Clone Name | basd2e05 |
---|---|
Clone Library Name | barley_pub |
>gb|BC087376.1| Xenopus laevis hypothetical LOC495988, mRNA (cDNA clone MGC:99141 IMAGE:7205981), complete cds Length = 1160 Score = 398 bits (201), Expect = e-108 Identities = 294/327 (89%) Strand = Plus / Plus Query: 1 aaaggaaaggctgtcccagatattcacatcctgctctccagtggagncgatagagctaca 60 ||||||||| ||||||||||||||||| |||||||||||||||||| | |||||||||| Sbjct: 293 aaaggaaagtctgtcccagatattcacgtcctgctctccagtggagtccgtagagctaca 352 Query: 61 ggataaaccanggccttctgaggcncagtccagtgcattctccaaacactttggactgaa 120 |||||||||| | ||||||||| | ||||| | || |||||||||||||| | || | Sbjct: 353 ggataaaccaggaccttctgagacgcagtctaactcagtctccaaacactttagcctcag 412 Query: 121 gcatctcaatggctttaaagtggcntatgttgngtttaaacacccgtctggagttcaggc 180 ||| ||||| |||||||||||||| ||||||| |||||||||||| |||||||||||||| Sbjct: 413 gcacctcaagggctttaaagtggcatatgttgtgtttaaacacccctctggagttcaggc 472 Query: 181 ctttaaatcttttaaagttaagaaaccagttgtgttgtcaggagttggccattctataaa 240 ||||||||| |||||||||||||| ||| | |||||||||||| |||||||||||||||| Sbjct: 473 ctttaaatcatttaaagttaagaagccaatcgtgttgtcaggaattggccattctataaa 532 Query: 241 aaccggaattaacaagtggatagataattatcaggcatctctnacggatgttgcagaact 300 ||||||||||||||||||||||||||| |||| ||| ||||| |||||||||||||| || Sbjct: 533 aaccggaattaacaagtggatagataactatcgggcgtctctcacggatgttgcagagct 592 Query: 301 gcaagctgaagtagatgaatttatgaa 327 ||||||||||||||||||||||||||| Sbjct: 593 gcaagctgaagtagatgaatttatgaa 619
>gb|AC115341.6| Rattus norvegicus 3 BAC CH230-248O1 (Children's Hospital Oakland Research Institute) complete sequence Length = 237425 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 175 tcaggcctttaaatcttttaaagtt 199 |||||||||||||| |||||||||| Sbjct: 13786 tcaggcctttaaattttttaaagtt 13810
>gb|AF152173.1| Trypanosoma brucei beta-adaptin (Bad1) gene, complete cds Length = 3221 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 194 aaagttaagaaaccagttgtg 214 ||||||||||||||||||||| Sbjct: 210 aaagttaagaaaccagttgtg 230
>gb|BC086886.1| Mus musculus superoxide dismutase 1, soluble, mRNA (cDNA clone MGC:107553 IMAGE:6760550), complete cds Length = 655 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aaccagttgtgttgtcagga 223 |||||||||||||||||||| Sbjct: 191 aaccagttgtgttgtcagga 210
>gb|AC120404.25| Mus musculus chromosome 6, clone RP24-405O23, complete sequence Length = 202146 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 112 tggactgaagcatctcaatggctttaaa 139 ||||||||||| ||||||| |||||||| Sbjct: 8606 tggactgaagcgtctcaatagctttaaa 8579
>ref|NM_011434.1| Mus musculus superoxide dismutase 1, soluble (Sod1), mRNA Length = 661 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aaccagttgtgttgtcagga 223 |||||||||||||||||||| Sbjct: 199 aaccagttgtgttgtcagga 218
>ref|XM_989693.1| PREDICTED: Mus musculus similar to Superoxide dismutase (LOC667310), mRNA Length = 630 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aaccagttgtgttgtcagga 223 |||||||||||||||||||| Sbjct: 187 aaccagttgtgttgtcagga 206
>ref|XM_991115.1| PREDICTED: Mus musculus similar to Superoxide dismutase (LOC545845), mRNA Length = 616 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aaccagttgtgttgtcagga 223 |||||||||||||||||||| Sbjct: 187 aaccagttgtgttgtcagga 206
>ref|XM_921076.2| PREDICTED: Mus musculus similar to Superoxide dismutase, transcript variant 4 (LOC545845), mRNA Length = 634 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aaccagttgtgttgtcagga 223 |||||||||||||||||||| Sbjct: 187 aaccagttgtgttgtcagga 206
>gb|AC122296.4| Mus musculus BAC clone RP23-265P8 from 6, complete sequence Length = 211697 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 aaccagttgtgttgtcagga 223 |||||||||||||||||||| Sbjct: 54052 aaccagttgtgttgtcagga 54033
>gb|BC057074.1| Mus musculus superoxide dismutase 1, soluble, mRNA (cDNA clone IMAGE:5697222), partial cds Length = 4025 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aaccagttgtgttgtcagga 223 |||||||||||||||||||| Sbjct: 2062 aaccagttgtgttgtcagga 2081
