Clone Name | basd2e11 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 101 bits (51), Expect = 2e-18 Identities = 75/83 (90%) Strand = Plus / Minus Query: 352 tccagcttgagcgagttcaaggccattgccgcagacgcttcggtcttctcatttggagac 411 |||||| |||||||||||||||| ||||| |||||||||||||||||||| || ||||| Sbjct: 12366342 tccagcatgagcgagttcaaggcaattgctgcagacgcttcggtcttctcgttcggagat 12366283 Query: 412 gaagatgactacgaaagcgaata 434 ||||| ||||| ||||||||||| Sbjct: 12366282 gaagacgactatgaaagcgaata 12366260 Score = 89.7 bits (45), Expect = 9e-15 Identities = 72/81 (88%) Strand = Plus / Minus Query: 48 gtccaacaaagaaactggaagtgatgataaggatgatgttttttctgacaatgaagcaga 107 ||||||||| ||| ||| ||| ||||||||||||| || || ||||||| ||||||||| Sbjct: 12366652 gtccaacaaggaatctgcaaggaatgataaggatgacgtcttctctgacagtgaagcaga 12366593 Query: 108 agatggatcatccaagggcag 128 ||||||||||||||||||||| Sbjct: 12366592 agatggatcatccaagggcag 12366572 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Minus Query: 287 ctctcaaaactgaagctagcagcaagagcgactccaccaaagcac 331 ||||||||| || || ||||||||||||| |||||||| ||||| Sbjct: 12366413 ctctcaaaagtggagttagcagcaagagcagctccaccacagcac 12366369
>dbj|AK100320.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079D17, full insert sequence Length = 2438 Score = 101 bits (51), Expect = 2e-18 Identities = 75/83 (90%) Strand = Plus / Plus Query: 352 tccagcttgagcgagttcaaggccattgccgcagacgcttcggtcttctcatttggagac 411 |||||| |||||||||||||||| ||||| |||||||||||||||||||| || ||||| Sbjct: 2104 tccagcatgagcgagttcaaggcaattgctgcagacgcttcggtcttctcgttcggagat 2163 Query: 412 gaagatgactacgaaagcgaata 434 ||||| ||||| ||||||||||| Sbjct: 2164 gaagacgactatgaaagcgaata 2186 Score = 89.7 bits (45), Expect = 9e-15 Identities = 72/81 (88%) Strand = Plus / Plus Query: 48 gtccaacaaagaaactggaagtgatgataaggatgatgttttttctgacaatgaagcaga 107 ||||||||| ||| ||| ||| ||||||||||||| || || ||||||| ||||||||| Sbjct: 1794 gtccaacaaggaatctgcaaggaatgataaggatgacgtcttctctgacagtgaagcaga 1853 Query: 108 agatggatcatccaagggcag 128 ||||||||||||||||||||| Sbjct: 1854 agatggatcatccaagggcag 1874 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Plus Query: 287 ctctcaaaactgaagctagcagcaagagcgactccaccaaagcac 331 ||||||||| || || ||||||||||||| |||||||| ||||| Sbjct: 2033 ctctcaaaagtggagttagcagcaagagcagctccaccacagcac 2077
>dbj|AK062213.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A07, full insert sequence Length = 1356 Score = 101 bits (51), Expect = 2e-18 Identities = 75/83 (90%) Strand = Plus / Plus Query: 352 tccagcttgagcgagttcaaggccattgccgcagacgcttcggtcttctcatttggagac 411 |||||| |||||||||||||||| ||||| |||||||||||||||||||| || ||||| Sbjct: 1019 tccagcatgagcgagttcaaggcaattgctgcagacgcttcggtcttctcgttcggagat 1078 Query: 412 gaagatgactacgaaagcgaata 434 ||||| ||||| ||||||||||| Sbjct: 1079 gaagacgactatgaaagcgaata 1101 Score = 89.7 bits (45), Expect = 9e-15 Identities = 72/81 (88%) Strand = Plus / Plus Query: 48 gtccaacaaagaaactggaagtgatgataaggatgatgttttttctgacaatgaagcaga 107 ||||||||| ||| ||| ||| ||||||||||||| || || ||||||| ||||||||| Sbjct: 709 gtccaacaaggaatctgcaaggaatgataaggatgacgtcttctctgacagtgaagcaga 768 Query: 108 agatggatcatccaagggcag 128 ||||||||||||||||||||| Sbjct: 769 agatggatcatccaagggcag 789 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Plus Query: 287 ctctcaaaactgaagctagcagcaagagcgactccaccaaagcac 331 ||||||||| || || ||||||||||||| |||||||| ||||| Sbjct: 948 ctctcaaaagtggagttagcagcaagagcagctccaccacagcac 992
