Clone Name
basd2e05
Clone Library Name
barley_pub
No.
Definition
Score (bits)
E Value
1 gb|BC087376.1| Xenopus laevis hypothetical LOC495988, mRNA (cDNA...
398
e-108
2 gb|AC115341.6| Rattus norvegicus 3 BAC CH230-248O1 (Children's H...
42
1.1
3 gb|AF152173.1| Trypanosoma brucei beta-adaptin (Bad1) gene, comp...
42
1.1
4 gb|BC086886.1| Mus musculus superoxide dismutase 1, soluble, mRN...
40
4.3
5 gb|AC120404.25| Mus musculus chromosome 6, clone RP24-405O23, co...
40
4.3
6 ref|NM_011434.1| Mus musculus superoxide dismutase 1, soluble (S...
40
4.3
7 ref|XM_989693.1| PREDICTED: Mus musculus similar to Superoxide d...
40
4.3
8 ref|XM_991115.1| PREDICTED: Mus musculus similar to Superoxide d...
40
4.3
9 ref|XM_921076.2| PREDICTED: Mus musculus similar to Superoxide d...
40
4.3
10 gb|AC122296.4| Mus musculus BAC clone RP23-265P8 from 6, complet...
40
4.3
11 gb|BC057074.1| Mus musculus superoxide dismutase 1, soluble, mRN...
40
4.3
12 gb|AC117624.10| Mus musculus chromosome 8, clone RP23-114M9, com...
40
4.3
13 emb|AL590064.9| Human DNA sequence from clone RP11-471M10 on chr...
40
4.3
14 emb|X06683.1|MMSOD1 Mouse mRNA for Cu-Zn superoxide dismutase (E...
40
4.3
15 gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
40
4.3
16 emb|CR407218.1| Gallus gallus finished cDNA, clone ChEST798e21
40
4.3
17 gb|AC159203.2| Mus musculus BAC clone RP23-239O13 from chromosom...
40
4.3
18 dbj|AK080929.1| Mus musculus 4 days neonate male adipose cDNA, R...
40
4.3
19 dbj|AK080908.1| Mus musculus 4 days neonate male adipose cDNA, R...
40
4.3
20 dbj|AK077284.1| Mus musculus 11 days pregnant adult female ovary...
40
4.3
21 gb|BC032986.1| Mus musculus superoxide dismutase 1, soluble, mRN...
40
4.3
22 dbj|AK020624.1| Mus musculus adult male urinary bladder cDNA, RI...
40
4.3
23 gb|AC122152.3| Oryctolagus cuniculus clone LB1-297M16, complete ...
40
4.3
24 gb|AC009307.4| Homo sapiens BAC clone RP11-292A10 from 2, comple...
40
4.3
25 gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
40
4.3
26 emb|BX469926.18| Zebrafish DNA sequence from clone DKEY-229E3 in...
40
4.3
27 emb|AL845419.18| Zebrafish DNA sequence from clone CH211-198O19 ...
40
4.3
28 emb|BX120008.9| Zebrafish DNA sequence from clone CH211-215G18 i...
40
4.3
29 gb|BC002066.1| Mus musculus superoxide dismutase 1, soluble, mRN...
40
4.3
30 gb|BC048874.1| Mus musculus superoxide dismutase 1, soluble, mRN...
40
4.3
31 gb|AC006501.5|AC006501 Homo sapiens, clone hRPK.35_A_1, complete...
40
4.3
32 emb|AL929040.12| Zebrafish DNA sequence from clone CH211-284M7 i...
40
4.3
33 gb|AC174597.2| Mus musculus BAC clone RP24-418F6 from chromosome...
40
4.3
34 gb|AC139573.4| Mus musculus BAC clone RP23-472H13 from 16, compl...
40
4.3
35 gb|AC134436.4| Mus musculus BAC clone RP24-439M12 from 13, compl...
40
4.3
36 gb|AC163743.6| Mus musculus BAC clone RP23-415J4 from chromosome...
40
4.3
37 emb|AL670231.7| Mouse DNA sequence from clone RP23-329G7 on chro...
40
4.3
38 gb|M60795.1|MUSSOD102 Mouse Cu-Zn superoxidase dismutase (SOD-1)...
40
4.3
39 gb|M35725.1|MUSCZSOD Mouse Cu-Zn superoxide dismutase mRNA, comp...
