtgcctccagggtgaggga 134
                ||||| | ||||||||  ||||| || | |||| || |||||||||||||| |||||
Sbjct: 30361162 cgcgt-ccgagttcgt-tgagctgttcg-tcggtgtcggtgcctccagggtcaggga 30361109

>dbj|AP003685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0548E04
          Length = 138037

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 100/117 (85%), Gaps = 4/117 (3%)
 Strand = Plus / Minus

                                                                          
Query: 18     aagacgctgctcgcccgtgccgtcgncggggtaggccggggtgcccttcttctcctgcgc 77
              ||||| ||||| || |||||||||| ||||| ||||||| ||||| ||||||||||||||
Sbjct: 107816 aagacactgctggcgcgtgccgtcgccgggg-aggccggagtgccattcttctcctgcgc 107758

                                                                       
Query: 78     cgcgtgctgagttcgtacgagctcttngttcggcgtgggtgcctccagggtgaggga 134
              ||||| | ||||||||  ||||| || | |||| || |||||||||||||| |||||
Sbjct: 107757 cgcgt-ccgagttcgt-tgagctgttcg-tcggtgtcggtgcctccagggtcaggga 107704

>dbj|AK065019.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F19, full
           insert sequence
          Length = 2378

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 100/117 (85%), Gaps = 4/117 (3%)
 Strand = Plus / Plus

                                                                       
Query: 18  aagacgctgctcgcccgtgccgtcgncggggtaggccggggtgcccttcttctcctgcgc 77
           ||||| ||||| || |||||||||| ||||| ||||||| ||||| ||||||||||||||
Sbjct: 868 aagacactgctggcgcgtgccgtcgccgggg-aggccggagtgccattcttctcctgcgc 926

                                                                    
Query: 78  cgcgtgctgagttcgtacgagctcttngttcggcgtgggtgcctccagggtgaggga 134
           ||||| | ||||||||  ||||| || | |||| || |||||||||||||| |||||
Sbjct: 927 cgcgt-ccgagttcgt-tgagctgttcg-tcggtgtcggtgcctccagggtcaggga 980

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 49/55 (89%), Gaps = 1/55 (1%)
 Strand = Plus / Plus

                                                                      
Query: 18      aagacgctgctcgcccgtgccgtcgncggggtaggccggggtgcccttcttctcc 72
               ||||||||||| ||||| ||||||| ||||  |||||||||||||||||| ||||
Sbjct: 5154979 aagacgctgctggcccgggccgtcg-cgggtgaggccggggtgcccttctactcc 5155032

>ref|XM_319111.2| Anopheles gambiae str. PEST ENSANGP00000022333
           (ENSANGG00000019844), partial mRNA
          Length = 1764

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 50/57 (87%), Gaps = 1/57 (1%)
 Strand = Plus / Plus

                                                                    
Query: 13  cgggtaagacgctgctcgcccgtgccgtcgncggggtaggccggggtgcccttcttc 69
           |||| ||||||||||| ||||||||||||| ||| | ||||||| ||||| ||||||
Sbjct: 587 cgggaaagacgctgcttgcccgtgccgtcgccggag-aggccggtgtgccattcttc 642

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.10
 Identities = 44/50 (88%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                                 
Query: 18      aagacgctgctcgcccgtgccgtcgncggggtaggccggggtgcccttct 67
               ||||||||||| || |||||||||| ||||  |||||||||| |||||||
Sbjct: 5691552 aagacgctgctggcgcgtgccgtcg-cgggcgaggccggggtccccttct 5691600

>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 44.1 bits (22), Expect = 0.10
 Identities = 49/57 (85%), Gaps = 1/57 (1%)
 Strand = Plus / Plus

                                                                       
Query: 13     cgggtaagacgctgctcgcccgtgccgtcgncggggtaggccggggtgcccttcttc 69
              |||| ||||||||||| |||||||| || | ||| | |||| |||||||||||||||
Sbjct: 147532 cgggcaagacgctgctggcccgtgcggtggccggcg-aggcgggggtgcccttcttc 147587

>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 44     cggggtaggccggggtgcccttcttctcc 72
              ||||| |||| ||||||||||||||||||
Sbjct: 382485 cgggggaggcgggggtgcccttcttctcc 382457

>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 44    cggggtaggccggggtgcccttcttctcc 72
             ||||| |||| ||||||||||||||||||
Sbjct: 32137 cgggggaggcgggggtgcccttcttctcc 32109

>emb|BX012965.1|CNS08I61 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA2CB04 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 790

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 15  ggtaagacgctgctcgcccgtgccgtcg 42
           ||||| |||||||| |||||||||||||
Sbjct: 758 ggtaaaacgctgctggcccgtgccgtcg 731