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 101 bits (51), Expect = 2e-18 Identities = 75/83 (90%) Strand = Plus / Minus Query: 352 tccagcttgagcgagttcaaggccattgccgcagacgcttcggtcttctcatttggagac 411 |||||| |||||||||||||||| ||||| |||||||||||||||||||| || ||||| Sbjct: 12320712 tccagcatgagcgagttcaaggcaattgctgcagacgcttcggtcttctcgttcggagat 12320653 Query: 412 gaagatgactacgaaagcgaata 434 ||||| ||||| ||||||||||| Sbjct: 12320652 gaagacgactatgaaagcgaata 12320630 Score = 89.7 bits (45), Expect = 9e-15 Identities = 72/81 (88%) Strand = Plus / Minus Query: 48 gtccaacaaagaaactggaagtgatgataaggatgatgttttttctgacaatgaagcaga 107 ||||||||| ||| ||| ||| ||||||||||||| || || ||||||| ||||||||| Sbjct: 12321022 gtccaacaaggaatctgcaaggaatgataaggatgacgtcttctctgacagtgaagcaga 12320963 Query: 108 agatggatcatccaagggcag 128 ||||||||||||||||||||| Sbjct: 12320962 agatggatcatccaagggcag 12320942 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Minus Query: 287 ctctcaaaactgaagctagcagcaagagcgactccaccaaagcac 331 ||||||||| || || ||||||||||||| |||||||| ||||| Sbjct: 12320783 ctctcaaaagtggagttagcagcaagagcagctccaccacagcac 12320739
>emb|AL713942.4|CNS07YPB Oryza sativa chromosome 12, . BAC OSJNBa0009F05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 163702 Score = 101 bits (51), Expect = 2e-18 Identities = 75/83 (90%) Strand = Plus / Minus Query: 352 tccagcttgagcgagttcaaggccattgccgcagacgcttcggtcttctcatttggagac 411 |||||| |||||||||||||||| ||||| |||||||||||||||||||| || ||||| Sbjct: 80707 tccagcatgagcgagttcaaggcaattgctgcagacgcttcggtcttctcgttcggagat 80648 Query: 412 gaagatgactacgaaagcgaata 434 ||||| ||||| ||||||||||| Sbjct: 80647 gaagacgactatgaaagcgaata 80625 Score = 89.7 bits (45), Expect = 9e-15 Identities = 72/81 (88%) Strand = Plus / Minus Query: 48 gtccaacaaagaaactggaagtgatgataaggatgatgttttttctgacaatgaagcaga 107 ||||||||| ||| ||| ||| ||||||||||||| || || ||||||| ||||||||| Sbjct: 81017 gtccaacaaggaatctgcaaggaatgataaggatgacgtcttctctgacagtgaagcaga 80958 Query: 108 agatggatcatccaagggcag 128 ||||||||||||||||||||| Sbjct: 80957 agatggatcatccaagggcag 80937 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Minus Query: 287 ctctcaaaactgaagctagcagcaagagcgactccaccaaagcac 331 ||||||||| || || ||||||||||||| |||||||| ||||| Sbjct: 80778 ctctcaaaagtggagttagcagcaagagcagctccaccacagcac 80734
>gb|AY112473.1| Zea mays CL234_1 mRNA sequence Length = 1656 Score = 71.9 bits (36), Expect = 2e-09 Identities = 131/162 (80%), Gaps = 3/162 (1%) Strand = Plus / Plus Query: 270 ggcacctgacggtatctctctcaaaactgaagctagcagcaagagcgactccaccaaagc 329 ||||||||| |||| |||||||||||||||| ||||||||| | |||||||| ||| Sbjct: 1240 ggcacctgatggtacatctctcaaaactgaagtcagcagcaaggccagctccaccacagc 1299 Query: 330 acagcctcct---gctatggaatcatccagcttgagcgagttcaaggccattgccgcaga 386 || |||||| ||| || || |||||| ||||||| |||||||| ||||||||||| Sbjct: 1300 accacctcctccagctgctgactcttccagcatgagcgaattcaaggcgattgccgcaga 1359 Query: 387 cgcttcggtcttctcatttggagacgaagatgactacgaaag 428 || ||||| ||||| || ||||| |||||||| || ||||| Sbjct: 1360 tgcctcggtgttctcgttcggagatgaagatgattatgaaag 1401 Score = 40.1 bits (20), Expect = 7.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 33 tgctgcacctgcagagtccaacaaagaaactggaag 68 ||||||||||| ||| |||||||| | ||||||||| Sbjct: 997 tgctgcacctgaagaatccaacaagggaactggaag 1032