>gb|AC117624.10| Mus musculus chromosome 8, clone RP23-114M9, complete sequence Length = 207159 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 agataattatcaggcatctc 281 |||||||||||||||||||| Sbjct: 123875 agataattatcaggcatctc 123856
>emb|AL590064.9| Human DNA sequence from clone RP11-471M10 on chromosome 13 Contains part of a novel gene similar to TPTE and PTEN homologous inositol lipid phosphatase (TPIP), a TPIP pseudogene and a cytochrome C (HCS) pseudogene, complete sequence Length = 73766 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 gataattatcaggcatctct 282 |||||||||||||||||||| Sbjct: 11586 gataattatcaggcatctct 11567
>emb|X06683.1|MMSOD1 Mouse mRNA for Cu-Zn superoxide dismutase (EC 1.15.1.1) Length = 535 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aaccagttgtgttgtcagga 223 |||||||||||||||||||| Sbjct: 87 aaccagttgtgttgtcagga 106
>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold Length = 1889755 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 297 aactgcaagctgaagtagatgaat 320 |||||||||| ||||||||||||| Sbjct: 1638312 aactgcaagcagaagtagatgaat 1638289
>emb|CR407218.1| Gallus gallus finished cDNA, clone ChEST798e21 Length = 1151 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 tgttgcagaactgcaagctg 308 |||||||||||||||||||| Sbjct: 413 tgttgcagaactgcaagctg 432
>gb|AC159203.2| Mus musculus BAC clone RP23-239O13 from chromosome 13, complete sequence Length = 181617 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 taaatcttttaaagttaagaaacc 207 |||||||||||||||| ||||||| Sbjct: 662 taaatcttttaaagtttagaaacc 685
>dbj|AK080929.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length enriched library, clone:B430212F23 product:superoxide dismutase 1, soluble, full insert sequence Length = 3393 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aaccagttgtgttgtcagga 223 |||||||||||||||||||| Sbjct: 2043 aaccagttgtgttgtcagga 2062
>dbj|AK080908.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length enriched library, clone:B430204E11 product:superoxide dismutase 1, soluble, full insert sequence Length = 3394 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aaccagttgtgttgtcagga 223 |||||||||||||||||||| Sbjct: 2044 aaccagttgtgttgtcagga 2063
>dbj|AK077284.1| Mus musculus 11 days pregnant adult female ovary and uterus cDNA, RIKEN full-length enriched library, clone:5033405L01 product:superoxide dismutase 1, soluble, full insert sequence Length = 590 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aaccagttgtgttgtcagga 223 |||||||||||||||||||| Sbjct: 139 aaccagttgtgttgtcagga 158
>gb|BC032986.1| Mus musculus superoxide dismutase 1, soluble, mRNA (cDNA clone IMAGE:1313787) Length = 698 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 aaccagttgtgttgtcagga 223 |||||||||||||||||||| Sbjct: 499 aaccagttgtgttgtcagga 480
>dbj|AK020624.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530064N04 product:superoxide dismutase 1, soluble, full insert sequence Length = 561 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aaccagttgtgttgtcagga 223 |||||||||||||||||||| Sbjct: 105 aaccagttgtgttgtcagga 124
>gb|AC122152.3| Oryctolagus cuniculus clone LB1-297M16, complete sequence Length = 189392 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 297 aactgcaagctgaagtagatgaat 320 |||||||||| ||||||||||||| Sbjct: 90109 aactgcaagcagaagtagatgaat 90086
>gb|AC009307.4| Homo sapiens BAC clone RP11-292A10 from 2, complete sequence Length = 153866 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 aaatcttttaaagttaagaa 204 |||||||||||||||||||| Sbjct: 133508 aaatcttttaaagttaagaa 133489
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 ccagatattcacatcctgct 35 |||||||||||||||||||| Sbjct: 619864 ccagatattcacatcctgct 619845
