ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_466278.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.059
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.059
3dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.059
4dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.059
5gb|BC060494.1| Xenopus laevis hypothetical protein MGC68827, mRN... 44 0.23
6gb|AC004763.1| Homo sapiens chromosome 5, P1 clone 854b11 (LBNL ... 40 3.7
7gb|AY510087.1| Staphylococcus capitis serine-aspartate repeat fa... 40 3.7
8emb|AL354981.41| Human DNA sequence from clone RP11-696J10 on ch... 40 3.7
9emb|AL136970.8| Human DNA sequence from clone RP1-238D4 on chrom... 40 3.7
10emb|CR380958.1| Candida glabrata strain CBS138 chromosome L comp... 40 3.7
11dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 40 3.7
12gb|AC002428.1|AC002428 Human BAC clone GS1-39E22 from 5q31, comp... 40 3.7
13dbj|AB007546.1| Homo sapiens gene for LECT2, complete cds 40 3.7

>ref|XM_466278.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1893

 Score = 46.1 bits (23), Expect = 0.059
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 102  tttgattcaaattcagacagtggaagggatgacaa 136
            |||| |||||||||||||||||||| |||| ||||
Sbjct: 1270 tttggttcaaattcagacagtggaatggatcacaa 1304



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.059
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 102      tttgattcaaattcagacagtggaagggatgacaa 136
                |||| |||||||||||||||||||| |||| ||||
Sbjct: 21440411 tttggttcaaattcagacagtggaatggatcacaa 21440377



to top

>dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0020C11
          Length = 163328

 Score = 46.1 bits (23), Expect = 0.059
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 102   tttgattcaaattcagacagtggaagggatgacaa 136
             |||| |||||||||||||||||||| |||| ||||
Sbjct: 35338 tttggttcaaattcagacagtggaatggatcacaa 35304



to top

>dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1712_E04
          Length = 110098

 Score = 46.1 bits (23), Expect = 0.059
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 102    tttgattcaaattcagacagtggaagggatgacaa 136
              |||| |||||||||||||||||||| |||| ||||
Sbjct: 100364 tttggttcaaattcagacagtggaatggatcacaa 100330



to top

>gb|BC060494.1| Xenopus laevis hypothetical protein MGC68827, mRNA (cDNA clone
           MGC:68827 IMAGE:4633786), complete cds
          Length = 3061

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 108 tcaaattcagacagtggaaggg 129
           ||||||||||||||||||||||
Sbjct: 602 tcaaattcagacagtggaaggg 623



to top

>gb|AC004763.1| Homo sapiens chromosome 5, P1 clone 854b11 (LBNL H44), complete
            sequence
          Length = 87050

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 176  aagtgagaacaggggaggtg 195
            ||||||||||||||||||||
Sbjct: 4057 aagtgagaacaggggaggtg 4076



to top

>gb|AY510087.1| Staphylococcus capitis serine-aspartate repeat family protein
           (sdrZL) gene, complete cds
          Length = 1698

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 104 tgattcaaattcagacagtg 123
           ||||||||||||||||||||
Sbjct: 471 tgattcaaattcagacagtg 490



to top

>emb|AL354981.41| Human DNA sequence from clone RP11-696J10 on chromosome 9 Contains part
             of the ASTN2 gene for astrotactin 2 (KIAA0634), complete
             sequence
          Length = 117488

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   gattcaaattcagacagtgg 124
             ||||||||||||||||||||
Sbjct: 57756 gattcaaattcagacagtgg 57775



to top

>emb|AL136970.8| Human DNA sequence from clone RP1-238D4 on chromosome 6 Contains part
             of the ME1 gene for malic enzyme 1 (NADP-dependent,
             cytosolic), complete sequence
          Length = 43983

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     aaggaatatagaggacacag 24
             ||||||||||||||||||||
Sbjct: 16590 aaggaatatagaggacacag 16609



to top

>emb|CR380958.1| Candida glabrata strain CBS138 chromosome L complete sequence
          Length = 1440588

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 107     ttcaaattcagacagtggaa 126
               ||||||||||||||||||||
Sbjct: 1184743 ttcaaattcagacagtggaa 1184724



to top

>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 65      tggcaatgtggtaagaaagg 84
               ||||||||||||||||||||
Sbjct: 2753003 tggcaatgtggtaagaaagg 2752984



to top

>gb|AC002428.1|AC002428 Human BAC clone GS1-39E22 from 5q31, complete sequence
          Length = 143875

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   aagtgagaacaggggaggtg 195
             ||||||||||||||||||||
Sbjct: 64211 aagtgagaacaggggaggtg 64230



to top

>dbj|AB007546.1| Homo sapiens gene for LECT2, complete cds
          Length = 11134

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 176  aagtgagaacaggggaggtg 195
            ||||||||||||||||||||
Sbjct: 1460 aagtgagaacaggggaggtg 1479


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,718,158
Number of Sequences: 3902068
Number of extensions: 2718158
Number of successful extensions: 52039
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51996
Number of HSP's gapped (non-prelim): 43
length of query: 281
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 259
effective length of database: 17,147,199,772
effective search space: 4441124740948
effective search space used: 4441124740948
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top