Clone Name | basd2e04 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_472603.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3342 Score = 224 bits (113), Expect = 3e-55 Identities = 260/309 (84%) Strand = Plus / Plus Query: 285 ttttgacaaagcctggtgcacctacctttacagatttgtggtgtggaaagtaaaagatgc 344 |||||| ||||| |||||| | ||||||||| ||||| ||||||||| | || ||||| Sbjct: 1386 ttttgataaagcatggtgcgcttacctttaccactttgttgtgtggaaactgaaggatgc 1445 Query: 345 aagatcattggagggtgatcttgttagggctgcatgcaagcttgagctgtcaatgatgca 404 | ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1446 caaatcattggaacaagatcttgtcagggctgcatgcaagcttgagctgtcaatgatgca 1505 Query: 405 aacatgcaagttaactgcccaggggcagtcacataacctcacccatgatatgaaggcgat 464 |||||||||||||| | | | |||||||||||| |||| | |||||||||||||| || Sbjct: 1506 aacatgcaagttaagttcagatgggcagtcacatgacctttctcatgatatgaaggcaat 1565 Query: 465 tcagaagcaggtttctgacgatcaaacactcctaagagagaaggttcagcatctgagtgg 524 |||||| |||||| |||| || || | || ||||||||||| ||||||| |||||||| Sbjct: 1566 tcagaaacaggttactgatgaccagaagctgttaagagagaagattcagcacctgagtgg 1625 Query: 525 tgatgcaggtatcgagcgtatggagactgctctctcagatgcaaggtcaaagttctttga 584 |||||||| |||||||| ||| | ||||||| || ||| ||||||||||||||||||| Sbjct: 1626 cgatgcaggcatcgagcggatgaactctgctctttcggatacaaggtcaaagttctttga 1685 Query: 585 agcgaagga 593 |||||||| Sbjct: 1686 ggcgaagga 1694 Score = 121 bits (61), Expect = 3e-24 Identities = 148/177 (83%) Strand = Plus / Plus Query: 7 acaagcaggctgtctagatattcactgagggtggtactctgtgcttacatgatcctggct 66 ||||||| ||| |||||||| |||||| |||| || ||||| |||| ||||| |||||| Sbjct: 1147 acaagcaagctttctagatactcactgcgggtagtcctctgctcttatatgatactggct 1206 Query: 67 catcctagtgctgttttaagtgaagatggtgagcaagagaagctactcatggagtcagca 126 ||||| ||||||| ||||||| | | || ||| | ||||| ||||| |||||||||||| Sbjct: 1207 catccaggtgctgtattaagtggacaaggggagaaggagaatctacttatggagtcagca 1266 Query: 127 gcaaactttgttagggagtttgaactgttggttaagacaatactcgagggaccagga 183 | ||||||||||| ||||||||| || |||||||||||| |||| || |||||||| Sbjct: 1267 gaaaactttgttaaggagtttgagctattggttaagacagtacttgatagaccagga 1323
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 224 bits (113), Expect = 3e-55 Identities = 260/309 (84%) Strand = Plus / Plus Query: 285 ttttgacaaagcctggtgcacctacctttacagatttgtggtgtggaaagtaaaagatgc 344 |||||| ||||| |||||| | ||||||||| ||||| ||||||||| | || ||||| Sbjct: 21853750 ttttgataaagcatggtgcgcttacctttaccactttgttgtgtggaaactgaaggatgc 21853809 Query: 345 aagatcattggagggtgatcttgttagggctgcatgcaagcttgagctgtcaatgatgca 404 | ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 21853810 caaatcattggaacaagatcttgtcagggctgcatgcaagcttgagctgtcaatgatgca 21853869 Query: 405 aacatgcaagttaactgcccaggggcagtcacataacctcacccatgatatgaaggcgat 464 |||||||||||||| | | | |||||||||||| |||| | |||||||||||||| || Sbjct: 21853870 aacatgcaagttaagttcagatgggcagtcacatgacctttctcatgatatgaaggcaat 21853929 Query: 465 tcagaagcaggtttctgacgatcaaacactcctaagagagaaggttcagcatctgagtgg 524 |||||| |||||| |||| || || | || ||||||||||| ||||||| |||||||| Sbjct: 21853930 tcagaaacaggttactgatgaccagaagctgttaagagagaagattcagcacctgagtgg 21853989 Query: 525 tgatgcaggtatcgagcgtatggagactgctctctcagatgcaaggtcaaagttctttga 584 |||||||| |||||||| ||| | ||||||| || ||| ||||||||||||||||||| Sbjct: 21853990 cgatgcaggcatcgagcggatgaactctgctctttcggatacaaggtcaaagttctttga 21854049 Query: 585 agcgaagga 593 |||||||| Sbjct: 21854050 ggcgaagga 21854058 Score = 170 bits (86), Expect = 3e-39 Identities = 247/300 (82%), Gaps = 3/300 (1%) Strand = Plus / Plus Query: 298 tggtgcacctacctttacagatttgtggtgtggaaagtaaaagatgcaagatcattggag 357 |||||| | ||||| ||| | ||||||||||||||| | || ||||| | ||| ||||| Sbjct: 21862321 tggtgcgcttacctctactgctttgtggtgtggaaactgaaggatgcgaaatcgctggag 21862380 Query: 358 ggtgatcttgttagggctgcatgcaagcttgagctgtcaatgatgcaaacatgcaagtta 417 | |||||||| ||||||| ||||||||||||||||| |||||||| || |||||| || Sbjct: 21862381 gacgatcttgtccgggctgcgtgcaagcttgagctgtcgatgatgcagacgtgcaagcta 21862440 Query: 418 actgcccaggggcagtcacataa---cctcacccatgatatgaaggcgattcagaagcag 474 | | | | |||||||||||||| |||| | ||||||||||||||||||||||| ||| Sbjct: 21862441 agttcagatgggcagtcacataatggcctctctcatgatatgaaggcgattcagaaacag 21862500 Query: 475 gtttctgacgatcaaacactcctaagagagaaggttcagcatctgagtggtgatgcaggt 534 ||| |||| ||||| | || || ||||||||||||| || |||||||| |||||||| Sbjct: 21862501 gttgctgatgatcagaagctgttacgagagaaggttcatcaactgagtggcgatgcaggc 21862560 Query: 535 atcgagcgtatggagactgctctctcagatgcaaggtcaaagttctttgaagcgaaggag 594 |||||||| ||| | ||||||| || || ||||||||||||||||||| ||||||||| Sbjct: 21862561 atcgagcggatgaactctgctctttcggacacaaggtcaaagttctttgaggcgaaggag 21862620 Score = 121 bits (61), Expect = 3e-24 Identities = 148/177 (83%) Strand = Plus / Plus Query: 7 acaagcaggctgtctagatattcactgagggtggtactctgtgcttacatgatcctggct 66 ||||||| ||| |||||||| |||||| |||| || ||||| |||| ||||| |||||| Sbjct: 21853511 acaagcaagctttctagatactcactgcgggtagtcctctgctcttatatgatactggct 21853570 Query: 67 catcctagtgctgttttaagtgaagatggtgagcaagagaagctactcatggagtcagca 126 ||||| ||||||| ||||||| | | || ||| | ||||| ||||| |||||||||||| Sbjct: 21853571 catccaggtgctgtattaagtggacaaggggagaaggagaatctacttatggagtcagca 21853630 Query: 127 gcaaactttgttagggagtttgaactgttggttaagacaatactcgagggaccagga 183 | ||||||||||| ||||||||| || |||||||||||| |||| || |||||||| Sbjct: 21853631 gaaaactttgttaaggagtttgagctattggttaagacagtacttgatagaccagga 21853687 Score = 77.8 bits (39), Expect = 4e-11 Identities = 120/147 (81%) Strand = Plus / Plus Query: 18 gtctagatattcactgagggtggtactctgtgcttacatgatcctggctcatcctagtgc 77 |||| |||| || |||||||| || ||||| | |||||||||||||||||||| |||| Sbjct: 21862095 gtctcgatactcgctgagggtagtcctctgctcctacatgatcctggctcatccgggtgc 21862154 Query: 78 tgttttaagtgaagatggtgagcaagagaagctactcatggagtcagcagcaaactttgt 137 || || |||| | | || ||| | ||||||||||| ||||| ||||||| || |||||| Sbjct: 21862155 agtgttgagtggacaaggggagaaggagaagctacttatggattcagcaggaagctttgt 21862214 Query: 138 tagggagtttgaactgttggttaagac 164 | ||||||||| || ||||||||||| Sbjct: 21862215 caaggagtttgagctattggttaagac 21862241
>emb|AL606452.2|OSJN00007 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000114_01, complete sequence Length = 127713 Score = 224 bits (113), Expect = 3e-55 Identities = 260/309 (84%) Strand = Plus / Plus Query: 285 ttttgacaaagcctggtgcacctacctttacagatttgtggtgtggaaagtaaaagatgc 344 |||||| ||||| |||||| | ||||||||| ||||| ||||||||| | || ||||| Sbjct: 38351 ttttgataaagcatggtgcgcttacctttaccactttgttgtgtggaaactgaaggatgc 38410 Query: 345 aagatcattggagggtgatcttgttagggctgcatgcaagcttgagctgtcaatgatgca 404 | ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 38411 caaatcattggaacaagatcttgtcagggctgcatgcaagcttgagctgtcaatgatgca 38470 Query: 405 aacatgcaagttaactgcccaggggcagtcacataacctcacccatgatatgaaggcgat 464 |||||||||||||| | | | |||||||||||| |||| | |||||||||||||| || Sbjct: 38471 aacatgcaagttaagttcagatgggcagtcacatgacctttctcatgatatgaaggcaat 38530 Query: 465 tcagaagcaggtttctgacgatcaaacactcctaagagagaaggttcagcatctgagtgg 524 |||||| |||||| |||| || || | || ||||||||||| ||||||| |||||||| Sbjct: 38531 tcagaaacaggttactgatgaccagaagctgttaagagagaagattcagcacctgagtgg 38590 Query: 525 tgatgcaggtatcgagcgtatggagactgctctctcagatgcaaggtcaaagttctttga 584 |||||||| |||||||| ||| | ||||||| || ||| ||||||||||||||||||| Sbjct: 38591 cgatgcaggcatcgagcggatgaactctgctctttcggatacaaggtcaaagttctttga 38650 Query: 585 agcgaagga 593 |||||||| Sbjct: 38651 ggcgaagga 38659 Score = 170 bits (86), Expect = 3e-39 Identities = 247/300 (82%), Gaps = 3/300 (1%) Strand = Plus / Plus Query: 298 tggtgcacctacctttacagatttgtggtgtggaaagtaaaagatgcaagatcattggag 357 |||||| | ||||| ||| | ||||||||||||||| | || ||||| | ||| ||||| Sbjct: 46922 tggtgcgcttacctctactgctttgtggtgtggaaactgaaggatgcgaaatcgctggag 46981 Query: 358 ggtgatcttgttagggctgcatgcaagcttgagctgtcaatgatgcaaacatgcaagtta 417 | |||||||| ||||||| ||||||||||||||||| |||||||| || |||||| || Sbjct: 46982 gacgatcttgtccgggctgcgtgcaagcttgagctgtcgatgatgcagacgtgcaagcta 47041 Query: 418 actgcccaggggcagtcacataa---cctcacccatgatatgaaggcgattcagaagcag 474 | | | | |||||||||||||| |||| | ||||||||||||||||||||||| ||| Sbjct: 47042 