Clone Name | basd2e02 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK104337.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-D06, full insert sequence Length = 2349 Score = 186 bits (94), Expect = 2e-44 Identities = 178/206 (86%) Strand = Plus / Plus Query: 12 gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71 |||||||||||||| ||||||||| ||||||| ||||| ||||| ||||| ||||| ||| Sbjct: 939 gatggaccatgggacatgatgcatcagtttgatgacaatatacctgctcgctcatttgac 998 Query: 72 aatttccagtttgtgaattttactgaaattatgtcaaagagcatagcagctgatagaaaa 131 |||||||||||||||||||| || || || ||||||||||||||||||||||| || || Sbjct: 999 aatttccagtttgtgaatttcacggacatcatgtcaaagagcatagcagctgacaggaag 1058 Query: 132 gaggctgaatttgcgttgtcagcattgatggaaattcctacgcagtacaaagcaacactt 191 ||||| |||||||| | || || ||||||||||| || || || ||||| ||||||||| Sbjct: 1059 gaggcagaatttgcactatccgccttgatggaaatcccaacacaatacaaggcaacactt 1118 Query: 192 gatctccaactccttggtcgtcgcca 217 ||||||||||| || || |||||||| Sbjct: 1119 gatctccaacttctaggccgtcgcca 1144
>dbj|AK100593.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106M02, full insert sequence Length = 2095 Score = 186 bits (94), Expect = 2e-44 Identities = 178/206 (86%) Strand = Plus / Plus Query: 12 gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71 |||||||||||||| ||||||||| ||||||| ||||| ||||| ||||| ||||| ||| Sbjct: 1237 gatggaccatgggacatgatgcatcagtttgatgacaatatacctgctcgctcatttgac 1296 Query: 72 aatttccagtttgtgaattttactgaaattatgtcaaagagcatagcagctgatagaaaa 131 |||||||||||||||||||| || || || ||||||||||||||||||||||| || || Sbjct: 1297 aatttccagtttgtgaatttcacggacatcatgtcaaagagcatagcagctgacaggaag 1356 Query: 132 gaggctgaatttgcgttgtcagcattgatggaaattcctacgcagtacaaagcaacactt 191 ||||| |||||||| | || || ||||||||||| || || || ||||| ||||||||| Sbjct: 1357 gaggcagaatttgcactatccgccttgatggaaatcccaacacaatacaaggcaacactt 1416 Query: 192 gatctccaactccttggtcgtcgcca 217 ||||||||||| || || |||||||| Sbjct: 1417 gatctccaacttctaggccgtcgcca 1442
>dbj|AK099238.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112G09, full insert sequence Length = 1790 Score = 186 bits (94), Expect = 2e-44 Identities = 178/206 (86%) Strand = Plus / Plus Query: 12 gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71 |||||||||||||| ||||||||| ||||||| ||||| ||||| ||||| ||||| ||| Sbjct: 901 gatggaccatgggacatgatgcatcagtttgatgacaatatacctgctcgctcatttgac 960 Query: 72 aatttccagtttgtgaattttactgaaattatgtcaaagagcatagcagctgatagaaaa 131 |||||||||||||||||||| || || || ||||||||||||||||||||||| || || Sbjct: 961 aatttccagtttgtgaatttcacggacatcatgtcaaagagcatagcagctgacaggaag 1020 Query: 132 gaggctgaatttgcgttgtcagcattgatggaaattcctacgcagtacaaagcaacactt 191 ||||| |||||||| | || || ||||||||||| || || || ||||| ||||||||| Sbjct: 1021 gaggcagaatttgcactatccgccttgatggaaatcccaacacaatacaaggcaacactt 1080 Query: 192 gatctccaactccttggtcgtcgcca 217 ||||||||||| || || |||||||| Sbjct: 1081 gatctccaacttctaggccgtcgcca 1106
