ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2e07 |
|---|---|
| Clone Library Name | barley_pub |
>SUBF_BACSU (P16397) Bacillopeptidase F precursor (EC 3.4.21.-) (Esterase)| (RP-I protease) (90 kDa serine proteinase) Length = 1433 Score = 30.8 bits (68), Expect = 0.93 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +3 Query: 18 DTVDTVVKWKLSYDSHGNVVRKVRVGGEFDSNSDSGRDDKLEPKWRAQNRFSPSE 182 D +D W L YD G VV + G E++ + L+ K+R N +P+E Sbjct: 204 DQIDAPKAWALGYDGTGTVVASIDTGVEWNHPA-------LKEKYRGYNPENPNE 251
>FA98A_MOUSE (Q3TJZ6) Protein FAM98A| Length = 515 Score = 30.4 bits (67), Expect = 1.2 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 4/77 (5%) Frame = +3 Query: 51 SYDSHGNVVRKVRVG-GEFDSNS-DSGRDDKLEPKWRAQNRFSPSENRGGGAGLKYRPNA 224 SY G + R G G +D GR +K + W + G G+G Y+ A Sbjct: 347 SYGGRGGHEQGGRGGRGSYDHGGRGGGRGNKHQGGWT---------DGGSGSGGGYQDGA 397 Query: 225 --NSGERPGGYTKGHNG 269 +SG +PGGY GH+G Sbjct: 398 YRDSGFQPGGYHGGHSG 414
>GR98D_DROME (Q8IMN5) Putative gustatory receptor 98d| Length = 412 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = -1 Query: 263 MTLGVSSWPLATVGIRPIFQTCSTSPVLTWTKPILS 156 + L V W + VG+ P F + P L WT +L+ Sbjct: 145 LALSVGLWIVLLVGLTPRFTLVALGPYLHWTNKVLT 180
>FA98A_HUMAN (Q8NCA5) Protein FAM98A| Length = 519 Score = 29.3 bits (64), Expect = 2.7 Identities = 18/58 (31%), Positives = 24/58 (41%) Frame = +3 Query: 93 GGEFDSNSDSGRDDKLEPKWRAQNRFSPSENRGGGAGLKYRPNANSGERPGGYTKGHN 266 GG GR +K + W GGG G + +SG +PGGY GH+ Sbjct: 365 GGYDHGGRGGGRGNKHQGGWT-------DGGSGGGGGYQDGGYRDSGFQPGGYHGGHS 415
>FA98A_PONPY (Q5R679) Protein FAM98A| Length = 518 Score = 29.3 bits (64), Expect = 2.7 Identities = 18/58 (31%), Positives = 24/58 (41%) Frame = +3 Query: 93 GGEFDSNSDSGRDDKLEPKWRAQNRFSPSENRGGGAGLKYRPNANSGERPGGYTKGHN 266 GG GR +K + W GGG G + +SG +PGGY GH+ Sbjct: 364 GGYDHGGRGGGRGNKHQGGWT-------DGGSGGGGGYQDGGYRDSGFQPGGYHGGHS 414
>ZEAD_MAIZE (P24450) Zein-alpha precursor (19 kDa) (PMS2)| Length = 233 Score = 28.9 bits (63), Expect = 3.5 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = -1 Query: 275 FITIMTLGVSSWPLATVGIRPIFQTCSTSPVLTWTKPILSP 153 F +M LG+S A+V IF CS +P+ + P LSP Sbjct: 6 FCFLMLLGLS----ASVATATIFPQCSQAPIASLLPPYLSP 42
>ZEAB_MAIZE (P04705) Zein-alpha precursor (19 kDa) (Clone PZ19.1) (Fragment)| Length = 186 Score = 28.5 bits (62), Expect = 4.6 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = -1 Query: 275 FITIMTLGVSSWPLATVGIRPIFQTCSTSPVLTWTKPILSP 153 F IM LG+S A+ IF CS +P+ + P LSP Sbjct: 6 FCLIMLLGLS----ASAATASIFPQCSQAPIASLLPPYLSP 42
>ZEA2_MAIZE (P04704) Zein-alpha precursor (19 kDa) (Clone ZG99)| Length = 235 Score = 28.5 bits (62), Expect = 4.6 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = -1 Query: 275 FITIMTLGVSSWPLATVGIRPIFQTCSTSPVLTWTKPILSP 153 F IM LG+S A+ IF CS +P+ + P LSP Sbjct: 6 FCLIMLLGLS----ASAATASIFPQCSQAPIASLLPPYLSP 42