>gb|AC113508.14| Mus musculus chromosome 13, clone RP23-376D8, complete sequence Length = 176600 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 gcagcaatgccaaggacagca 31 ||||||||||||||||||||| Sbjct: 109078 gcagcaatgccaaggacagca 109058
>ref|XM_542713.2| PREDICTED: Canis familiaris similar to Golgi reassembly stacking protein 1, transcript variant 1 (LOC485594), mRNA Length = 2956 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 133 gaggacgtctccagcagtggt 153 ||||||||||||||||||||| Sbjct: 1045 gaggacgtctccagcagtggt 1065
>ref|XM_844821.1| PREDICTED: Canis familiaris similar to Golgi reassembly stacking protein 1, transcript variant 2 (LOC485594), mRNA Length = 3152 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 133 gaggacgtctccagcagtggt 153 ||||||||||||||||||||| Sbjct: 1045 gaggacgtctccagcagtggt 1065
>emb|CR318652.16| Zebrafish DNA sequence from clone CH211-128O18 in linkage group 11, complete sequence Length = 179522 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 344 tggaatcatccagcttgagcg 364 ||||||||||||||||||||| Sbjct: 172700 tggaatcatccagcttgagcg 172680
>gb|AC015864.5| Homo sapiens chromosome 18, clone RP11-54A1, complete sequence Length = 177410 Score = 42.1 bits (21), Expect = 1.9 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Plus Query: 102 agcagaagatggatcatccaagggcagga 130 ||||||||||||| ||||||||||||||| Sbjct: 146223 agcagaagatgga-catccaagggcagga 146250
>ref|XM_690321.1| PREDICTED: Danio rerio similar to genetic suppressor element 1 (LOC567033), mRNA Length = 5017 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 344 tggaatcatccagcttgagcg 364 ||||||||||||||||||||| Sbjct: 2722 tggaatcatccagcttgagcg 2702
>ref|XM_688232.1| PREDICTED: Danio rerio similar to genetic suppressor element 1 (LOC564914), mRNA Length = 2424 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 344 tggaatcatccagcttgagcg 364 ||||||||||||||||||||| Sbjct: 2205 tggaatcatccagcttgagcg 2185
>emb|BX548023.3| Zebrafish DNA sequence from clone DKEY-265O13 in linkage group 18, complete sequence Length = 151449 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 344 tggaatcatccagcttgagcg 364 ||||||||||||||||||||| Sbjct: 94116 tggaatcatccagcttgagcg 94096
>dbj|AP001169.1| Homo sapiens genomic DNA, chromosome 18q21, deleted region in human lung cancer, complete sequence Length = 146736 Score = 42.1 bits (21), Expect = 1.9 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Minus Query: 102 agcagaagatggatcatccaagggcagga 130 ||||||||||||| ||||||||||||||| Sbjct: 46823 agcagaagatgga-catccaagggcagga 46796
>gb|AC119905.11| Mus musculus chromosome 17, clone RP24-238N14, complete sequence Length = 179042 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 aagcatagttgggaagaatt 535 |||||||||||||||||||| Sbjct: 6525 aagcatagttgggaagaatt 6506
>ref|NM_020964.2| Homo sapiens KIAA1632 (KIAA1632), mRNA Length = 12715 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 caatgctgcacctgcagagt 49 |||||||||||||||||||| Sbjct: 5308 caatgctgcacctgcagagt 5327
>gb|AC123699.10| Mus musculus chromosome 5, clone RP23-333M22, complete sequence Length = 167971 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 ccaagggcaggaaggaggac 138 |||||||||||||||||||| Sbjct: 64964 ccaagggcaggaaggaggac 64945