>dbj|AK067750.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013115P09, full insert sequence Length = 1990 Score = 186 bits (94), Expect = 2e-44 Identities = 178/206 (86%) Strand = Plus / Plus Query: 12 gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71 |||||||||||||| ||||||||| ||||||| ||||| ||||| ||||| ||||| ||| Sbjct: 1133 gatggaccatgggacatgatgcatcagtttgatgacaatatacctgctcgctcatttgac 1192 Query: 72 aatttccagtttgtgaattttactgaaattatgtcaaagagcatagcagctgatagaaaa 131 |||||||||||||||||||| || || || ||||||||||||||||||||||| || || Sbjct: 1193 aatttccagtttgtgaatttcacggacatcatgtcaaagagcatagcagctgacaggaag 1252 Query: 132 gaggctgaatttgcgttgtcagcattgatggaaattcctacgcagtacaaagcaacactt 191 ||||| |||||||| | || || ||||||||||| || || || ||||| ||||||||| Sbjct: 1253 gaggcagaatttgcactatccgccttgatggaaatcccaacacaatacaaggcaacactt 1312 Query: 192 gatctccaactccttggtcgtcgcca 217 ||||||||||| || || |||||||| Sbjct: 1313 gatctccaacttctaggccgtcgcca 1338
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 105 bits (53), Expect = 6e-20 Identities = 107/125 (85%) Strand = Plus / Minus Query: 78 cagtttgtgaattttactgaaattatgtcaaagagcatagcagctgatagaaaagaggct 137 |||||||||||||| || || || ||||||||||||||||||||||| || || ||||| Sbjct: 23847248 cagtttgtgaatttcacggacatcatgtcaaagagcatagcagctgacaggaaggaggca 23847189 Query: 138 gaatttgcgttgtcagcattgatggaaattcctacgcagtacaaagcaacacttgatctc 197 |||||||| | || || ||||||||||| || || || ||||| ||||||||||||||| Sbjct: 23847188 gaatttgcactatccgccttgatggaaatcccaacacaatacaaggcaacacttgatctc 23847129 Query: 198 caact 202 ||||| Sbjct: 23847128 caact 23847124 Score = 81.8 bits (41), Expect = 8e-13 Identities = 62/69 (89%) Strand = Plus / Minus Query: 12 gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71 |||||||||||||| ||||||||| ||||||| ||||| ||||| ||||| ||||| ||| Sbjct: 23847407 gatggaccatgggacatgatgcatcagtttgatgacaatatacctgctcgctcatttgac 23847348 Query: 72 aatttccag 80 ||||||||| Sbjct: 23847347 aatttccag 23847339
>dbj|AP004279.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0556B08 Length = 136775 Score = 105 bits (53), Expect = 6e-20 Identities = 107/125 (85%) Strand = Plus / Minus Query: 78 cagtttgtgaattttactgaaattatgtcaaagagcatagcagctgatagaaaagaggct 137 |||||||||||||| || || || ||||||||||||||||||||||| || || ||||| Sbjct: 86913 cagtttgtgaatttcacggacatcatgtcaaagagcatagcagctgacaggaaggaggca 86854 Query: 138 gaatttgcgttgtcagcattgatggaaattcctacgcagtacaaagcaacacttgatctc 197 |||||||| | || || ||||||||||| || || || ||||| ||||||||||||||| Sbjct: 86853 gaatttgcactatccgccttgatggaaatcccaacacaatacaaggcaacacttgatctc 86794 Query: 198 caact 202 ||||| Sbjct: 86793 caact 86789 Score = 81.8 bits (41), Expect = 8e-13 Identities = 62/69 (89%) Strand = Plus / Minus Query: 12 gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71 |||||||||||||| ||||||||| ||||||| ||||| ||||| ||||| ||||| ||| Sbjct: 87072 gatggaccatgggacatgatgcatcagtttgatgacaatatacctgctcgctcatttgac 87013 Query: 72 aatttccag 80 ||||||||| Sbjct: 87012 aatttccag 87004
>dbj|AK071030.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075N19, full insert sequence Length = 2114 Score = 79.8 bits (40), Expect = 3e-12 Identities = 85/100 (85%) Strand = Plus / Plus Query: 12 gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71 ||||| ||||||||||||||| | | ||||||||||||||||| ||| |||| || ||| Sbjct: 1298 gatggtccatgggatatgatgaaggaatttgacgacaacatacctgctaggtcttttgac 1357 Query: 72 aatttccagtttgtgaattttactgaaattatgtcaaaga 111 |||||||||||||| || || ||| ||| |||||||||| Sbjct: 1358 aatttccagtttgtcaacttcacttcaataatgtcaaaga 1397