agttcagatgggcagtcacataatggcctctctcatgatatgaaggcgattcagaaacag 47101 Query: 475 gtttctgacgatcaaacactcctaagagagaaggttcagcatctgagtggtgatgcaggt 534 ||| |||| ||||| | || || ||||||||||||| || |||||||| |||||||| Sbjct: 47102 gttgctgatgatcagaagctgttacgagagaaggttcatcaactgagtggcgatgcaggc 47161 Query: 535 atcgagcgtatggagactgctctctcagatgcaaggtcaaagttctttgaagcgaaggag 594 |||||||| ||| | ||||||| || || ||||||||||||||||||| ||||||||| Sbjct: 47162 atcgagcggatgaactctgctctttcggacacaaggtcaaagttctttgaggcgaaggag 47221 Score = 121 bits (61), Expect = 3e-24 Identities = 148/177 (83%) Strand = Plus / Plus Query: 7 acaagcaggctgtctagatattcactgagggtggtactctgtgcttacatgatcctggct 66 ||||||| ||| |||||||| |||||| |||| || ||||| |||| ||||| |||||| Sbjct: 38112 acaagcaagctttctagatactcactgcgggtagtcctctgctcttatatgatactggct 38171 Query: 67 catcctagtgctgttttaagtgaagatggtgagcaagagaagctactcatggagtcagca 126 ||||| ||||||| ||||||| | | || ||| | ||||| ||||| |||||||||||| Sbjct: 38172 catccaggtgctgtattaagtggacaaggggagaaggagaatctacttatggagtcagca 38231 Query: 127 gcaaactttgttagggagtttgaactgttggttaagacaatactcgagggaccagga 183 | ||||||||||| ||||||||| || |||||||||||| |||| || |||||||| Sbjct: 38232 gaaaactttgttaaggagtttgagctattggttaagacagtacttgatagaccagga 38288 Score = 77.8 bits (39), Expect = 4e-11 Identities = 120/147 (81%) Strand = Plus / Plus Query: 18 gtctagatattcactgagggtggtactctgtgcttacatgatcctggctcatcctagtgc 77 |||| |||| || |||||||| || ||||| | |||||||||||||||||||| |||| Sbjct: 46696 gtctcgatactcgctgagggtagtcctctgctcctacatgatcctggctcatccgggtgc 46755 Query: 78 tgttttaagtgaagatggtgagcaagagaagctactcatggagtcagcagcaaactttgt 137 || || |||| | | || ||| | ||||||||||| ||||| ||||||| || |||||| Sbjct: 46756 agtgttgagtggacaaggggagaaggagaagctacttatggattcagcaggaagctttgt 46815 Query: 138 tagggagtttgaactgttggttaagac 164 | ||||||||| || ||||||||||| Sbjct: 46816 caaggagtttgagctattggttaagac 46842
>dbj|AK120173.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013032P11, full insert sequence Length = 3252 Score = 224 bits (113), Expect = 3e-55 Identities = 260/309 (84%) Strand = Plus / Plus Query: 285 ttttgacaaagcctggtgcacctacctttacagatttgtggtgtggaaagtaaaagatgc 344 |||||| ||||| |||||| | ||||||||| ||||| ||||||||| | || ||||| Sbjct: 976 ttttgataaagcatggtgcgcttacctttaccactttgttgtgtggaaactgaaggatgc 1035 Query: 345 aagatcattggagggtgatcttgttagggctgcatgcaagcttgagctgtcaatgatgca 404 | ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1036 caaatcattggaacaagatcttgtcagggctgcatgcaagcttgagctgtcaatgatgca 1095 Query: 405 aacatgcaagttaactgcccaggggcagtcacataacctcacccatgatatgaaggcgat 464 |||||||||||||| | | | |||||||||||| |||| | |||||||||||||| || Sbjct: 1096 aacatgcaagttaagttcagatgggcagtcacatgacctttctcatgatatgaaggcaat 1155 Query: 465 tcagaagcaggtttctgacgatcaaacactcctaagagagaaggttcagcatctgagtgg 524 |||||| |||||| |||| || || | || ||||||||||| ||||||| |||||||| Sbjct: 1156 tcagaaacaggttactgatgaccagaagctgttaagagagaagattcagcacctgagtgg 1215 Query: 525 tgatgcaggtatcgagcgtatggagactgctctctcagatgcaaggtcaaagttctttga 584 |||||||| |||||||| ||| | ||||||| || ||| ||||||||||||||||||| Sbjct: 1216 cgatgcaggcatcgagcggatgaactctgctctttcggatacaaggtcaaagttctttga 1275 Query: 585 agcgaagga 593 |||||||| Sbjct: 1276 ggcgaagga 1284 Score = 121 bits (61), Expect = 3e-24 Identities = 148/177 (83%) Strand = Plus / Plus Query: 7 acaagcaggctgtctagatattcactgagggtggtactctgtgcttacatgatcctggct 66 ||||||| ||| |||||||| |||||| |||| || ||||| |||| ||||| |||||| Sbjct: 737 acaagcaagctttctagatactcactgcgggtagtcctctgctcttatatgatactggct 796 Query: 67 catcctagtgctgttttaagtgaagatggtgagcaagagaagctactcatggagtcagca 126 ||||| ||||||| ||||||| | | || ||| | ||||| ||||| |||||||||||| Sbjct: 797 catccaggtgctgtattaagtggacaaggggagaaggagaatctacttatggagtcagca 856 Query: 127 gcaaactttgttagggagtttgaactgttggttaagacaatactcgagggaccagga 183 | ||||||||||| ||||||||| || |||||||||||| |||| || |||||||| Sbjct: 857 gaaaactttgttaaggagtttgagctattggttaagacagtacttgatagaccagga 913