>emb|BX469926.18| Zebrafish DNA sequence from clone DKEY-229E3 in linkage group 20, complete sequence Length = 242408 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 aagctgaagtagatgaattt 322 |||||||||||||||||||| Sbjct: 57822 aagctgaagtagatgaattt 57803
>emb|AL845419.18| Zebrafish DNA sequence from clone CH211-198O19 in linkage group 16, complete sequence Length = 176379 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 ctttaaatcttttaaagtta 200 |||||||||||||||||||| Sbjct: 57789 ctttaaatcttttaaagtta 57770
>emb|BX120008.9| Zebrafish DNA sequence from clone CH211-215G18 in linkage group 14, complete sequence Length = 221928 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 tttaaatcttttaaagttaa 201 |||||||||||||||||||| Sbjct: 42579 tttaaatcttttaaagttaa 42560
>gb|BC002066.1| Mus musculus superoxide dismutase 1, soluble, mRNA (cDNA clone MGC:6157 IMAGE:3496016), complete cds Length = 622 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aaccagttgtgttgtcagga 223 |||||||||||||||||||| Sbjct: 153 aaccagttgtgttgtcagga 172
>gb|BC048874.1| Mus musculus superoxide dismutase 1, soluble, mRNA (cDNA clone MGC:58998 IMAGE:5401293), complete cds Length = 661 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aaccagttgtgttgtcagga 223 |||||||||||||||||||| Sbjct: 199 aaccagttgtgttgtcagga 218
>gb|AC006501.5|AC006501 Homo sapiens, clone hRPK.35_A_1, complete sequence Length = 147021 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 aaatcttttaaagttaagaa 204 |||||||||||||||||||| Sbjct: 72817 aaatcttttaaagttaagaa 72798
>emb|AL929040.12| Zebrafish DNA sequence from clone CH211-284M7 in linkage group 16, complete sequence Length = 171330 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 ctttaaatcttttaaagtta 200 |||||||||||||||||||| Sbjct: 113802 ctttaaatcttttaaagtta 113821
>gb|AC174597.2| Mus musculus BAC clone RP24-418F6 from chromosome 6, complete sequence Length = 188358 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 112 tggactgaagcatctcaatggctttaaa 139 ||||||||||| ||||||| |||||||| Sbjct: 104208 tggactgaagcgtctcaatagctttaaa 104181
>gb|AC139573.4| Mus musculus BAC clone RP23-472H13 from 16, complete sequence Length = 189632 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aaccagttgtgttgtcagga 223 |||||||||||||||||||| Sbjct: 95784 aaccagttgtgttgtcagga 95803
>gb|AC134436.4| Mus musculus BAC clone RP24-439M12 from 13, complete sequence Length = 128990 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 184 taaatcttttaaagttaagaaacc 207 |||||||||||||||| ||||||| Sbjct: 15339 taaatcttttaaagtttagaaacc 15316
>gb|AC163743.6| Mus musculus BAC clone RP23-415J4 from chromosome 13, complete sequence Length = 198305 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 tttaaatcttttaaagttaa 201 |||||||||||||||||||| Sbjct: 80485 tttaaatcttttaaagttaa 80466
>emb|AL670231.7| Mouse DNA sequence from clone RP23-329G7 on chromosome 4, complete sequence Length = 229957 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 gaagtagatgaatttatgaa 327 |||||||||||||||||||| Sbjct: 4983 gaagtagatgaatttatgaa 4964
>gb|M60795.1|MUSSOD102 Mouse Cu-Zn superoxidase dismutase (SOD-1) gene, exon 2 Length = 202 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aaccagttgtgttgtcagga 223 |||||||||||||||||||| Sbjct: 76 aaccagttgtgttgtcagga 95
>gb|M35725.1|MUSCZSOD Mouse Cu-Zn superoxide dismutase mRNA, complete cds Length = 535 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aaccagttgtgttgtcagga 223 |||||||||||||||||||| Sbjct: 87 aaccagttgtgttgtcagga 106 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,803,721 Number of Sequences: 3902068 Number of extensions: 2803721 Number of successful extensions: 52847 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52783 Number of HSP's gapped (non-prelim): 63 length of query: 327 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 305 effective length of database: 17,147,199,772 effective search space: 5229895930460 effective search space used: 5229895930460 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)