>emb|BX824117.1|CNS0A5LE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH23ZF02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1736 Score = 67.9 bits (34), Expect = 1e-08 Identities = 85/102 (83%) Strand = Plus / Plus Query: 10 gggatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcg 69 |||||||||||||||| |||||||| | ||||| || |||||||| || || | |||| Sbjct: 1089 gggatggaccatgggacatgatgcaggaatttgatgataacatacctgcccgagctttcg 1148 Query: 70 acaatttccagtttgtgaattttactgaaattatgtcaaaga 111 | || |||||||||||||| ||||| || || |||||||||| Sbjct: 1149 ataacttccagtttgtgaactttacagagatcatgtcaaaga 1190
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 65.9 bits (33), Expect = 5e-08 Identities = 60/69 (86%) Strand = Plus / Minus Query: 12 gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71 ||||| ||||||||||||||| | | ||||||||||||||||| ||| |||| || ||| Sbjct: 11046414 gatggtccatgggatatgatgaaggaatttgacgacaacatacctgctaggtcttttgac 11046355 Query: 72 aatttccag 80 ||||||||| Sbjct: 11046354 aatttccag 11046346
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 65.9 bits (33), Expect = 5e-08 Identities = 60/69 (86%) Strand = Plus / Minus Query: 12 gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71 ||||| ||||||||||||||| | | ||||||||||||||||| ||| |||| || ||| Sbjct: 11046112 gatggtccatgggatatgatgaaggaatttgacgacaacatacctgctaggtcttttgac 11046053 Query: 72 aatttccag 80 ||||||||| Sbjct: 11046052 aatttccag 11046044
>emb|AL831796.5|CNS08CA9 Oryza sativa chromosome 12, . BAC OSJNBa0012G19 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 157771 Score = 65.9 bits (33), Expect = 5e-08 Identities = 60/69 (86%) Strand = Plus / Plus Query: 12 gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71 ||||| ||||||||||||||| | | ||||||||||||||||| ||| |||| || ||| Sbjct: 139762 gatggtccatgggatatgatgaaggaatttgacgacaacatacctgctaggtcttttgac 139821 Query: 72 aatttccag 80 ||||||||| Sbjct: 139822 aatttccag 139830
>emb|AL844875.4|CNS08CAY Oryza sativa chromosome 12, . BAC OSJNBb0032I14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 134082 Score = 65.9 bits (33), Expect = 5e-08 Identities = 60/69 (86%) Strand = Plus / Plus Query: 12 gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71 ||||| ||||||||||||||| | | ||||||||||||||||| ||| |||| || ||| Sbjct: 59161 gatggtccatgggatatgatgaaggaatttgacgacaacatacctgctaggtcttttgac 59220 Query: 72 aatttccag 80 ||||||||| Sbjct: 59221 aatttccag 59229
>ref|NM_179526.2| Arabidopsis thaliana unknown protein AT1G67800 transcript variant AT1G67800.2 mRNA, complete cds Length = 1704 Score = 61.9 bits (31), Expect = 8e-07 Identities = 64/75 (85%) Strand = Plus / Plus Query: 37 agtttgacgacaacataccggctcggtcattcgacaatttccagtttgtgaattttactg 96 ||||||| |||||||| || ||||| | || ||||||||||||||||||||||| || | Sbjct: 984 agtttgatgacaacatccccgctcgtgcctttgacaatttccagtttgtgaatttcacgg 1043 Query: 97 aaattatgtcaaaga 111 | || |||||||||| Sbjct: 1044 atataatgtcaaaga 1058
>ref|NM_105448.3| Arabidopsis thaliana unknown protein AT1G67800 transcript variant AT1G67800.1 mRNA, complete cds Length = 1854 Score = 61.9 bits (31), Expect = 8e-07 Identities = 64/75 (85%) Strand = Plus / Plus Query: 37 agtttgacgacaacataccggctcggtcattcgacaatttccagtttgtgaattttactg 96 ||||||| |||||||| || ||||| | || ||||||||||||||||||||||| || | Sbjct: 1122 agtttgatgacaacatccccgctcgtgcctttgacaatttccagtttgtgaatttcacgg 1181 Query: 97 aaattatgtcaaaga 111 | || |||||||||| Sbjct: 1182 atataatgtcaaaga 1196
