Clone Name | basd2e08 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_466278.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1893 Score = 46.1 bits (23), Expect = 0.036 Identities = 32/35 (91%) Strand = Plus / Plus Query: 97 tttgattcaaattcagacagtggaagggatgacaa 131 |||| |||||||||||||||||||| |||| |||| Sbjct: 1270 tttggttcaaattcagacagtggaatggatcacaa 1304
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 46.1 bits (23), Expect = 0.036 Identities = 32/35 (91%) Strand = Plus / Minus Query: 97 tttgattcaaattcagacagtggaagggatgacaa 131 |||| |||||||||||||||||||| |||| |||| Sbjct: 21440411 tttggttcaaattcagacagtggaatggatcacaa 21440377
>dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0020C11 Length = 163328 Score = 46.1 bits (23), Expect = 0.036 Identities = 32/35 (91%) Strand = Plus / Minus Query: 97 tttgattcaaattcagacagtggaagggatgacaa 131 |||| |||||||||||||||||||| |||| |||| Sbjct: 35338 tttggttcaaattcagacagtggaatggatcacaa 35304
>dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1712_E04 Length = 110098 Score = 46.1 bits (23), Expect = 0.036 Identities = 32/35 (91%) Strand = Plus / Minus Query: 97 tttgattcaaattcagacagtggaagggatgacaa 131 |||| |||||||||||||||||||| |||| |||| Sbjct: 100364 tttggttcaaattcagacagtggaatggatcacaa 100330
>gb|BC060494.1| Xenopus laevis hypothetical protein MGC68827, mRNA (cDNA clone MGC:68827 IMAGE:4633786), complete cds Length = 3061 Score = 44.1 bits (22), Expect = 0.14 Identities = 22/22 (100%) Strand = Plus / Plus Query: 103 tcaaattcagacagtggaaggg 124 |||||||||||||||||||||| Sbjct: 602 tcaaattcagacagtggaaggg 623
>gb|AY510087.1| Staphylococcus capitis serine-aspartate repeat family protein (sdrZL) gene, complete cds Length = 1698 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 tgattcaaattcagacagtg 118 |||||||||||||||||||| Sbjct: 471 tgattcaaattcagacagtg 490
>emb|AL354981.41| Human DNA sequence from clone RP11-696J10 on chromosome 9 Contains part of the ASTN2 gene for astrotactin 2 (KIAA0634), complete sequence Length = 117488 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 gattcaaattcagacagtgg 119 |||||||||||||||||||| Sbjct: 57756 gattcaaattcagacagtgg 57775
>emb|CR380958.1| Candida glabrata strain CBS138 chromosome L complete sequence Length = 1440588 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ttcaaattcagacagtggaa 121 |||||||||||||||||||| Sbjct: 1184743 ttcaaattcagacagtggaa 1184724
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 tggcaatgtggtaagaaagg 79 |||||||||||||||||||| Sbjct: 2753003 tggcaatgtggtaagaaagg 2752984
>gb|AC121879.3| Mus musculus chromosome 19 clone RP24-132B24, complete sequence Length = 134662 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 130 aaattggaacccaaatgga 148 ||||||||||||||||||| Sbjct: 43959 aaattggaacccaaatgga 43941
>ref|XM_630368.1| Dictyostelium discoideum hypothetical protein (DDB0189219), partial mRNA Length = 2445 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 gttggtggtgaatttgatt 103 ||||||||||||||||||| Sbjct: 2033 gttggtggtgaatttgatt 2015
>gb|AC125200.4| Mus musculus chromosome UNKNOWN clone RP23-261P9, complete sequence Length = 215697 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 attcagacagtggaaggga 125 ||||||||||||||||||| Sbjct: 132524 attcagacagtggaaggga 132542
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 gttcgcgttggtggtgaat 97 ||||||||||||||||||| Sbjct: 1758452 gttcgcgttggtggtgaat 1758434
>ref|XM_709230.1| Candida albicans SC5314 putative plasma membrane t-SNARE (CaO19.117), mRNA Length = 1593 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 95 aatttgattcaaattcaga 113 ||||||||||||||||||| Sbjct: 1440 aatttgattcaaattcaga 1422
>ref|XM_708955.1| Candida albicans SC5314 putative plasma membrane t-SNARE (CaO19.7764), mRNA Length = 1581 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 95 aatttgattcaaattcaga 113 ||||||||||||||||||| Sbjct: 1428 aatttgattcaaattcaga 1410
