ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2e05 |
|---|---|
| Clone Library Name | barley_pub |
>ZG14_PONPY (Q5RA17) Gastric cancer antigen Zg14 homolog| Length = 280 Score = 92.0 bits (227), Expect = 3e-19 Identities = 45/108 (41%), Positives = 71/108 (65%) Frame = +2 Query: 2 KERLSQIFTSCSPVEXIELQDKPXPSEAQSSAFSKHFGLKHLNGFKVAYVXFKHPSGVQA 181 +E LS++ +SC P++ +ELQ+KP +++ + SK F K + GF+V YV F+ PSGV A Sbjct: 72 EESLSRLLSSCGPLQSVELQEKPDLADSPKESRSKFFHPKPVPGFRVGYVVFQKPSGVSA 131 Query: 182 FKSFKVKKPVVLSGVGHSIKTGINKWIDNYQASLTDVAELQAEVDEFM 325 + ++ P+++S H +KTGI+KWI +Y S+ D L+ EVD FM Sbjct: 132 --ALALQGPLLVSTESHPVKTGIHKWISDYADSVPDPEALRVEVDTFM 177
>ZG14_HUMAN (Q9Y3A4) Gastric cancer antigen Zg14| Length = 280 Score = 90.5 bits (223), Expect = 9e-19 Identities = 46/108 (42%), Positives = 71/108 (65%) Frame = +2 Query: 2 KERLSQIFTSCSPVEXIELQDKPXPSEAQSSAFSKHFGLKHLNGFKVAYVXFKHPSGVQA 181 +E LS++ ++C V+ +ELQ+KP +E+ + SK F K + GF+VAYV F+ PSGV A Sbjct: 72 EESLSRLLSTCGLVQSVELQEKPDLAESPKESRSKFFHPKPVPGFQVAYVVFQKPSGVSA 131 Query: 182 FKSFKVKKPVVLSGVGHSIKTGINKWIDNYQASLTDVAELQAEVDEFM 325 + +K P+++S H +K+GI+KWI +Y S+ D L+ EVD FM Sbjct: 132 --ALALKGPLLVSTESHPVKSGIHKWISDYADSVPDPEALRVEVDTFM 177
>ZG14_MOUSE (Q9D1C9) Gastric cancer antigen Zg14 homolog| Length = 280 Score = 87.4 bits (215), Expect = 8e-18 Identities = 44/108 (40%), Positives = 70/108 (64%) Frame = +2 Query: 2 KERLSQIFTSCSPVEXIELQDKPXPSEAQSSAFSKHFGLKHLNGFKVAYVXFKHPSGVQA 181 +E LS+ + C ++ +ELQ+KP +E+ + S+ F K + GF+VAYV F+ PSGV A Sbjct: 72 QESLSRCLSCCGTIKTVELQEKPDLAESPTEPKSQFFHPKPVPGFQVAYVVFQKPSGVSA 131 Query: 182 FKSFKVKKPVVLSGVGHSIKTGINKWIDNYQASLTDVAELQAEVDEFM 325 + +K P+++S H +K+GI+KWI +Y+ S+ D L+ EVD FM Sbjct: 132 --ALNLKGPLLVSTESHLVKSGIHKWISDYEDSVLDPEALRMEVDAFM 177
>XYNX_CLOTM (P38535) Exoglucanase xynX precursor (EC 3.2.1.91)| (Exocellobiohydrolase) (1,4-beta-cellobiohydrolase) Length = 1087 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +2 Query: 209 VVLSGVGHSIKTGINKWIDNYQASLTDVAELQAEV 313 V +SG+G + IN IDN +AS+ +A L E+ Sbjct: 414 VPISGIGMQMHININSNIDNIKASIEKLASLGVEI 448
>AOTC_XANAC (Q8PK25) N-acetylornithine carbamoyltransferase (EC 2.1.3.9)| (AOTCase) Length = 343 Score = 28.9 bits (63), Expect = 3.4 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%) Frame = +2 Query: 2 KERLSQI---FTSCSPVEXIELQDKPXPSE--AQSSAFSKHFGLKHLNGFKVAYVXFKHP 166 K+R Q+ F SPV I ++ P + A + A +HFG + L G K HP Sbjct: 122 KDREDQVLKSFAKYSPVPVINMETITHPCQELAHALALQEHFGTQDLRGKKYVLTWTYHP 181
>XYND_PAEPO (P45796) Endo-1,4-beta-xylanase D precursor (EC 3.2.1.8) (Xylanase| D) (1,4-beta-D-xylan xylanohydrolase D) Length = 635 Score = 28.9 bits (63), Expect = 3.4 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 4/61 (6%) Frame = +2 Query: 137 KVAYVXFKHPSGVQAFKSFKVKKPVVLSGVG----HSIKTGINKWIDNYQASLTDVAELQ 304 ++ Y+ +P G +K +K P GVG H++ N+W Y A A++ Sbjct: 279 EIGYMVSDNPMGPFTYKGHFLKNPYTFFGVGGNNHHAVFNFKNEWYVVYHAQTVSKAQIG 338 Query: 305 A 307 A Sbjct: 339 A 339
>Y2058_BRAJA (Q9AMW4) Putative cysteine protease yopT-like blr2058 (EC 3.4.22.-)| Length = 298 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -1 Query: 123 CFSPKCLENALDXASEGXGLSCSSIXSTGEQDV 25 CFS +A+D +S GLS SS+ S+ E V Sbjct: 52 CFSKPHTSDAIDDSSNTSGLSTSSLSSSSELSV 84
>Y521_HAEIN (P44744) Protein HI0521| Length = 514 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -3 Query: 97 CTGLXLRRPWFIL*LYRLHWRAGCEYLGQP 8 C G + RP +IL Y ++ + GCE+L P Sbjct: 59 CEGYAIYRPRYILPDYNVYIQKGCEFLELP 88