>dbj|AK067590.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112G22, full insert sequence Length = 2565 Score = 224 bits (113), Expect = 3e-55 Identities = 260/309 (84%) Strand = Plus / Plus Query: 285 ttttgacaaagcctggtgcacctacctttacagatttgtggtgtggaaagtaaaagatgc 344 |||||| ||||| |||||| | ||||||||| ||||| ||||||||| | || ||||| Sbjct: 1607 ttttgataaagcatggtgcgcttacctttaccactttgttgtgtggaaactgaaggatgc 1666 Query: 345 aagatcattggagggtgatcttgttagggctgcatgcaagcttgagctgtcaatgatgca 404 | ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1667 caaatcattggaacaagatcttgtcagggctgcatgcaagcttgagctgtcaatgatgca 1726 Query: 405 aacatgcaagttaactgcccaggggcagtcacataacctcacccatgatatgaaggcgat 464 |||||||||||||| | | | |||||||||||| |||| | |||||||||||||| || Sbjct: 1727 aacatgcaagttaagttcagatgggcagtcacatgacctttctcatgatatgaaggcaat 1786 Query: 465 tcagaagcaggtttctgacgatcaaacactcctaagagagaaggttcagcatctgagtgg 524 |||||| |||||| |||| || || | || ||||||||||| ||||||| |||||||| Sbjct: 1787 tcagaaacaggttactgatgaccagaagctgttaagagagaagattcagcacctgagtgg 1846 Query: 525 tgatgcaggtatcgagcgtatggagactgctctctcagatgcaaggtcaaagttctttga 584 |||||||| |||||||| ||| | ||||||| || ||| ||||||||||||||||||| Sbjct: 1847 cgatgcaggcatcgagcggatgaactctgctctttcggatacaaggtcaaagttctttga 1906 Query: 585 agcgaagga 593 |||||||| Sbjct: 1907 ggcgaagga 1915 Score = 121 bits (61), Expect = 3e-24 Identities = 148/177 (83%) Strand = Plus / Plus Query: 7 acaagcaggctgtctagatattcactgagggtggtactctgtgcttacatgatcctggct 66 ||||||| ||| |||||||| |||||| |||| || ||||| |||| ||||| |||||| Sbjct: 1368 acaagcaagctttctagatactcactgcgggtagtcctctgctcttatatgatactggct 1427 Query: 67 catcctagtgctgttttaagtgaagatggtgagcaagagaagctactcatggagtcagca 126 ||||| ||||||| ||||||| | | || ||| | ||||| ||||| |||||||||||| Sbjct: 1428 catccaggtgctgtattaagtggacaaggggagaaggagaatctacttatggagtcagca 1487 Query: 127 gcaaactttgttagggagtttgaactgttggttaagacaatactcgagggaccagga 183 | ||||||||||| ||||||||| || |||||||||||| |||| || |||||||| Sbjct: 1488 gaaaactttgttaaggagtttgagctattggttaagacagtacttgatagaccagga 1544
>dbj|AK062183.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-D12, full insert sequence Length = 2955 Score = 224 bits (113), Expect = 3e-55 Identities = 260/309 (84%) Strand = Plus / Plus Query: 285 ttttgacaaagcctggtgcacctacctttacagatttgtggtgtggaaagtaaaagatgc 344 |||||| ||||| |||||| | ||||||||| ||||| ||||||||| | || ||||| Sbjct: 702 ttttgataaagcatggtgcgcttacctttaccactttgttgtgtggaaactgaaggatgc 761 Query: 345 aagatcattggagggtgatcttgttagggctgcatgcaagcttgagctgtcaatgatgca 404 | ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 762 caaatcattggaacaagatcttgtcagggctgcatgcaagcttgagctgtcaatgatgca 821 Query: 405 aacatgcaagttaactgcccaggggcagtcacataacctcacccatgatatgaaggcgat 464 |||||||||||||| | | | |||||||||||| |||| | |||||||||||||| || Sbjct: 822 aacatgcaagttaagttcagatgggcagtcacatgacctttctcatgatatgaaggcaat 881 Query: 465 tcagaagcaggtttctgacgatcaaacactcctaagagagaaggttcagcatctgagtgg 524 |||||| |||||| |||| || || | || ||||||||||| ||||||| |||||||| Sbjct: 882 tcagaaacaggttactgatgaccagaagctgttaagagagaagattcagcacctgagtgg 941 Query: 525 tgatgcaggtatcgagcgtatggagactgctctctcagatgcaaggtcaaagttctttga 584 |||||||| |||||||| ||| | ||||||| || ||| ||||||||||||||||||| Sbjct: 942 cgatgcaggcatcgagcggatgaactctgctctttcggatacaaggtcaaagttctttga 1001 Query: 585 agcgaagga 593 |||||||| Sbjct: 1002 ggcgaagga 1010 Score = 121 bits (61), Expect = 3e-24 Identities = 148/177 (83%) Strand = Plus / Plus Query: 7 acaagcaggctgtctagatattcactgagggtggtactctgtgcttacatgatcctggct 66 ||||||| ||| |||||||| |||||| |||| || ||||| |||| ||||| |||||| Sbjct: 463 acaagcaagctttctagatactcactgcgggtagtcctctgctcttatatgatactggct 522 Query: 67 catcctagtgctgttttaagtgaagatggtgagcaagagaagctactcatggagtcagca 126 ||||| ||||||| ||||||| | | || ||| | ||||| ||||| |||||||||||| Sbjct: 523 catccaggtgctgtattaagtggacaaggggagaaggagaatctacttatggagtcagca 582 Query: 127 gcaaactttgttagggagtttgaactgttggttaagacaatactcgagggaccagga 183 | ||||||||||| ||||||||| || |||||||||||| |||| || |||||||| Sbjct: 583 gaaaactttgttaaggagtttgagctattggttaagacagtacttgatagaccagga 639