>gb|AC139553.5| Mus musculus chromosome 19, clone RP24-386E18, complete sequence Length = 168091 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 130 aaattggaacccaaatgga 148 ||||||||||||||||||| Sbjct: 135764 aaattggaacccaaatgga 135746
>gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence Length = 250029 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 120 aagggatgacaaattggaa 138 ||||||||||||||||||| Sbjct: 89101 aagggatgacaaattggaa 89119
>emb|AL136970.8| Human DNA sequence from clone RP1-238D4 on chromosome 6 Contains part of the ME1 gene for malic enzyme 1 (NADP-dependent, cytosolic), complete sequence Length = 43983 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 aggaatatagaggacacag 19 ||||||||||||||||||| Sbjct: 16591 aggaatatagaggacacag 16609
>emb|BX842577.1| Mycobacterium tuberculosis H37Rv complete genome; segment 6/13 Length = 347496 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 gttcgcgttggtggtgaat 97 ||||||||||||||||||| Sbjct: 27041 gttcgcgttggtggtgaat 27023
>gb|AC158350.7| Mus musculus chromosome 8, clone RP24-250A3, complete sequence Length = 174965 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 99 tgattcaaattcagacagt 117 ||||||||||||||||||| Sbjct: 24489 tgattcaaattcagacagt 24471
>emb|BX248339.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 6/14 Length = 300050 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 gttcgcgttggtggtgaat 97 ||||||||||||||||||| Sbjct: 128313 gttcgcgttggtggtgaat 128295
>emb|AL591136.20| Mouse DNA sequence from clone RP23-273P3 on chromosome 11 Contains the 5' end of a novel gene, two novel genes, the Taok1 gene for TAO kinase 1, a eukaryotic translation initiation factor 2 subunit 1 alpha (Eif2s1) pseudogene, a ribosomal protein S2 (Rps2) pseudogene, the Cryba1 gene for crystallin beta A1 and two CpG islands, complete sequence Length = 220230 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 gaggacacagtggacaccg 28 ||||||||||||||||||| Sbjct: 8916 gaggacacagtggacaccg 8934
>emb|AJ251805.1|BPH251805 Bacteriophage phiYeO3-12 complete genome Length = 39600 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 30 ggtgaagtggaagctctca 48 ||||||||||||||||||| Sbjct: 32467 ggtgaagtggaagctctca 32485
>emb|AL669919.11| Mouse DNA sequence from clone DN-84L11 on chromosome 3 Contains a novel gene, a novel pseudogene, an actin pseudogene, a germ cell-less homolog 1 (Drosophila)-like (GMCL1L) pseudogene, and an RNA-binding protein with multiple splicing 2 (RBPMS2) pseudogene, complete sequence Length = 142341 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 attcagacagtggaaggga 125 ||||||||||||||||||| Sbjct: 91930 attcagacagtggaaggga 91948
>gb|AC022780.19| Mus musculus chromosome 11, clone RP23-179C3, complete sequence Length = 237498 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 gaggacacagtggacaccg 28 ||||||||||||||||||| Sbjct: 10733 gaggacacagtggacaccg 10715
>gb|AC006509.15| Homo sapiens 2p16 PAC RPCI5-960D23 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 124015 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 56 gccatggcaatgtggtaag 74 ||||||||||||||||||| Sbjct: 83104 gccatggcaatgtggtaag 83122
>dbj|AK153809.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:C920003C23 product:Hypothetical alpha/beta-Hydrolases structure containing protein, full insert sequence Length = 3235 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 gaggacacagtggacaccg 28 ||||||||||||||||||| Sbjct: 951 gaggacacagtggacaccg 969
>ref|NM_026185.1| Mus musculus RIKEN cDNA 1300007F04 gene (1300007F04Rik), mRNA Length = 2663 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 gaggacacagtggacaccg 28 ||||||||||||||||||| Sbjct: 949 gaggacacagtggacaccg 967
>dbj|AK018696.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:C920019P20 product:hypothetical alpha/beta-Hydrolases structure containing protein, full insert sequence Length = 1436 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 gaggacacagtggacaccg 28 ||||||||||||||||||| Sbjct: 569 gaggacacagtggacaccg 587