>gb|AC155823.8| Mus musculus BAC clone RP23-348C5 from chromosome 8, complete sequence Length = 219597 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agcagaagatggatcatcca 121 |||||||||||||||||||| Sbjct: 165421 agcagaagatggatcatcca 165402
>emb|BX927371.12| Zebrafish DNA sequence from clone DKEY-1C17 in linkage group 7, complete sequence Length = 154034 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gaaacaagtgttgcacaaca 203 |||||||||||||||||||| Sbjct: 94585 gaaacaagtgttgcacaaca 94604
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome Length = 2575032 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 ctttgcttttgcaggtgttt 459 |||||||||||||||||||| Sbjct: 1476417 ctttgcttttgcaggtgttt 1476398
>gb|AY033089.1| Enterococcus casseliflavus vancomycin resistance gene cluster, partial sequence Length = 4611 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 tggagcaaatagagccaaag 178 |||||||||||||||||||| Sbjct: 1438 tggagcaaatagagccaaag 1419
>emb|X59720.2|SCCHRIII S.cerevisiae chromosome III complete DNA sequence Length = 316613 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 atgataaggatgatgttttt 90 |||||||||||||||||||| Sbjct: 230957 atgataaggatgatgttttt 230938
>gb|AC087685.9| Homo sapiens chromosome 18, clone RP11-618K16, complete sequence Length = 155807 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 caatgctgcacctgcagagt 49 |||||||||||||||||||| Sbjct: 2635 caatgctgcacctgcagagt 2654
>emb|X12542.1|SCRAD18A S.cerevisiae RAD18 gene Length = 2300 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 atgataaggatgatgttttt 90 |||||||||||||||||||| Sbjct: 127 atgataaggatgatgttttt 108
>emb|X12588.1|SCRAD18 Yeast RAD18 gene Length = 2471 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 atgataaggatgatgttttt 90 |||||||||||||||||||| Sbjct: 126 atgataaggatgatgttttt 107
>emb|CR352305.6| Zebrafish DNA sequence from clone CH211-95N4 in linkage group 17, complete sequence Length = 155030 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 529 aagaattgatttatctttgc 548 |||||||||||||||||||| Sbjct: 7917 aagaattgatttatctttgc 7936
>gb|AC154750.2| Mus musculus BAC clone RP24-399I16 from chromosome 17, complete sequence Length = 128778 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 aagcatagttgggaagaatt 535 |||||||||||||||||||| Sbjct: 107774 aagcatagttgggaagaatt 107755
>dbj|AK023817.1| Homo sapiens cDNA FLJ13755 fis, clone PLACE3000363 Length = 4348 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 caatgctgcacctgcagagt 49 |||||||||||||||||||| Sbjct: 1987 caatgctgcacctgcagagt 2006
>dbj|AB225133.1| Aspergillus oryzae cDNA, contig sequence: AoEST1984 Length = 936 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 aatgctgcacctgcagagtc 50 |||||||||||||||||||| Sbjct: 359 aatgctgcacctgcagagtc 378
>gb|AC090355.9| Homo sapiens chromosome 18, clone RP11-745C22, complete sequence Length = 186783 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 caatgctgcacctgcagagt 49 |||||||||||||||||||| Sbjct: 53893 caatgctgcacctgcagagt 53874
>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 Length = 2661830 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 aatgctgcacctgcagagtc 50 |||||||||||||||||||| Sbjct: 819744 aatgctgcacctgcagagtc 819763
>gb|AC107383.3| Homo sapiens BAC clone RP11-125C20 from 4, complete sequence Length = 173808 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 518 gcatagttgggaagaattgattta 541 |||||| ||||||||||||||||| Sbjct: 168436 gcataggtgggaagaattgattta 168459