>ref|NM_202371.2| Arabidopsis thaliana unknown protein AT1G67800 transcript variant AT1G67800.3 mRNA, complete cds Length = 1642 Score = 61.9 bits (31), Expect = 8e-07 Identities = 64/75 (85%) Strand = Plus / Plus Query: 37 agtttgacgacaacataccggctcggtcattcgacaatttccagtttgtgaattttactg 96 ||||||| |||||||| || ||||| | || ||||||||||||||||||||||| || | Sbjct: 909 agtttgatgacaacatccccgctcgtgcctttgacaatttccagtttgtgaatttcacgg 968 Query: 97 aaattatgtcaaaga 111 | || |||||||||| Sbjct: 969 atataatgtcaaaga 983
>emb|BX816009.1|CNS0ADET Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH22ZE08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1645 Score = 61.9 bits (31), Expect = 8e-07 Identities = 40/43 (93%) Strand = Plus / Plus Query: 69 gacaatttccagtttgtgaattttactgaaattatgtcaaaga 111 |||||||||||||||||||||||||| || || |||||||||| Sbjct: 1017 gacaatttccagtttgtgaattttacggatataatgtcaaaga 1059
>emb|BX816005.1|CNS0ADDB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH22ZC07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1578 Score = 61.9 bits (31), Expect = 8e-07 Identities = 64/75 (85%) Strand = Plus / Plus Query: 37 agtttgacgacaacataccggctcggtcattcgacaatttccagtttgtgaattttactg 96 ||||||| |||||||| || ||||| | || ||||||||||||||||||||||| || | Sbjct: 894 agtttgatgacaacatccccgctcgtgcctttgacaatttccagtttgtgaatttcacgg 953 Query: 97 aaattatgtcaaaga 111 | || |||||||||| Sbjct: 954 atataatgtcaaaga 968
>emb|BX813899.1|CNS0ADN6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB46ZB04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1543 Score = 61.9 bits (31), Expect = 8e-07 Identities = 64/75 (85%) Strand = Plus / Plus Query: 37 agtttgacgacaacataccggctcggtcattcgacaatttccagtttgtgaattttactg 96 ||||||| |||||||| || ||||| | || ||||||||||||||||||||||| || | Sbjct: 872 agtttgatgacaacatccccgctcgtgcctttgacaatttccagtttgtgaatttcacgg 931 Query: 97 aaattatgtcaaaga 111 | || |||||||||| Sbjct: 932 atataatgtcaaaga 946
>emb|BX816031.1|CNS0AD8P Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH23ZH08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1655 Score = 61.9 bits (31), Expect = 8e-07 Identities = 64/75 (85%) Strand = Plus / Plus Query: 37 agtttgacgacaacataccggctcggtcattcgacaatttccagtttgtgaattttactg 96 ||||||| |||||||| || ||||| | || ||||||||||||||||||||||| || | Sbjct: 975 agtttgatgacaacatccccgctcgtgcctttgacaatttccagtttgtgaatttcacgg 1034 Query: 97 aaattatgtcaaaga 111 | || |||||||||| Sbjct: 1035 atataatgtcaaaga 1049
>gb|AY087355.1| Arabidopsis thaliana clone 34552 mRNA, complete sequence Length = 1839 Score = 61.9 bits (31), Expect = 8e-07 Identities = 64/75 (85%) Strand = Plus / Plus Query: 37 agtttgacgacaacataccggctcggtcattcgacaatttccagtttgtgaattttactg 96 ||||||| |||||||| || ||||| | || ||||||||||||||||||||||| || | Sbjct: 1122 agtttgatgacaacatccccgctcgtgcctttgacaatttccagtttgtgaatttcacgg 1181 Query: 97 aaattatgtcaaaga 111 | || |||||||||| Sbjct: 1182 atataatgtcaaaga 1196
>ref|NM_111031.3| Arabidopsis thaliana unknown protein AT3G01650 mRNA, complete cds Length = 1785 Score = 60.0 bits (30), Expect = 3e-06 Identities = 84/102 (82%) Strand = Plus / Plus Query: 10 gggatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcg 69 |||||||||||||||| |||||||| | ||||| || |||||||| || || | |||| Sbjct: 1089 gggatggaccatgggacatgatgcaggaatttgatgataacatacctgcccgagctttcg 1148 Query: 70 acaatttccagtttgtgaattttactgaaattatgtcaaaga 111 | || |||||||||||||| || || || || |||||||||| Sbjct: 1149 ataacttccagtttgtgaacttcacagagatcatgtcaaaga 1190