>ref|XM_472605.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2415 Score = 170 bits (86), Expect = 3e-39 Identities = 247/300 (82%), Gaps = 3/300 (1%) Strand = Plus / Plus Query: 298 tggtgcacctacctttacagatttgtggtgtggaaagtaaaagatgcaagatcattggag 357 |||||| | ||||| ||| | ||||||||||||||| | || ||||| | ||| ||||| Sbjct: 496 tggtgcgcttacctctactgctttgtggtgtggaaactgaaggatgcgaaatcgctggag 555 Query: 358 ggtgatcttgttagggctgcatgcaagcttgagctgtcaatgatgcaaacatgcaagtta 417 | |||||||| ||||||| ||||||||||||||||| |||||||| || |||||| || Sbjct: 556 gacgatcttgtccgggctgcgtgcaagcttgagctgtcgatgatgcagacgtgcaagcta 615 Query: 418 actgcccaggggcagtcacataa---cctcacccatgatatgaaggcgattcagaagcag 474 | | | | |||||||||||||| |||| | ||||||||||||||||||||||| ||| Sbjct: 616 agttcagatgggcagtcacataatggcctctctcatgatatgaaggcgattcagaaacag 675 Query: 475 gtttctgacgatcaaacactcctaagagagaaggttcagcatctgagtggtgatgcaggt 534 ||| |||| ||||| | || || ||||||||||||| || |||||||| |||||||| Sbjct: 676 gttgctgatgatcagaagctgttacgagagaaggttcatcaactgagtggcgatgcaggc 735 Query: 535 atcgagcgtatggagactgctctctcagatgcaaggtcaaagttctttgaagcgaaggag 594 |||||||| ||| | ||||||| || || ||||||||||||||||||| ||||||||| Sbjct: 736 atcgagcggatgaactctgctctttcggacacaaggtcaaagttctttgaggcgaaggag 795 Score = 77.8 bits (39), Expect = 4e-11 Identities = 120/147 (81%) Strand = Plus / Plus Query: 18 gtctagatattcactgagggtggtactctgtgcttacatgatcctggctcatcctagtgc 77 |||| |||| || |||||||| || ||||| | |||||||||||||||||||| |||| Sbjct: 270 gtctcgatactcgctgagggtagtcctctgctcctacatgatcctggctcatccgggtgc 329 Query: 78 tgttttaagtgaagatggtgagcaagagaagctactcatggagtcagcagcaaactttgt 137 || || |||| | | || ||| | ||||||||||| ||||| ||||||| || |||||| Sbjct: 330 agtgttgagtggacaaggggagaaggagaagctacttatggattcagcaggaagctttgt 389 Query: 138 tagggagtttgaactgttggttaagac 164 | ||||||||| || ||||||||||| Sbjct: 390 caaggagtttgagctattggttaagac 416
>ref|XM_466211.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2580 Score = 99.6 bits (50), Expect = 1e-17 Identities = 107/126 (84%) Strand = Plus / Plus Query: 285 ttttgacaaagcctggtgcacctacctttacagatttgtggtgtggaaagtaaaagatgc 344 |||||||||||| ||||| |||| |||||| || ||||||||||||| ||||||||| Sbjct: 261 ttttgacaaagcttggtgtgcctatctttaccacttcgtggtgtggaaagcaaaagatgc 320 Query: 345 aagatcattggagggtgatcttgttagggctgcatgcaagcttgagctgtcaatgatgca 404 || ||| | |||| |||||||| || ||||||||||| |||||||| ||||||||||| Sbjct: 321 aaagtcactagaggaagatcttgtcagagctgcatgcaaacttgagctatcaatgatgca 380 Query: 405 aacatg 410 |||||| Sbjct: 381 aacatg 386 Score = 73.8 bits (37), Expect = 6e-10 Identities = 103/125 (82%) Strand = Plus / Plus Query: 46 tgtgcttacatgatcctggctcatcctagtgctgttttaagtgaagatggtgagcaagag 105 |||||||||||||| || | ||| || |||| |||||| | |||| ||||||| |||| Sbjct: 7 tgtgcttacatgatactaggtcacccaagtgttgtttttaatgaacgaggtgagcgagag 66 Query: 106 aagctactcatggagtcagcagcaaactttgttagggagtttgaactgttggttaagaca 165 || ||||| |||||||||||| ||||||||| | ||| || |||||| || |||||||| Sbjct: 67 aaactacttgtggagtcagcagaaaactttgtgaaggaattcgaactgctgattaagaca 126 Query: 166 atact 170 ||||| Sbjct: 127 atact 131
>ref|XM_466210.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3911 Score = 99.6 bits (50), Expect = 1e-17 Identities = 107/126 (84%) Strand = Plus / Plus Query: 285 ttttgacaaagcctggtgcacctacctttacagatttgtggtgtggaaagtaaaagatgc 344 |||||||||||| ||||| |||| |||||| || ||||||||||||| ||||||||| Sbjct: 1628 ttttgacaaagcttggtgtgcctatctttaccacttcgtggtgtggaaagcaaaagatgc 1687 Query: 345 aagatcattggagggtgatcttgttagggctgcatgcaagcttgagctgtcaatgatgca 404 || ||| | |||| |||||||| || ||||||||||| |||||||| ||||||||||| Sbjct: 1688 aaagtcactagaggaagatcttgtcagagctgcatgcaaacttgagctatcaatgatgca 1747 Query: 405 aacatg 410 |||||| Sbjct: 1748 aacatg 1753 Score = 85.7 bits (43), Expect = 2e-13 Identities = 124/151 (82%) Strand = Plus / Plus Query: 20 ctagatattcactgagggtggtactctgtgcttacatgatcctggctcatcctagtgctg 79 |||||||||||| |||| | || || |||||||||||||| || | ||| || |||| || Sbjct: 1348 ctagatattcaccgaggatagttctttgtgcttacatgatactaggtcacccaagtgttg 1407 Query: 80 ttttaagtgaagatggtgagcaagagaagctactcatggagtcagcagcaaactttgtta 139 |||| | |||| ||||||| |||||| ||||| |||||||||||| ||||||||| | Sbjct: 1408 tttttaatgaacgaggtgagcgagagaaactacttgtggagtcagcagaaaactttgtga 1467 Query: 140 gggagtttgaactgttggttaagacaatact 170 ||| || |||||| || ||||||||||||| Sbjct: 1468 aggaattcgaactgctgattaagacaatact 1498
