Clone Name | basd2e04 |
---|---|
Clone Library Name | barley_pub |
>MYH14_MOUSE (Q6URW6) Myosin-14 (Myosin heavy chain, nonmuscle IIc) (Nonmuscle| myosin heavy chain IIc) (NMHC II-C) Length = 2000 Score = 38.1 bits (87), Expect = 0.019 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Frame = +1 Query: 325 VWKVKDARSLEGDLVRAACKLELSMMQTCKLTAQGQSHNLTHDMKAIQKQVSDDQTLLRE 504 VW+ K SLE ++ + K ELS +QT + + + L ++ +Q + SD + E Sbjct: 1242 VWE-KTRLSLEAEV--SELKAELSSLQTSRQEGEQKRRRLESQLQEVQGRSSDSERARSE 1298 Query: 505 KVQHLS-GDAGIERMETALSDARSK 576 + L A +E + TALS+A SK Sbjct: 1299 AAEKLQRAQAELESVSTALSEAESK 1323
>ANGL7_BOVIN (Q5EA66) Angiopoietin-related protein 7 precursor| (Angiopoietin-like 7) Length = 344 Score = 31.2 bits (69), Expect = 2.4 Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 5/102 (4%) Frame = +1 Query: 295 AW-CTYLYRFV---VWKVKDA-RSLEGDLVRAACKLELSMMQTCKLTAQGQSHNLTHDMK 459 AW C +L FV VW K R +L A C E +Q Q NL+ + Sbjct: 10 AWLCIFLVAFVSHPVWPQKPPKRKTPAELTAATCCEEAKALQA-------QIANLSSLLS 62 Query: 460 AIQKQVSDDQTLLREKVQHLSGDAGIERMETALSDARSKFFE 585 + K+ D + +V L A + MET L++A SK+ E Sbjct: 63 DLGKKQERDWVSVVMQVMELESSA--KSMETRLTEAESKYSE 102
>RINI_PIG (P10775) Ribonuclease inhibitor (Ribonuclease/angiogenin inhibitor| 1) Length = 456 Score = 30.8 bits (68), Expect = 3.1 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%) Frame = +1 Query: 343 ARSLEGDLVRAACKLELSMMQTCKLTA---QGQSHNLTHDMKAIQKQVSDDQTLLREKVQ 513 AR L L++ C+LE +++C LTA Q S LT + ++ Q+S ++ Sbjct: 296 ARLLCESLLQPGCQLESLWVKSCSLTAACCQHVSLMLTQNKHLLELQLSSNKL------- 348 Query: 514 HLSGDAGIERMETALS 561 GD+GI+ + ALS Sbjct: 349 ---GDSGIQELCQALS 361
>GOGB1_HUMAN (Q14789) Golgin subfamily B member 1 (Giantin) (Macrogolgin) (372 kDa| Golgi complex-associated protein) (GCP372) Length = 3259 Score = 29.6 bits (65), Expect = 6.9 Identities = 14/38 (36%), Positives = 24/38 (63%) Frame = +1 Query: 457 KAIQKQVSDDQTLLREKVQHLSGDAGIERMETALSDAR 570 K K+V + + L+++++HL DAGI R ET ++ R Sbjct: 2667 KEAAKKVGEIEDKLKKELKHLHHDAGIMRNETETAEER 2704
>NUP2_YEAST (P32499) Nucleoporin NUP2 (Nuclear pore protein NUP2) (p95)| Length = 720 Score = 29.3 bits (64), Expect = 9.0 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 6/50 (12%) Frame = +1 Query: 145 FELLVKTILEGPGKASRQPS------LDGAESSSCQKSSDVAGQSKFKIQ 276 +EL +K ILE P K+ P+ A+ QKSSD + + + K++ Sbjct: 123 YELYIKNILEAPVKSIENPTQTKGNDAKPAKVEDVQKSSDSSSEDEVKVE 172
>MYH14_HUMAN (Q7Z406) Myosin-14 (Myosin heavy chain, nonmuscle IIc) (Nonmuscle| myosin heavy chain IIc) (NMHC II-C) Length = 1995 Score = 29.3 bits (64), Expect = 9.0 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = +1 Query: 382 KLELSMMQTCKLTAQGQSHNLTHDMKAIQKQVSDDQTLLREKVQHLS-GDAGIERMETAL 558 + ELS +QT + + + L ++ +Q + D + E + L A +E + AL Sbjct: 1254 RAELSSLQTARQEGEQRRRRLELQLQEVQGRAGDGERARAEAAEKLQRAQAELENVSGAL 1313 Query: 559 SDARSK 576 ++A SK Sbjct: 1314 NEAESK 1319 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.129 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,184,364 Number of Sequences: 219361 Number of extensions: 1584638 Number of successful extensions: 3819 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 3727 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3819 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)