>gb|AY110072.1| Zea mays CL26556_1 mRNA sequence Length = 1213 Score = 60.0 bits (30), Expect = 3e-06 Identities = 63/74 (85%) Strand = Plus / Minus Query: 12 gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71 ||||| ||||||||||||||| | | ||||| ||||| ||||| ||| |||| || ||| Sbjct: 803 gatggtccatgggatatgatgaaggaatttgatgacaatataccagctaggtcttttgac 744 Query: 72 aatttccagtttgt 85 |||||||||||||| Sbjct: 743 aatttccagtttgt 730
>emb|BX815128.1|CNS0ACTW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS36ZC03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1562 Score = 54.0 bits (27), Expect = 2e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 69 gacaatttccagtttgtgaattttactgaaattatgtcaaaga 111 ||||||||||||||||||||||| || || || |||||||||| Sbjct: 895 gacaatttccagtttgtgaatttcacggatataatgtcaaaga 937
>emb|BX815118.1|CNS0ACTL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS35ZA06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1758 Score = 54.0 bits (27), Expect = 2e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 37 agtttgacgacaacataccggctcggtcattcgacaatttccagtttgtgaattttactg 96 ||||||| |||||||| || ||||| | || |||||||||||||||||||||| || | Sbjct: 1026 agtttgatgacaacatccccgctcgtgccttttacaatttccagtttgtgaatttcacgg 1085 Query: 97 aaattatgtcaaaga 111 | || |||||||||| Sbjct: 1086 atataatgtcaaaga 1100
>gb|AC149129.3| Medicago truncatula chromosome 7 BAC clone mth2-139m18, complete sequence Length = 106423 Score = 48.1 bits (24), Expect = 0.011 Identities = 30/32 (93%) Strand = Plus / Minus Query: 79 agtttgtgaattttactgaaattatgtcaaag 110 ||||||||||||| || ||||||||||||||| Sbjct: 98146 agtttgtgaatttcacggaaattatgtcaaag 98115
>gb|AC009325.8|ATAC009325 Arabidopsis thaliana chromosome III BAC F4P13 genomic sequence, complete sequence Length = 105543 Score = 44.1 bits (22), Expect = 0.18 Identities = 40/46 (86%) Strand = Plus / Plus Query: 10 gggatggaccatgggatatgatgcataagtttgacgacaacatacc 55 |||||||||||||||| |||||||| | ||||| || |||||||| Sbjct: 66269 gggatggaccatgggacatgatgcaggaatttgatgataacatacc 66314
>gb|AC096374.7| Rattus norvegicus BAC CH230-17K7 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 239221 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 cgttgtcagcattgatggaaat 166 |||||||||||||||||||||| Sbjct: 168842 cgttgtcagcattgatggaaat 168821
>ref|XM_463590.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1488 Score = 42.1 bits (21), Expect = 0.70 Identities = 66/81 (81%) Strand = Plus / Plus Query: 12 gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71 ||||| || ||||| |||||| | |||||||||||||||| || |||| | || ||| Sbjct: 895 gatggcccttgggacatgatgaaagagtttgacgacaacattccttctcgtgcttttgac 954 Query: 72 aatttccagtttgtgaatttt 92 ||||| || |||||||||||| Sbjct: 955 aattttcaatttgtgaatttt 975
>gb|AC115789.9| Mus musculus chromosome 18, clone RP23-398N2, complete sequence Length = 206108 Score = 42.1 bits (21), Expect = 0.70 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 ggaaattcctacgcagtacaa 181 ||||||||||||||||||||| Sbjct: 188028 ggaaattcctacgcagtacaa 188048
>gb|AC116489.6| Mus musculus chromosome 18, clone RP24-137L16, complete sequence Length = 198242 Score = 42.1 bits (21), Expect = 0.70 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 ggaaattcctacgcagtacaa 181 ||||||||||||||||||||| Sbjct: 177157 ggaaattcctacgcagtacaa 177137
>gb|AC109253.9| Mus musculus, clone RP23-351D8, complete sequence Length = 254578 Score = 42.1 bits (21), Expect = 0.70 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 tttgtgaattttactgaaatt 101 ||||||||||||||||||||| Sbjct: 251725 tttgtgaattttactgaaatt 251745