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 99.6 bits (50), Expect = 1e-17 Identities = 107/126 (84%) Strand = Plus / Plus Query: 285 ttttgacaaagcctggtgcacctacctttacagatttgtggtgtggaaagtaaaagatgc 344 |||||||||||| ||||| |||| |||||| || ||||||||||||| ||||||||| Sbjct: 21076274 ttttgacaaagcttggtgtgcctatctttaccacttcgtggtgtggaaagcaaaagatgc 21076333 Query: 345 aagatcattggagggtgatcttgttagggctgcatgcaagcttgagctgtcaatgatgca 404 || ||| | |||| |||||||| || ||||||||||| |||||||| ||||||||||| Sbjct: 21076334 aaagtcactagaggaagatcttgtcagagctgcatgcaaacttgagctatcaatgatgca 21076393 Query: 405 aacatg 410 |||||| Sbjct: 21076394 aacatg 21076399 Score = 85.7 bits (43), Expect = 2e-13 Identities = 124/151 (82%) Strand = Plus / Plus Query: 20 ctagatattcactgagggtggtactctgtgcttacatgatcctggctcatcctagtgctg 79 |||||||||||| |||| | || || |||||||||||||| || | ||| || |||| || Sbjct: 21075994 ctagatattcaccgaggatagttctttgtgcttacatgatactaggtcacccaagtgttg 21076053 Query: 80 ttttaagtgaagatggtgagcaagagaagctactcatggagtcagcagcaaactttgtta 139 |||| | |||| ||||||| |||||| ||||| |||||||||||| ||||||||| | Sbjct: 21076054 tttttaatgaacgaggtgagcgagagaaactacttgtggagtcagcagaaaactttgtga 21076113 Query: 140 gggagtttgaactgttggttaagacaatact 170 ||| || |||||| || ||||||||||||| Sbjct: 21076114 aggaattcgaactgctgattaagacaatact 21076144
>dbj|AP004017.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1008_F08 Length = 105979 Score = 99.6 bits (50), Expect = 1e-17 Identities = 107/126 (84%) Strand = Plus / Plus Query: 285 ttttgacaaagcctggtgcacctacctttacagatttgtggtgtggaaagtaaaagatgc 344 |||||||||||| ||||| |||| |||||| || ||||||||||||| ||||||||| Sbjct: 78019 ttttgacaaagcttggtgtgcctatctttaccacttcgtggtgtggaaagcaaaagatgc 78078 Query: 345 aagatcattggagggtgatcttgttagggctgcatgcaagcttgagctgtcaatgatgca 404 || ||| | |||| |||||||| || ||||||||||| |||||||| ||||||||||| Sbjct: 78079 aaagtcactagaggaagatcttgtcagagctgcatgcaaacttgagctatcaatgatgca 78138 Query: 405 aacatg 410 |||||| Sbjct: 78139 aacatg 78144 Score = 85.7 bits (43), Expect = 2e-13 Identities = 124/151 (82%) Strand = Plus / Plus Query: 20 ctagatattcactgagggtggtactctgtgcttacatgatcctggctcatcctagtgctg 79 |||||||||||| |||| | || || |||||||||||||| || | ||| || |||| || Sbjct: 77739 ctagatattcaccgaggatagttctttgtgcttacatgatactaggtcacccaagtgttg 77798 Query: 80 ttttaagtgaagatggtgagcaagagaagctactcatggagtcagcagcaaactttgtta 139 |||| | |||| ||||||| |||||| ||||| |||||||||||| ||||||||| | Sbjct: 77799 tttttaatgaacgaggtgagcgagagaaactacttgtggagtcagcagaaaactttgtga 77858 Query: 140 gggagtttgaactgttggttaagacaatact 170 ||| || |||||| || ||||||||||||| Sbjct: 77859 aggaattcgaactgctgattaagacaatact 77889
>dbj|AK066869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013083I21, full insert sequence Length = 2580 Score = 99.6 bits (50), Expect = 1e-17 Identities = 107/126 (84%) Strand = Plus / Plus Query: 285 ttttgacaaagcctggtgcacctacctttacagatttgtggtgtggaaagtaaaagatgc 344 |||||||||||| ||||| |||| |||||| || ||||||||||||| ||||||||| Sbjct: 261 ttttgacaaagcttggtgtgcctatctttaccacttcgtggtgtggaaagcaaaagatgc 320 Query: 345 aagatcattggagggtgatcttgttagggctgcatgcaagcttgagctgtcaatgatgca 404 || ||| | |||| |||||||| || ||||||||||| |||||||| ||||||||||| Sbjct: 321 aaagtcactagaggaagatcttgtcagagctgcatgcaaacttgagctatcaatgatgca 380 Query: 405 aacatg 410 |||||| Sbjct: 381 aacatg 386 Score = 73.8 bits (37), Expect = 6e-10 Identities = 103/125 (82%) Strand = Plus / Plus Query: 46 tgtgcttacatgatcctggctcatcctagtgctgttttaagtgaagatggtgagcaagag 105 |||||||||||||| || | ||| || |||| |||||| | |||| ||||||| |||| Sbjct: 7 tgtgcttacatgatactaggtcacccaagtgttgtttttaatgaacgaggtgagcgagag 66 Query: 106 aagctactcatggagtcagcagcaaactttgttagggagtttgaactgttggttaagaca 165 || ||||| |||||||||||| ||||||||| | ||| || |||||| || |||||||| Sbjct: 67 aaactacttgtggagtcagcagaaaactttgtgaaggaattcgaactgctgattaagaca 126 Query: 166 atact 170 ||||| Sbjct: 127 atact 131