40
4.3
>gb| BC087376.1 | Xenopus laevis hypothetical LOC495988, mRNA (cDNA clone MGC:99141
IMAGE:7205981), complete cds
Length = 1160
Score = 398 bits (201), Expect = e-108
Identities = 294/327 (89%)
Strand = Plus / Plus
Query: 1 aaaggaaaggctgtcccagatattcacatcctgctctccagtggagncgatagagctaca 60
||||||||| ||||||||||||||||| |||||||||||||||||| | ||||||||||
Sbjct: 293 aaaggaaagtctgtcccagatattcacgtcctgctctccagtggagtccgtagagctaca 352
Query: 61 ggataaaccanggccttctgaggcncagtccagtgcattctccaaacactttggactgaa 120
|||||||||| | ||||||||| | ||||| | || |||||||||||||| | || |
Sbjct: 353 ggataaaccaggaccttctgagacgcagtctaactcagtctccaaacactttagcctcag 412
Query: 121 gcatctcaatggctttaaagtggcntatgttgngtttaaacacccgtctggagttcaggc 180
||| ||||| |||||||||||||| ||||||| |||||||||||| ||||||||||||||
Sbjct: 413 gcacctcaagggctttaaagtggcatatgttgtgtttaaacacccctctggagttcaggc 472
Query: 181 ctttaaatcttttaaagttaagaaaccagttgtgttgtcaggagttggccattctataaa 240
||||||||| |||||||||||||| ||| | |||||||||||| ||||||||||||||||
Sbjct: 473 ctttaaatcatttaaagttaagaagccaatcgtgttgtcaggaattggccattctataaa 532
Query: 241 aaccggaattaacaagtggatagataattatcaggcatctctnacggatgttgcagaact 300
||||||||||||||||||||||||||| |||| ||| ||||| |||||||||||||| ||
Sbjct: 533 aaccggaattaacaagtggatagataactatcgggcgtctctcacggatgttgcagagct 592
Query: 301 gcaagctgaagtagatgaatttatgaa 327
|||||||||||||||||||||||||||
Sbjct: 593 gcaagctgaagtagatgaatttatgaa 619
>gb| AC115341.6 | Rattus norvegicus 3 BAC CH230-248O1 (Children's Hospital Oakland
Research Institute) complete sequence
Length = 237425
Score = 42.1 bits (21), Expect = 1.1
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 175 tcaggcctttaaatcttttaaagtt 199
|||||||||||||| ||||||||||
Sbjct: 13786 tcaggcctttaaattttttaaagtt 13810
>gb| AF152173.1 | Trypanosoma brucei beta-adaptin (Bad1) gene, complete cds
Length = 3221
Score = 42.1 bits (21), Expect = 1.1
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 194 aaagttaagaaaccagttgtg 214
|||||||||||||||||||||
Sbjct: 210 aaagttaagaaaccagttgtg 230
>gb| BC086886.1 | Mus musculus superoxide dismutase 1, soluble, mRNA (cDNA clone
MGC:107553 IMAGE:6760550), complete cds
Length = 655
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 204 aaccagttgtgttgtcagga 223
||||||||||||||||||||
Sbjct: 191 aaccagttgtgttgtcagga 210
>gb| AC120404.25 | Mus musculus chromosome 6, clone RP24-405O23, complete sequence
Length = 202146
Score = 40.1 bits (20), Expect = 4.3
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 112 tggactgaagcatctcaatggctttaaa 139
||||||||||| ||||||| ||||||||
Sbjct: 8606 tggactgaagcgtctcaatagctttaaa 8579
>ref| NM_011434.1 | Mus musculus superoxide dismutase 1, soluble (Sod1), mRNA
Length = 661
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 204 aaccagttgtgttgtcagga 223
||||||||||||||||||||
Sbjct: 199 aaccagttgtgttgtcagga 218
>ref| XM_989693.1 | PREDICTED: Mus musculus similar to Superoxide dismutase
(LOC667310), mRNA
Length = 630
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 204 aaccagttgtgttgtcagga 223
||||||||||||||||||||
Sbjct: 187 aaccagttgtgttgtcagga 206
>ref| XM_991115.1 | PREDICTED: Mus musculus similar to Superoxide dismutase
(LOC545845), mRNA
Length = 616
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 204 aaccagttgtgttgtcagga 223
||||||||||||||||||||
Sbjct: 187 aaccagttgtgttgtcagga 206
>ref| XM_921076.2 | PREDICTED: Mus musculus similar to Superoxide dismutase, transcript
variant 4 (LOC545845), mRNA
Length = 634
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 204 aaccagttgtgttgtcagga 223
||||||||||||||||||||
Sbjct: 187 aaccagttgtgttgtcagga 206
>gb| AC122296.4 | Mus musculus BAC clone RP23-265P8 from 6, complete sequence
Length = 211697
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 204 aaccagttgtgttgtcagga 223
||||||||||||||||||||
Sbjct: 54052 aaccagttgtgttgtcagga 54033
>gb| BC057074.1 | Mus musculus superoxide dismutase 1, soluble, mRNA (cDNA clone
IMAGE:5697222), partial cds
Length = 4025
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 204 aaccagttgtgttgtcagga 223
||||||||||||||||||||
Sbjct: 2062 aaccagttgtgttgtcagga 2081