>MURB_RICCN (Q92IT8) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 295 Score = 28.5 bits (62), Expect = 4.4 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 7/54 (12%) Frame = +2 Query: 98 FSKHFGLKHLNGFKV---AYVXFKHPSGVQAFKSF----KVKKPVVLSGVGHSI 238 + K + LKHL FKV A + FK P + KSF K K P+ G G +I Sbjct: 11 YKKDYNLKHLTWFKVGGNAEIFFK-PLDSEDLKSFLIQNKQKLPIKTFGAGSNI 63
>YZFA_ECOLI (P08339) Very hypothetical 10.6 kDa protein in msrA-chpBI region| Length = 89 Score = 28.1 bits (61), Expect = 5.7 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Frame = -3 Query: 178 LNSRRVFKXNIXHFKAIEM---LQSKVFGECTGLXLRRPWFIL*LYRLHWRAGCEY 20 L SRR F+ + H + ++ + S+ E TG + RPW R WR C+Y Sbjct: 9 LTSRR-FQLALIHRRVVDKRTSMHSRTASESTGARIHRPWCARHQVRPAWR--CQY 61
>AOTC_XANCP (Q8P8J2) N-acetylornithine carbamoyltransferase (EC 2.1.3.9)| (AOTCase) Length = 339 Score = 28.1 bits (61), Expect = 5.7 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Frame = +2 Query: 2 KERLSQI---FTSCSPVEXIELQDKPXPSE--AQSSAFSKHFGLKHLNGFKVAYVXFKHP 166 K+R Q+ F SPV I ++ P + A + A +HFG L G K HP Sbjct: 122 KDREDQVLKSFAKYSPVPVINMETITHPCQELAHALALQEHFGTPDLRGKKYVLTWTYHP 181
>XYNA_THESA (P36917) Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) (Xylanase| A) (1,4-beta-D-xylan xylanohydrolase A) Length = 1157 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +2 Query: 209 VVLSGVGHSIKTGINKWIDNYQASLTDVAELQAEV 313 V + G+G + IN IDN +AS+ +A L E+ Sbjct: 562 VPIDGIGMQMHININSNIDNIKASIEKLASLGVEI 596
>PEX5_CANGA (Q6FM42) Peroxisomal targeting signal receptor (Peroxin-5) (PTS1| receptor) Length = 590 Score = 27.7 bits (60), Expect = 7.5 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Frame = +2 Query: 119 KHLNGFKVAYVXFK-HPSGVQAFKSFKVKKPVVLSGVGHSIKTGINKWIDNYQASLTDVA 295 K LNG K P+ ++A K+ + + G S +N+W D + A Sbjct: 335 KELNGMSALETCLKLDPNNLEAMKNLAIS--YINEGYDMSAYNMLNRWADTKYPGFYNSA 392 Query: 296 ELQAEVDE 319 EL+ + DE Sbjct: 393 ELEGKRDE 400
>PYRG_STAS1 (Q49Z73) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP| synthetase) Length = 536 Score = 27.7 bits (60), Expect = 7.5 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Frame = +2 Query: 215 LSGVGHSIKTGIN-KWIDNYQASLTDVAELQAEVD 316 L G+ K I KWID+ + + +VAE+ AEVD Sbjct: 314 LKHAGYPFKKDIEVKWIDSSEVTDENVAEILAEVD 348
>GLND_VIBF1 (Q9XC07) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 873 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/44 (29%), Positives = 21/44 (47%) Frame = +2 Query: 116 LKHLNGFKVAYVXFKHPSGVQAFKSFKVKKPVVLSGVGHSIKTG 247 LKH+N F KHP + F K+ ++++ + H I G Sbjct: 459 LKHINKFSDTTNRDKHPICCEIFPKIMKKELLIIAAIFHDIAKG 502
>MURB_RICPR (Q9ZDS7) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 295 Score = 27.7 bits (60), Expect = 7.5 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 7/54 (12%) Frame = +2 Query: 98 FSKHFGLKHLNGFKV---AYVXFKHPSGVQAFKSF----KVKKPVVLSGVGHSI 238 + K + LKHL FKV A + FK P KSF K K P+ G G +I Sbjct: 11 YKKDYNLKHLTWFKVGGNAEIFFK-PFDFADLKSFLIQNKQKLPITTFGSGSNI 63
>IGF1R_RAT (P24062) Insulin-like growth factor 1 receptor precursor (EC| 2.7.10.1) (Insulin-like growth factor I receptor) (IGF-I receptor) [Contains: Insulin-like growth factor 1 receptor alpha chain; Insulin-like growth factor 1 receptor beta chain] Length = 1370 Score = 27.3 bits (59), Expect = 9.8 Identities = 7/21 (33%), Positives = 15/21 (71%) Frame = -1 Query: 243 VFIEWPTPDNTTGFLTLKDLK 181 +F++WP P+N G + + ++K Sbjct: 849 IFLKWPEPENPNGLILMYEIK 869