>emb|AL356495.15| Human DNA sequence from clone RP11-206L1 on chromosome 13 Contains the 5' end of the TRPC4 gene for transient receptor potential cation channel, subfamily C, member 4, a heat shock 60kD protein 1 (chaperonin) (HSPD1) pseudogene and a CpG island, complete sequence Length = 173774 Score = 42.1 bits (21), Expect = 0.70 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 aattttactgaaattatgtca 107 ||||||||||||||||||||| Sbjct: 148309 aattttactgaaattatgtca 148329
>gb|AC154567.3| Mus musculus BAC clone RP23-245F1 from chromosome 14, complete sequence Length = 155103 Score = 42.1 bits (21), Expect = 0.70 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 tttgtgaattttactgaaatt 101 ||||||||||||||||||||| Sbjct: 102346 tttgtgaattttactgaaatt 102326
>ref|NM_106586.3| Arabidopsis thaliana ubiquitin-protein ligase/ zinc ion binding AT1G79380 mRNA, complete cds Length = 2139 Score = 40.1 bits (20), Expect = 2.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 65 attcgacaatttccagtttgtgaattttactgaaattatg 104 ||||||||| || |||||||||||||| || || |||||| Sbjct: 1125 attcgacaactttcagtttgtgaatttcacagagattatg 1164
>ref|NM_189355.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1209 Score = 40.1 bits (20), Expect = 2.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 69 gacaatttccagtttgtgaattttactgaaattatgtcaa 108 |||||||| ||||||||||| || || || |||||||||| Sbjct: 739 gacaattttcagtttgtgaacttcacagagattatgtcaa 778
>gb|BT018541.1| Zea mays clone EL01N0437A03.d mRNA sequence Length = 1100 Score = 40.1 bits (20), Expect = 2.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 69 gacaatttccagtttgtgaattttactgaaattatgtcaa 108 |||||||| ||||||||||| || |||| |||||||||| Sbjct: 395 gacaattttcagtttgtgaacttcactggtattatgtcaa 434
>gb|AC161480.9| Mus musculus chromosome 15, clone RP23-404I10, complete sequence Length = 187202 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 107 aaagagcatagcagctgatagaaa 130 ||||||||||||| |||||||||| Sbjct: 28012 aaagagcatagcatctgatagaaa 28035
>gb|AC124678.7| Mus musculus chromosome 15, clone RP24-107K17, complete sequence Length = 137248 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 107 aaagagcatagcagctgatagaaa 130 ||||||||||||| |||||||||| Sbjct: 64248 aaagagcatagcatctgatagaaa 64271
>gb|BT013465.1| Lycopersicon esculentum clone 132124R, mRNA sequence Length = 1928 Score = 40.1 bits (20), Expect = 2.8 Identities = 38/44 (86%) Strand = Plus / Plus Query: 141 tttgcgttgtcagcattgatggaaattcctacgcagtacaaagc 184 |||||| | ||||||||||||||||| ||| | || |||||||| Sbjct: 1132 tttgcgctttcagcattgatggaaatcccttcacaatacaaagc 1175
>emb|CR940311.11| M.truncatula DNA sequence from clone MTH2-17E17 on chromosome 3, complete sequence Length = 122868 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 cagcattgatggaaattcct 170 |||||||||||||||||||| Sbjct: 16530 cagcattgatggaaattcct 16511
>gb|AC131742.2| Mus musculus BAC clone RP23-67I3 from chromosome 1, complete sequence Length = 196557 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 tcattcgacaatttccagtt 82 |||||||||||||||||||| Sbjct: 82767 tcattcgacaatttccagtt 82786
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 taccggctcggtcattcgac 71 |||||||||||||||||||| Sbjct: 1273236 taccggctcggtcattcgac 1273217