>gb|AC100828.2| Homo sapiens chromosome 15, clone RP11-184D12, complete sequence Length = 175123 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 cttttgcaggtgtttgattt 464 |||||||||||||||||||| Sbjct: 120928 cttttgcaggtgtttgattt 120947
>emb|BX936295.3| Mouse DNA sequence from clone RP23-256P1 on chromosome 2, complete sequence Length = 56898 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 86 ttttttctgacaatgaagcagaagatgg 113 ||||||||||||||||| | |||||||| Sbjct: 28239 ttttttctgacaatgaatctgaagatgg 28212
>gb|AY033764.1| Enterococcus flavescens vanC-3 vancomycin resistance gene cluster, complete sequence Length = 5662 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 tggagcaaatagagccaaag 178 |||||||||||||||||||| Sbjct: 2494 tggagcaaatagagccaaag 2475
>gb|AC138356.3| Homo sapiens chromosome 8, clone RP11-863K10, complete sequence Length = 190274 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 aagggcaggaaggaggacgt 140 |||||||||||||||||||| Sbjct: 5129 aagggcaggaaggaggacgt 5148
>gb|AC130304.12| Homo sapiens chromosome 8, clone RP11-205M5, complete sequence Length = 161953 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 aagggcaggaaggaggacgt 140 |||||||||||||||||||| Sbjct: 101353 aagggcaggaaggaggacgt 101372
>gb|M36405.1|YSCRAD18A S.cerevisiae DNA repair protein (RAD18) gene, complete cds Length = 2300 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 atgataaggatgatgttttt 90 |||||||||||||||||||| Sbjct: 127 atgataaggatgatgttttt 108
>gb|AC169384.2| Mus musculus chromosome 5, clone RP23-231C16, complete sequence Length = 204569 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 ccaagggcaggaaggaggac 138 |||||||||||||||||||| Sbjct: 198588 ccaagggcaggaaggaggac 198569
>emb|AL928637.7| Zebrafish DNA sequence from clone CH211-227I6, complete sequence Length = 163121 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gaaacaagtgttgcacaaca 203 |||||||||||||||||||| Sbjct: 105763 gaaacaagtgttgcacaaca 105782
>emb|AL831723.8| Mouse DNA sequence from clone RP23-100C7 on chromosome 4, complete sequence Length = 171424 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 gcagagtccaacaaagaaac 62 |||||||||||||||||||| Sbjct: 26950 gcagagtccaacaaagaaac 26969
>gb|L08252.1|YSCHCM1PA Saccharomyces cerevisiae Hcm1p protein gene, complete cds Length = 1965 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 atgataaggatgatgttttt 90 |||||||||||||||||||| Sbjct: 1771 atgataaggatgatgttttt 1752
>dbj|AP000501.1| Homo sapiens genomic DNA, chromosome 8p11.2, clone:91h23 to 9-41 Length = 178348 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 aagggcaggaaggaggacgt 140 |||||||||||||||||||| Sbjct: 131814 aagggcaggaaggaggacgt 131833 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,615,475 Number of Sequences: 3902068 Number of extensions: 5615475 Number of successful extensions: 111326 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 111153 Number of HSP's gapped (non-prelim): 175 length of query: 562 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 539 effective length of database: 17,143,297,704 effective search space: 9240237462456 effective search space used: 9240237462456 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)