>dbj|AK040037.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430048L21 product:hypothetical protein, full insert sequence Length = 1732 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 gaggacacagtggacaccg 28 ||||||||||||||||||| Sbjct: 867 gaggacacagtggacaccg 849
>dbj|AK046590.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length enriched library, clone:B430113H14 product:Hypothetical alpha/beta-Hydrolases structure containing protein, full insert sequence Length = 3085 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 gaggacacagtggacaccg 28 ||||||||||||||||||| Sbjct: 954 gaggacacagtggacaccg 972
>dbj|AK042032.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630053J01 product:RIKEN cDNA 1300007F04 gene, full insert sequence Length = 1404 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 gaggacacagtggacaccg 28 ||||||||||||||||||| Sbjct: 569 gaggacacagtggacaccg 587
>dbj|AK004929.1| Mus musculus adult male liver cDNA, RIKEN full-length enriched library, clone:1300007F04 product:hypothetical alpha/beta-Hydrolases structure containing protein, full insert sequence Length = 2663 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 gaggacacagtggacaccg 28 ||||||||||||||||||| Sbjct: 949 gaggacacagtggacaccg 967
>emb|AJ617119.1| Nicotiana plumbaginifolia cDNA-AFLP fragment, clone Np333 Length = 194 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 84 cgttggtggtgaatttgat 102 ||||||||||||||||||| Sbjct: 19 cgttggtggtgaatttgat 37
>emb|BX901965.5| Mouse DNA sequence from clone RP23-152A17 on chromosome X, complete sequence Length = 69398 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 107 attcagacagtggaaggga 125 ||||||||||||||||||| Sbjct: 52651 attcagacagtggaaggga 52633
>emb|BX322590.10| Mouse DNA sequence from clone RP23-14B5 on chromosome X, complete sequence Length = 223699 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 attcagacagtggaaggga 125 ||||||||||||||||||| Sbjct: 139599 attcagacagtggaaggga 139617
>emb|CT010474.12| Mouse DNA sequence from clone RP23-199B14 on chromosome 12, complete sequence Length = 205340 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 97 tttgattcaaattcagaca 115 ||||||||||||||||||| Sbjct: 51914 tttgattcaaattcagaca 51932
>gb|AC131991.8| Mus musculus chromosome 12, clone RP24-190H17, complete sequence Length = 148426 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 97 tttgattcaaattcagaca 115 ||||||||||||||||||| Sbjct: 136823 tttgattcaaattcagaca 136841
>gb|AC108811.12| Mus musculus chromosome 8, clone RP23-284C19, complete sequence Length = 212270 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 99 tgattcaaattcagacagt 117 ||||||||||||||||||| Sbjct: 166479 tgattcaaattcagacagt 166461
>gb|AC154370.1| Mus musculus BAC clone RP24-576A8 from 17, complete sequence Length = 167763 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 tagaggacacagtggacac 26 ||||||||||||||||||| Sbjct: 124468 tagaggacacagtggacac 124450
>emb|CT009580.9| Mouse DNA sequence from clone RP23-133F14 on chromosome 17, complete sequence Length = 191260 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 tagaggacacagtggacac 26 ||||||||||||||||||| Sbjct: 572 tagaggacacagtggacac 590
>dbj|D50057.1|SHPP450SCA Sheep mRNA for cytochromes P450scc, complete cds Length = 1826 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 gaggacacagtggacaccg 28 ||||||||||||||||||| Sbjct: 667 gaggacacagtggacaccg 685 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,606,694 Number of Sequences: 3902068 Number of extensions: 1606694 Number of successful extensions: 113187 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 112995 Number of HSP's gapped (non-prelim): 192 length of query: 181 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 159 effective length of database: 17,147,199,772 effective search space: 2726404763748 effective search space used: 2726404763748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)