>gb| AC117624.10 | Mus musculus chromosome 8, clone RP23-114M9, complete sequence
Length = 207159
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 262 agataattatcaggcatctc 281
||||||||||||||||||||
Sbjct: 123875 agataattatcaggcatctc 123856
>emb| AL590064.9 | Human DNA sequence from clone RP11-471M10 on chromosome 13 Contains
part of a novel gene similar to TPTE and PTEN homologous
inositol lipid phosphatase (TPIP), a TPIP pseudogene and a
cytochrome C (HCS) pseudogene, complete sequence
Length = 73766
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 263 gataattatcaggcatctct 282
||||||||||||||||||||
Sbjct: 11586 gataattatcaggcatctct 11567
>emb| X06683.1 |MMSOD1 Mouse mRNA for Cu-Zn superoxide dismutase (EC 1.15.1.1)
Length = 535
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 204 aaccagttgtgttgtcagga 223
||||||||||||||||||||
Sbjct: 87 aaccagttgtgttgtcagga 106
>gb| DP000006.1 | Oryctolagus cuniculus target 1 genomic scaffold
Length = 1889755
Score = 40.1 bits (20), Expect = 4.3
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 297 aactgcaagctgaagtagatgaat 320
|||||||||| |||||||||||||
Sbjct: 1638312 aactgcaagcagaagtagatgaat 1638289
>emb| CR407218.1 | Gallus gallus finished cDNA, clone ChEST798e21
Length = 1151
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 289 tgttgcagaactgcaagctg 308
||||||||||||||||||||
Sbjct: 413 tgttgcagaactgcaagctg 432
>gb| AC159203.2 | Mus musculus BAC clone RP23-239O13 from chromosome 13, complete
sequence
Length = 181617
Score = 40.1 bits (20), Expect = 4.3
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 184 taaatcttttaaagttaagaaacc 207
|||||||||||||||| |||||||
Sbjct: 662 taaatcttttaaagtttagaaacc 685
>dbj| AK080929.1 | Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length
enriched library, clone:B430212F23 product:superoxide
dismutase 1, soluble, full insert sequence
Length = 3393
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 204 aaccagttgtgttgtcagga 223
||||||||||||||||||||
Sbjct: 2043 aaccagttgtgttgtcagga 2062
>dbj| AK080908.1 | Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length
enriched library, clone:B430204E11 product:superoxide
dismutase 1, soluble, full insert sequence
Length = 3394
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 204 aaccagttgtgttgtcagga 223
||||||||||||||||||||
Sbjct: 2044 aaccagttgtgttgtcagga 2063
>dbj| AK077284.1 | Mus musculus 11 days pregnant adult female ovary and uterus cDNA,
RIKEN full-length enriched library, clone:5033405L01
product:superoxide dismutase 1, soluble, full insert
sequence
Length = 590
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 204 aaccagttgtgttgtcagga 223
||||||||||||||||||||
Sbjct: 139 aaccagttgtgttgtcagga 158
>gb| BC032986.1 | Mus musculus superoxide dismutase 1, soluble, mRNA (cDNA clone
IMAGE:1313787)
Length = 698
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 204 aaccagttgtgttgtcagga 223
||||||||||||||||||||
Sbjct: 499 aaccagttgtgttgtcagga 480
>dbj| AK020624.1 | Mus musculus adult male urinary bladder cDNA, RIKEN full-length
enriched library, clone:9530064N04 product:superoxide
dismutase 1, soluble, full insert sequence
Length = 561
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 204 aaccagttgtgttgtcagga 223
||||||||||||||||||||
Sbjct: 105 aaccagttgtgttgtcagga 124
>gb| AC122152.3 | Oryctolagus cuniculus clone LB1-297M16, complete sequence
Length = 189392
Score = 40.1 bits (20), Expect = 4.3
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 297 aactgcaagctgaagtagatgaat 320
|||||||||| |||||||||||||
Sbjct: 90109 aactgcaagcagaagtagatgaat 90086
>gb| AC009307.4 | Homo sapiens BAC clone RP11-292A10 from 2, complete sequence
Length = 153866
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 185 aaatcttttaaagttaagaa 204
||||||||||||||||||||
Sbjct: 133508 aaatcttttaaagttaagaa 133489
>gb| CP000252.1 | Syntrophus aciditrophicus SB, complete genome
Length = 3179300
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 16 ccagatattcacatcctgct 35
||||||||||||||||||||
Sbjct: 619864 ccagatattcacatcctgct 619845
>emb| BX469926.18 | Zebrafish DNA sequence from clone DKEY-229E3 in linkage group 20,
complete sequence