>ZEAL_MAIZE (P04701) Zein-alpha precursor (Clone Z4)| Length = 267 Score = 28.5 bits (62), Expect = 4.6 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = -1 Query: 275 FITIMTLGVSSWPLATVGIRPIFQTCSTSPVLTWTKPILSP 153 F IM LG+S A+ IF CS +P+ + P LSP Sbjct: 6 FCLIMLLGLS----ASAATASIFPQCSQAPIASLLPPYLSP 42
>RABP_XENLA (P50568) Cellular retinoic acid-binding protein (CRABP) (Retinoic| acid-binding protein, cellular) Length = 137 Score = 28.1 bits (61), Expect = 6.0 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Frame = +3 Query: 87 RVGGEFDSNSDSGRDDKLEPKWRAQNRFSPSENRGGGAGLK---YRPNANSGE 236 ++G EFD + GR K KW ++N+ + + G G K R N GE Sbjct: 66 KIGEEFDEQTVDGRPCKSLAKWVSENKMACEQKLLKGDGPKTAWTREMTNDGE 118
>COTD_BACSU (P07791) Spore coat protein D| Length = 75 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -3 Query: 144 VPICHPFHCLNLNQIHHQREPFLPH 70 VP HP H N+N H Q + PH Sbjct: 29 VPHIHPQHTTNVNHQHFQHVHYFPH 53
>HSP72_DROSI (Q9GSU4) Major heat shock 70 kDa protein Ba (Heat shock protein| Hsp70Ba) (HSP70-87C1) Length = 643 Score = 28.1 bits (61), Expect = 6.0 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 5/92 (5%) Frame = +3 Query: 9 NIEDTVDTVVKWKLSYDSHGNVVRKVRVGGEF-DSNSDSGR---DDKLEPKWR-AQNRFS 173 N++ +V+ KL +V+ K + DSN+ + + D K+E R + Sbjct: 546 NVKQSVEQAPAGKLDEADKNSVLDKCNDTIRWLDSNTTAEKEEFDHKMEELTRHCSPIMT 605 Query: 174 PSENRGGGAGLKYRPNANSGERPGGYTKGHNG 269 +G GAG P AN G++ GG+ G++G Sbjct: 606 KMHQQGAGAGAAGGPGANCGQQAGGF-GGYSG 636
>ARS2_DROME (Q9V9K7) Arsenite-resistance protein 2 homolog| Length = 943 Score = 28.1 bits (61), Expect = 6.0 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 8/64 (12%) Frame = +3 Query: 78 RKVRVGGEFDSNSDSGRDDK--------LEPKWRAQNRFSPSENRGGGAGLKYRPNANSG 233 R+ + GE +S RDD+ +W +N F + GGG G ++RP+ + Sbjct: 12 RRDKFRGERESYRTERRDDRRPVGGSAGARDEWAERNPFRGGASAGGG-GARHRPDYSDY 70 Query: 234 ERPG 245 PG Sbjct: 71 RGPG 74
>NAGH_CLOPE (P26831) Hyalurononglucosaminidase precursor (EC 3.2.1.35)| (Hyaluronidase) (Mu toxin) Length = 1628 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +3 Query: 168 FSPSENRGGGAGLKYRPNANSGE 236 F+PS R G Y+PN N+GE Sbjct: 1240 FAPSNLRDGNLTTSYKPNTNNGE 1262
>PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 925 Score = 28.1 bits (61), Expect = 6.0 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = +3 Query: 174 PSENRGGGAGLKYRPNANSGERPGGYTKGHNGDERG 281 P E GGG G +RP+ G GG + H G G Sbjct: 772 PHEGPGGGMGGGHRPHEGPGGGMGGGHRPHEGPGGG 807
>DHX9_MOUSE (O70133) ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear DNA| helicase II) (NDH II) (DEAH box protein 9) (mHEL-5) Length = 1380 Score = 28.1 bits (61), Expect = 6.0 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%) Frame = +3 Query: 171 SPSENRG--GGAGLKYRPNANSGERP--GGYTKGHNGDERG 281 SP+ RG GG G YR + G R GG +G +GD RG Sbjct: 1307 SPNSYRGNYGGGGGGYRGGSQGGYRNNFGGDYRGSSGDYRG 1347
>VCO7_ADEG1 (Q89707) Major core protein precursor (Protein VII) (pVII)| Length = 72 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +3 Query: 171 SPSENRGGGAGLKYRPNAN 227 SPS+NRG GA ++YR A+ Sbjct: 6 SPSDNRGWGANMRYRRRAS 24