>IGF1R_PIG (Q29000) Insulin-like growth factor 1 receptor (EC 2.7.10.1)| (Insulin-like growth factor I receptor) (IGF-I receptor) (Fragments) Length = 304 Score = 27.3 bits (59), Expect = 9.8 Identities = 7/21 (33%), Positives = 15/21 (71%) Frame = -1 Query: 243 VFIEWPTPDNTTGFLTLKDLK 181 +F++WP P+N G + + ++K Sbjct: 63 IFLKWPEPENPNGLILMYEIK 83
>IGF1R_BOVIN (Q05688) Insulin-like growth factor 1 receptor precursor (EC| 2.7.10.1) (Insulin-like growth factor I receptor) (IGF-I receptor) [Contains: Insulin-like growth factor 1 receptor alpha chain; Insulin-like growth factor 1 receptor beta chain] (F Length = 640 Score = 27.3 bits (59), Expect = 9.8 Identities = 7/21 (33%), Positives = 15/21 (71%) Frame = -1 Query: 243 VFIEWPTPDNTTGFLTLKDLK 181 +F++WP P+N G + + ++K Sbjct: 121 IFLKWPEPENPNGLILMYEIK 141
>IGF1R_HUMAN (P08069) Insulin-like growth factor 1 receptor precursor (EC| 2.7.10.1) (Insulin-like growth factor I receptor) (IGF-I receptor) (CD221 antigen) [Contains: Insulin-like growth factor 1 receptor alpha chain; Insulin-like growth factor 1 recepto Length = 1367 Score = 27.3 bits (59), Expect = 9.8 Identities = 7/21 (33%), Positives = 15/21 (71%) Frame = -1 Query: 243 VFIEWPTPDNTTGFLTLKDLK 181 +F++WP P+N G + + ++K Sbjct: 848 IFLKWPEPENPNGLILMYEIK 868
>YHG3_YEAST (P38756) Protein YHR003C| Length = 429 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +2 Query: 191 FKVKKPVVLSGVGHSIKTGINKWIDNYQASLTDVAELQAEVDE 319 F+ K P+ G+S K + KW N + SLT+V + E E Sbjct: 355 FRGKSPIS----GYSTKLALTKWEANKEISLTNVVLMTKEEQE 393
>GLND_VIBVY (Q7MIF8) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 873 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = +2 Query: 116 LKHLNGFKVAYVXFKHPSGVQAFKSFKVKKPVVLSGVGHSIKTG 247 L H+N F A KHP + + + K+ ++L+ + H I G Sbjct: 459 LNHINTFSYAKNHDKHPICCEVYPRLQKKELLLLAAIFHDIGKG 502
>GLND_VIBVU (Q8DBG3) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 873 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = +2 Query: 116 LKHLNGFKVAYVXFKHPSGVQAFKSFKVKKPVVLSGVGHSIKTG 247 L H+N F A KHP + + + K+ ++L+ + H I G Sbjct: 459 LNHINTFSYAKNHDKHPICCEVYPRLQKKELLLLAAIFHDIGKG 502
>IGF1R_MOUSE (Q60751) Insulin-like growth factor 1 receptor precursor (EC| 2.7.10.1) (Insulin-like growth factor I receptor) (IGF-I receptor) [Contains: Insulin-like growth factor 1 receptor alpha chain; Insulin-like growth factor 1 receptor beta chain] Length = 1373 Score = 27.3 bits (59), Expect = 9.8 Identities = 7/21 (33%), Positives = 15/21 (71%) Frame = -1 Query: 243 VFIEWPTPDNTTGFLTLKDLK 181 +F++WP P+N G + + ++K Sbjct: 849 IFLKWPEPENPNGLILMYEIK 869
>SRE8_CAEEL (Q20249) Serpentine receptor class epsilon-8 (Protein sre-8)| Length = 341 Score = 27.3 bits (59), Expect = 9.8 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Frame = -3 Query: 313 YFSLQFCNIRXRCLIIIYPLVNSGFYRMANS*QHNWFL--NFKR 188 Y FC++ RC+I+ L N N+ HNW L NF R Sbjct: 71 YGGQYFCSMLSRCIIVYQQLGND-----PNNDLHNWILVANFAR 109 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,479,005 Number of Sequences: 219361 Number of extensions: 678433 Number of successful extensions: 1603 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 1582 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1600 length of database: 80,573,946 effective HSP length: 84 effective length of database: 62,147,622 effective search space used: 1491542928 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