Length = 242408
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 303 aagctgaagtagatgaattt 322
||||||||||||||||||||
Sbjct: 57822 aagctgaagtagatgaattt 57803
>emb| AL845419.18 | Zebrafish DNA sequence from clone CH211-198O19 in linkage group 16,
complete sequence
Length = 176379
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 181 ctttaaatcttttaaagtta 200
||||||||||||||||||||
Sbjct: 57789 ctttaaatcttttaaagtta 57770
>emb| BX120008.9 | Zebrafish DNA sequence from clone CH211-215G18 in linkage group 14,
complete sequence
Length = 221928
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 182 tttaaatcttttaaagttaa 201
||||||||||||||||||||
Sbjct: 42579 tttaaatcttttaaagttaa 42560
>gb| BC002066.1 | Mus musculus superoxide dismutase 1, soluble, mRNA (cDNA clone
MGC:6157 IMAGE:3496016), complete cds
Length = 622
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 204 aaccagttgtgttgtcagga 223
||||||||||||||||||||
Sbjct: 153 aaccagttgtgttgtcagga 172
>gb| BC048874.1 | Mus musculus superoxide dismutase 1, soluble, mRNA (cDNA clone
MGC:58998 IMAGE:5401293), complete cds
Length = 661
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 204 aaccagttgtgttgtcagga 223
||||||||||||||||||||
Sbjct: 199 aaccagttgtgttgtcagga 218
>gb| AC006501.5 |AC006501 Homo sapiens, clone hRPK.35_A_1, complete sequence
Length = 147021
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 185 aaatcttttaaagttaagaa 204
||||||||||||||||||||
Sbjct: 72817 aaatcttttaaagttaagaa 72798
>emb| AL929040.12 | Zebrafish DNA sequence from clone CH211-284M7 in linkage group 16,
complete sequence
Length = 171330
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 181 ctttaaatcttttaaagtta 200
||||||||||||||||||||
Sbjct: 113802 ctttaaatcttttaaagtta 113821
>gb| AC174597.2 | Mus musculus BAC clone RP24-418F6 from chromosome 6, complete sequence
Length = 188358
Score = 40.1 bits (20), Expect = 4.3
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 112 tggactgaagcatctcaatggctttaaa 139
||||||||||| ||||||| ||||||||
Sbjct: 104208 tggactgaagcgtctcaatagctttaaa 104181
>gb| AC139573.4 | Mus musculus BAC clone RP23-472H13 from 16, complete sequence
Length = 189632
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 204 aaccagttgtgttgtcagga 223
||||||||||||||||||||
Sbjct: 95784 aaccagttgtgttgtcagga 95803
>gb| AC134436.4 | Mus musculus BAC clone RP24-439M12 from 13, complete sequence
Length = 128990
Score = 40.1 bits (20), Expect = 4.3
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 184 taaatcttttaaagttaagaaacc 207
|||||||||||||||| |||||||
Sbjct: 15339 taaatcttttaaagtttagaaacc 15316
>gb| AC163743.6 | Mus musculus BAC clone RP23-415J4 from chromosome 13, complete sequence
Length = 198305
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 182 tttaaatcttttaaagttaa 201
||||||||||||||||||||
Sbjct: 80485 tttaaatcttttaaagttaa 80466
>emb| AL670231.7 | Mouse DNA sequence from clone RP23-329G7 on chromosome 4, complete
sequence
Length = 229957
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 308 gaagtagatgaatttatgaa 327
||||||||||||||||||||
Sbjct: 4983 gaagtagatgaatttatgaa 4964
>gb| M60795.1 |MUSSOD102 Mouse Cu-Zn superoxidase dismutase (SOD-1) gene, exon 2
Length = 202
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 204 aaccagttgtgttgtcagga 223
||||||||||||||||||||
Sbjct: 76 aaccagttgtgttgtcagga 95
>gb| M35725.1 |MUSCZSOD Mouse Cu-Zn superoxide dismutase mRNA, complete cds
Length = 535
Score = 40.1 bits (20), Expect = 4.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 204 aaccagttgtgttgtcagga 223
||||||||||||||||||||
Sbjct: 87 aaccagttgtgttgtcagga 106
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,803,721
Number of Sequences: 3902068
Number of extensions: 2803721
Number of successful extensions: 52847
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52783
Number of HSP's gapped (non-prelim): 63
length of query: 327
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 305
effective length of database: 17,147,199,772
effective search space: 5229895930460
effective search space used: 5229895930460
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)