>emb|BX012964.1|CNS08I60 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA2CB04 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 891

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 15  ggtaagacgctgctcgcccgtgccgtcg 42
           ||||| |||||||| |||||||||||||
Sbjct: 655 ggtaaaacgctgctggcccgtgccgtcg 682

>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 15      ggtaagacgctgctcgcccg 34
               ||||||||||||||||||||
Sbjct: 3644192 ggtaagacgctgctcgcccg 3644173

>ref|XM_321726.2| Anopheles gambiae str. PEST ENSANGP00000017473
           (ENSANGG00000014984), partial mRNA
          Length = 1197

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 15  ggtaagacgctgctcgcccgtgccgtcg 42
           ||||| |||||||| |||||||||||||
Sbjct: 562 ggtaaaacgctgctggcccgtgccgtcg 589

>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 15      ggtaagacgctgctcgcccgtgcc 38
               |||||||||||||| |||||||||
Sbjct: 1848908 ggtaagacgctgctggcccgtgcc 1848931

>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 13      cgggtaagacgctgctcgcccgtgccgt 40
               |||| ||||||||||| |||||||||||
Sbjct: 2055623 cgggcaagacgctgctggcccgtgccgt 2055650

>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 46/54 (85%), Gaps = 1/54 (1%)
 Strand = Plus / Plus

                                                                     
Query: 15      ggtaagacgctgctcgcccgtgccgtcgncggggtaggccggggtgcccttctt 68
               ||||| |||||||| ||||||||||| | ||||  | ||||| |||||||||||
Sbjct: 1532642 ggtaaaacgctgctggcccgtgccgt-ggcgggtgaagccggcgtgcccttctt 1532694

>ref|XM_958261.1| Neurospora crassa OR74A 26S proteinase subunit protein (NCU05363.1)
           partial mRNA
          Length = 1170

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 18  aagacgctgctcgcccgtgccgt 40
           ||||| |||||||||||||||||
Sbjct: 535 aagaccctgctcgcccgtgccgt 557

>ref|XM_325217.1| Neurospora crassa OR74A probable 26S proteinase subunit protein
           [MIPS] (NCU05363.1) partial mRNA
          Length = 1170

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 18  aagacgctgctcgcccgtgccgt 40
           ||||| |||||||||||||||||
Sbjct: 535 aagaccctgctcgcccgtgccgt 557

>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 109     ggcgtgggtgcctccaggg 127
               |||||||||||||||||||
Sbjct: 1643066 ggcgtgggtgcctccaggg 1643048

>emb|AL451019.1|NCB9I2 Neurospora crassa DNA linkage group II BAC clone B9I2
          Length = 72652

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 18    aagacgctgctcgcccgtgccgt 40
             ||||| |||||||||||||||||
Sbjct: 14197 aagaccctgctcgcccgtgccgt 14219

>emb|AL355928.2|NCB1D4 Neurospora crassa DNA linkage group II BAC clone B1D4
          Length = 74417

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 18    aagacgctgctcgcccgtgccgt 40
             ||||| |||||||||||||||||
Sbjct: 27288 aagaccctgctcgcccgtgccgt 27310

>gb|AF334829.1| Homo sapiens mitochondrial RNA-processing endoribonuclease RNA (RMRP)
              gene, complete sequence
          Length = 187856

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 59     tgcccttcttctcctgcgc 77
              |||||||||||||||||||
Sbjct: 175212 tgcccttcttctcctgcgc 175194

>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 18      aagacgctgctcgcccgtgccgt 40
               ||||||||||| |||||||||||
Sbjct: 2882917 aagacgctgctggcccgtgccgt 2882895

>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 30/34 (88%)
 Strand = Plus / Plus

                                                 
Query: 13      cgggtaagacgctgctcgcccgtgccgtcgncgg 46
               |||||||||||||||| ||||| ||| ||| |||
Sbjct: 1288335 cgggtaagacgctgctggcccgcgccatcgccgg 1288368

>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 50      aggccggggtgcccttcttctcc 72
               |||| ||||||||||||||||||
Sbjct: 1370611 aggcaggggtgcccttcttctcc 1370633

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 30/34 (88%)
 Strand = Plus / Plus

                                                 
Query: 13      cgggtaagacgctgctcgcccgtgccgtcgncgg 46
               |||||||||||||| |||| ||||| |||| |||
Sbjct: 2080278 cgggtaagacgctgatcgcgcgtgcggtcgccgg 2080311


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 632,239
Number of Sequences: 3902068
Number of extensions: 632239
Number of successful extensions: 42981
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 42387
Number of HSP's gapped (non-prelim): 589
length of query: 134
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 113
effective length of database: 17,151,101,840
effective search space: 1938074507920
effective search space used: 1938074507920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)