>dbj|AK073875.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074B12, full insert sequence Length = 3913 Score = 91.7 bits (46), Expect = 2e-15 Identities = 106/126 (84%) Strand = Plus / Plus Query: 285 ttttgacaaagcctggtgcacctacctttacagatttgtggtgtggaaagtaaaagatgc 344 |||||||||||| ||||| |||| |||||| || |||||||| |||| ||||||||| Sbjct: 1628 ttttgacaaagcttggtgtgcctatctttaccacttcgtggtgtgtaaagcaaaagatgc 1687 Query: 345 aagatcattggagggtgatcttgttagggctgcatgcaagcttgagctgtcaatgatgca 404 || ||| | |||| |||||||| || ||||||||||| |||||||| ||||||||||| Sbjct: 1688 aaagtcactagaggaagatcttgtcagagctgcatgcaaacttgagctatcaatgatgca 1747 Query: 405 aacatg 410 |||||| Sbjct: 1748 aacatg 1753 Score = 85.7 bits (43), Expect = 2e-13 Identities = 124/151 (82%) Strand = Plus / Plus Query: 20 ctagatattcactgagggtggtactctgtgcttacatgatcctggctcatcctagtgctg 79 |||||||||||| |||| | || || |||||||||||||| || | ||| || |||| || Sbjct: 1348 ctagatattcaccgaggatagttctttgtgcttacatgatactaggtcacccaagtgttg 1407 Query: 80 ttttaagtgaagatggtgagcaagagaagctactcatggagtcagcagcaaactttgtta 139 |||| | |||| ||||||| |||||| ||||| |||||||||||| ||||||||| | Sbjct: 1408 tttttaatgaacgaggtgagcgagagaaactacttgtggagtcagcagaaaactttgtga 1467 Query: 140 gggagtttgaactgttggttaagacaatact 170 ||| || |||||| || ||||||||||||| Sbjct: 1468 aggaattcgaactgctgattaagacaatact 1498
>gb|AC125136.4| Mus musculus BAC clone RP24-323L3 from chromosome 19, complete sequence Length = 150261 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 310 ctttacagatttgtggtgtgga 331 |||||||||||||||||||||| Sbjct: 20601 ctttacagatttgtggtgtgga 20580
>gb|AC134322.25| Medicago truncatula clone mth2-17i21, complete sequence Length = 136954 Score = 44.1 bits (22), Expect = 0.52 Identities = 82/102 (80%) Strand = Plus / Plus Query: 319 tttgtggtgtggaaagtaaaagatgcaagatcattggagggtgatcttgttagggctgca 378 |||||||| ||||| || || ||||| |||| ||||||| |||| | ||||| || || Sbjct: 1417 tttgtggtctggaaggttaaggatgctcgatctttggaggatgatttggttagagcagct 1476 Query: 379 tgcaagcttgagctgtcaatgatgcaaacatgcaagttaact 420 ||| |||||||| || ||||| ||||| |||||||||||| Sbjct: 1477 tgccagcttgaggcttctatgattcaaacttgcaagttaact 1518
>gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, complete sequence Length = 217738 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 310 ctttacagatttgtggtgtgga 331 |||||||||||||||||||||| Sbjct: 13894 ctttacagatttgtggtgtgga 13915
>emb|Z99120.2|BSUB0017 Bacillus subtilis complete genome (section 17 of 21): from 3213330 to 3414388 Length = 201059 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 aaaagatgcaagatcattgga 356 ||||||||||||||||||||| Sbjct: 195610 aaaagatgcaagatcattgga 195590
>emb|AJ223978.1|BS43KBDNA Bacillus subtilis 42.7kB DNA fragment from yvsA to yvqA Length = 42782 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 aaaagatgcaagatcattgga 356 ||||||||||||||||||||| Sbjct: 18316 aaaagatgcaagatcattgga 18336
>gb|AF027683.1| Culicosporella lunata small subunit ribosomal RNA gene, complete sequence Length = 1343 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 222 atctagttgccagaagtcttctgat 246 |||||||| |||||||||||||||| Sbjct: 1290 atctagttaccagaagtcttctgat 1266
>gb|AC161814.2| Mus musculus BAC clone RP24-120E13 from chromosome 17, complete sequence Length = 196752 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cagcaaactttgttagggagt 145 ||||||||||||||||||||| Sbjct: 41601 cagcaaactttgttagggagt 41581
>gb|AF200531.1|AF200531 Zea mays cellulose synthase-7 (CesA-7) mRNA, complete cds Length = 3968 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 124 gcagcaaactttgttagggag 144 ||||||||||||||||||||| Sbjct: 1469 gcagcaaactttgttagggag 1489
>gb|AY103655.1| Zea mays PCO096398 mRNA sequence Length = 3897 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 124 gcagcaaactttgttagggag 144 ||||||||||||||||||||| Sbjct: 1482 gcagcaaactttgttagggag 1502