>K1C10_MOUSE (P02535) Keratin, type I cytoskeletal 10 (Cytokeratin-10) (CK-10)| (Keratin-10) (K10) (56 kDa cytokeratin) (Keratin, type I cytoskeletal 59 kDa) Length = 569 Score = 27.7 bits (60), Expect = 7.9 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = +3 Query: 156 AQNRFSPSENRGGGAGLKYRPNANSGERPGGY-TKGHNG 269 + +FS S + GGG G R ++ G GGY ++G +G Sbjct: 7 SSKQFSSSRSGGGGGGGSVRVSSTRGSLGGGYSSEGFSG 45
>YAE6_SCHPO (Q09847) Hypothetical protein C23D3.06c in chromosome I| Length = 1325 Score = 27.7 bits (60), Expect = 7.9 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = -1 Query: 215 PIFQTCSTSPVLTWTKPILSPPFGF 141 P+F + +P T+ KP +PPF F Sbjct: 839 PLFNFSADAPTFTFNKPSETPPFSF 863
>SPS_VICFA (Q43876) Sucrose-phosphate synthase (EC 2.4.1.14)| (UDP-glucose-fructose-phosphate glucosyltransferase) Length = 1059 Score = 27.7 bits (60), Expect = 7.9 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 13/59 (22%) Frame = +3 Query: 105 DSNSDSGRDDKLEPKWRAQNRFSPSEN-------------RGGGAGLKYRPNANSGERP 242 + + DSG D+ L+P A +R + EN R GGA K N+N+ + P Sbjct: 712 ERSGDSGNDNSLDPDGNATDRTTKLENAVLSWSKGISKDTRRGGATEKSGQNSNASKFP 770
>ZEAC_MAIZE (P24449) Zein-alpha precursor (19 kDa) (PMS1)| Length = 235 Score = 27.7 bits (60), Expect = 7.9 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -1 Query: 275 FITIMTLGVSSWPLATVGIRPIFQTCSTSPVLTWTKPILSP 153 F +M LG+S A+ IF CS +P+ + P LSP Sbjct: 6 FCLLMLLGLS----ASAATATIFPQCSQAPIASLLPPYLSP 42
>ZEA1_MAIZE (P02859) Zein-alpha precursor (19 kDa) (Clone A30)| Length = 234 Score = 27.7 bits (60), Expect = 7.9 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -1 Query: 275 FITIMTLGVSSWPLATVGIRPIFQTCSTSPVLTWTKPILSP 153 F +M LG+S A+ IF CS +P+ + P LSP Sbjct: 6 FCLLMLLGLS----ASAATATIFPQCSQAPIASLLPPYLSP 42
>TWST1_GORGO (Q8MI06) Twist-related protein 1| Length = 203 Score = 27.7 bits (60), Expect = 7.9 Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Frame = +3 Query: 99 EFDSNSDSGRDDKLEPKWRAQNRFSP-SENRGGGAGLKYRPNANSGERPGGYTKG--HNG 269 + S+ S DD L +R P S RGG R +A G PGG G G Sbjct: 4 DVSSSPVSPADDSLSNSEEEPDRQQPPSGKRGGRKRRSSRRSAGGGAGPGGAASGGAGGG 63 Query: 270 DERG 281 DE G Sbjct: 64 DEPG 67
>RABP1_FUGRU (O42386) Cellular retinoic acid-binding protein 1 (Cellular| retinoic acid-binding protein I) (CRABP-I) (Retinoic acid-binding protein I, cellular) Length = 136 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = +3 Query: 90 VGGEFDSNSDSGRDDKLEPKWRAQNRFSPSENRGGGAGLK 209 +G EFD + GR K P W ++N+ + G G K Sbjct: 67 IGEEFDEETVDGRKCKSLPTWESENKIRCKQTLVEGDGPK 106 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,535,533 Number of Sequences: 219361 Number of extensions: 992765 Number of successful extensions: 3213 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3070 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3205 length of database: 80,573,946 effective HSP length: 69 effective length of database: 65,438,037 effective search space used: 1570512888 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
