ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MYH14_MOUSE (Q6URW6) Myosin-14 (Myosin heavy chain, nonmuscle II... 38 0.019
2ANGL7_BOVIN (Q5EA66) Angiopoietin-related protein 7 precursor (A... 31 2.4
3RINI_PIG (P10775) Ribonuclease inhibitor (Ribonuclease/angiogeni... 31 3.1
4GOGB1_HUMAN (Q14789) Golgin subfamily B member 1 (Giantin) (Macr... 30 6.9
5NUP2_YEAST (P32499) Nucleoporin NUP2 (Nuclear pore protein NUP2)... 29 9.0
6MYH14_HUMAN (Q7Z406) Myosin-14 (Myosin heavy chain, nonmuscle II... 29 9.0

>MYH14_MOUSE (Q6URW6) Myosin-14 (Myosin heavy chain, nonmuscle IIc) (Nonmuscle|
            myosin heavy chain IIc) (NMHC II-C)
          Length = 2000

 Score = 38.1 bits (87), Expect = 0.019
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = +1

Query: 325  VWKVKDARSLEGDLVRAACKLELSMMQTCKLTAQGQSHNLTHDMKAIQKQVSDDQTLLRE 504
            VW+ K   SLE ++  +  K ELS +QT +   + +   L   ++ +Q + SD +    E
Sbjct: 1242 VWE-KTRLSLEAEV--SELKAELSSLQTSRQEGEQKRRRLESQLQEVQGRSSDSERARSE 1298

Query: 505  KVQHLS-GDAGIERMETALSDARSK 576
              + L    A +E + TALS+A SK
Sbjct: 1299 AAEKLQRAQAELESVSTALSEAESK 1323



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>ANGL7_BOVIN (Q5EA66) Angiopoietin-related protein 7 precursor|
           (Angiopoietin-like 7)
          Length = 344

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
 Frame = +1

Query: 295 AW-CTYLYRFV---VWKVKDA-RSLEGDLVRAACKLELSMMQTCKLTAQGQSHNLTHDMK 459
           AW C +L  FV   VW  K   R    +L  A C  E   +Q        Q  NL+  + 
Sbjct: 10  AWLCIFLVAFVSHPVWPQKPPKRKTPAELTAATCCEEAKALQA-------QIANLSSLLS 62

Query: 460 AIQKQVSDDQTLLREKVQHLSGDAGIERMETALSDARSKFFE 585
            + K+   D   +  +V  L   A  + MET L++A SK+ E
Sbjct: 63  DLGKKQERDWVSVVMQVMELESSA--KSMETRLTEAESKYSE 102



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>RINI_PIG (P10775) Ribonuclease inhibitor (Ribonuclease/angiogenin inhibitor|
           1)
          Length = 456

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
 Frame = +1

Query: 343 ARSLEGDLVRAACKLELSMMQTCKLTA---QGQSHNLTHDMKAIQKQVSDDQTLLREKVQ 513
           AR L   L++  C+LE   +++C LTA   Q  S  LT +   ++ Q+S ++        
Sbjct: 296 ARLLCESLLQPGCQLESLWVKSCSLTAACCQHVSLMLTQNKHLLELQLSSNKL------- 348

Query: 514 HLSGDAGIERMETALS 561
              GD+GI+ +  ALS
Sbjct: 349 ---GDSGIQELCQALS 361



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>GOGB1_HUMAN (Q14789) Golgin subfamily B member 1 (Giantin) (Macrogolgin) (372 kDa|
            Golgi complex-associated protein) (GCP372)
          Length = 3259

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 457  KAIQKQVSDDQTLLREKVQHLSGDAGIERMETALSDAR 570
            K   K+V + +  L+++++HL  DAGI R ET  ++ R
Sbjct: 2667 KEAAKKVGEIEDKLKKELKHLHHDAGIMRNETETAEER 2704



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>NUP2_YEAST (P32499) Nucleoporin NUP2 (Nuclear pore protein NUP2) (p95)|
          Length = 720

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
 Frame = +1

Query: 145 FELLVKTILEGPGKASRQPS------LDGAESSSCQKSSDVAGQSKFKIQ 276
           +EL +K ILE P K+   P+         A+    QKSSD + + + K++
Sbjct: 123 YELYIKNILEAPVKSIENPTQTKGNDAKPAKVEDVQKSSDSSSEDEVKVE 172



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>MYH14_HUMAN (Q7Z406) Myosin-14 (Myosin heavy chain, nonmuscle IIc) (Nonmuscle|
            myosin heavy chain IIc) (NMHC II-C)
          Length = 1995

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 382  KLELSMMQTCKLTAQGQSHNLTHDMKAIQKQVSDDQTLLREKVQHLS-GDAGIERMETAL 558
            + ELS +QT +   + +   L   ++ +Q +  D +    E  + L    A +E +  AL
Sbjct: 1254 RAELSSLQTARQEGEQRRRRLELQLQEVQGRAGDGERARAEAAEKLQRAQAELENVSGAL 1313

Query: 559  SDARSK 576
            ++A SK
Sbjct: 1314 NEAESK 1319


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,184,364
Number of Sequences: 219361
Number of extensions: 1584638
Number of successful extensions: 3819
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3819
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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