>emb|AL772402.5| Mouse DNA sequence from clone RP23-65J9 on chromosome 11, complete sequence Length = 242502 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 174 gggaccaggaaaagcctcaag 194 ||||||||||||||||||||| Sbjct: 218748 gggaccaggaaaagcctcaag 218768
>gb|AC123993.10| Mus musculus chromosome 3, clone RP24-357L20, complete sequence Length = 187115 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gtggaaagtaaaagatgcaa 346 |||||||||||||||||||| Sbjct: 115808 gtggaaagtaaaagatgcaa 115789
>gb|AC133600.2| Mus musculus BAC clone RP24-399N24 from chromosome 3, complete sequence Length = 197428 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gtggaaagtaaaagatgcaa 346 |||||||||||||||||||| Sbjct: 189746 gtggaaagtaaaagatgcaa 189765
>gb|AC141893.4| Mus musculus BAC clone RP23-324F17 from chromosome 15, complete sequence Length = 182603 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 tggtactctgtgcttacatg 57 |||||||||||||||||||| Sbjct: 178734 tggtactctgtgcttacatg 178753
>ref|XM_542297.2| PREDICTED: Canis familiaris similar to Olfactory guanylyl cyclase GC-D precursor (Guanylate cyclase, olfactory) (LOC485179), mRNA Length = 2940 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 gagactgctctctcagatgc 566 |||||||||||||||||||| Sbjct: 2400 gagactgctctctcagatgc 2419
>emb|CR339054.14| Zebrafish DNA sequence from clone DKEY-151M22 in linkage group 23, complete sequence Length = 184755 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 tgagctgtcaatgatgcaaa 406 |||||||||||||||||||| Sbjct: 95807 tgagctgtcaatgatgcaaa 95788
>gb|AC118931.8| Mus musculus chromosome 19, clone RP24-118A21, complete sequence Length = 233367 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 203 ctcttgatggtgctgaatcatcta 226 ||||||||| |||||||||||||| Sbjct: 110774 ctcttgatgctgctgaatcatcta 110751
>gb|AC155317.5| Mus musculus BAC clone RP23-89D6 from chromosome 15, complete sequence Length = 251377 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 tggtactctgtgcttacatg 57 |||||||||||||||||||| Sbjct: 101914 tggtactctgtgcttacatg 101895
>emb|AL589735.12| Mouse DNA sequence from clone RP23-211M15 on chromosome 13 contains the gene for a novel protein similar to human RU2S or KIAA1154, a ribosomal protein L35A (RPL35A) pseudogene and two CpG islands, complete sequence Length = 199957 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 atttgtggtgtggaaagtaa 337 |||||||||||||||||||| Sbjct: 85076 atttgtggtgtggaaagtaa 85095
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 atgatgcaaacatgcaagtt 416 |||||||||||||||||||| Sbjct: 13223943 atgatgcaaacatgcaagtt 13223962
>dbj|AP003793.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0487E11 Length = 151303 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 atgatgcaaacatgcaagtt 416 |||||||||||||||||||| Sbjct: 96244 atgatgcaaacatgcaagtt 96263
>emb|AL954842.7| Zebrafish DNA sequence from clone DKEY-33E5 in linkage group 8, complete sequence Length = 169016 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 tgagctgtcaatgatgcaaa 406 |||||||||||||||||||| Sbjct: 62114 tgagctgtcaatgatgcaaa 62133
>emb|AL844582.7| Mouse DNA sequence from clone RP23-234C7 on chromosome 2, complete sequence Length = 221723 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 actgaaacaagcaggctgtc 20 |||||||||||||||||||| Sbjct: 87550 actgaaacaagcaggctgtc 87531
>emb|AL603868.15| Mouse DNA sequence from clone RP23-101J23 on chromosome 11, complete sequence Length = 209068 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 ggtttctgacgatcaaacac 493 |||||||||||||||||||| Sbjct: 185991 ggtttctgacgatcaaacac 185972 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,283,858 Number of Sequences: 3902068 Number of extensions: 5283858 Number of successful extensions: 97370 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97174 Number of HSP's gapped (non-prelim): 172 length of query: 594 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 571 effective length of database: 17,143,297,704 effective search space: 9788822988984 effective search space used: 9788822988984 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)