>gb|AY133585.1| Arabidopsis thaliana At1g79380/T8K14_20 mRNA, complete cds Length = 1206 Score = 40.1 bits (20), Expect = 2.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 65 attcgacaatttccagtttgtgaattttactgaaattatg 104 ||||||||| || |||||||||||||| || || |||||| Sbjct: 804 attcgacaactttcagtttgtgaatttcacagagattatg 843
>gb|AE005874.1| Caulobacter crescentus CB15 section 200 of 359 of the complete genome Length = 11292 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 gctcggtcattcgacaatttccag 80 ||||||||||||||| |||||||| Sbjct: 1087 gctcggtcattcgacgatttccag 1110
>gb|AC025155.20| Homo sapiens 3 BAC RP11-487M24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 40307 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tttccagtttgtgaatttta 93 |||||||||||||||||||| Sbjct: 36375 tttccagtttgtgaatttta 36356
>gb|AF372928.1|AF372928 Arabidopsis thaliana At1g79380/T8K14_20 mRNA, complete cds Length = 1788 Score = 40.1 bits (20), Expect = 2.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 65 attcgacaatttccagtttgtgaattttactgaaattatg 104 ||||||||| || |||||||||||||| || || |||||| Sbjct: 1125 attcgacaactttcagtttgtgaatttcacagagattatg 1164
>emb|BX814966.1|CNS0ADYM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS20ZE05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1580 Score = 40.1 bits (20), Expect = 2.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 65 attcgacaatttccagtttgtgaattttactgaaattatg 104 ||||||||| || |||||||||||||| || || |||||| Sbjct: 885 attcgacaactttcagtttgtgaatttcacagagattatg 924
>emb|BX814990.1|CNS0ABCS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS22ZE02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1466 Score = 40.1 bits (20), Expect = 2.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 65 attcgacaatttccagtttgtgaattttactgaaattatg 104 ||||||||| || |||||||||||||| || || |||||| Sbjct: 846 attcgacaactttcagtttgtgaatttcacagagattatg 885
>gb|AE010301.1| Leptospira interrogans serovar Lai str. 56601 chromosome II, complete sequence Length = 358943 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 tttccagtttgtgaatttta 93 |||||||||||||||||||| Sbjct: 26073 tttccagtttgtgaatttta 26092
>dbj|AK065423.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013020F11, full insert sequence Length = 2065 Score = 40.1 bits (20), Expect = 2.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 69 gacaatttccagtttgtgaattttactgaaattatgtcaa 108 |||||||| ||||||||||| || || || |||||||||| Sbjct: 1009 gacaattttcagtttgtgaacttcacagagattatgtcaa 1048
>emb|BX571837.10| Zebrafish DNA sequence from clone CH211-261O1 in linkage group 19, complete sequence Length = 190521 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ttactgaaattatgtcaaag 110 |||||||||||||||||||| Sbjct: 108879 ttactgaaattatgtcaaag 108898
>gb|AY105322.1| Zea mays PCO117029 mRNA sequence Length = 1865 Score = 40.1 bits (20), Expect = 2.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 69 gacaatttccagtttgtgaattttactgaaattatgtcaa 108 |||||||| ||||||||||| || |||| |||||||||| Sbjct: 1095 gacaattttcagtttgtgaacttcactggtattatgtcaa 1134
>gb|AE016824.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome II, complete sequence Length = 350181 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 tttccagtttgtgaatttta 93 |||||||||||||||||||| Sbjct: 24604 tttccagtttgtgaatttta 24623
>dbj|AK115025.1| Ciona intestinalis cDNA, clone:cieg027k09, full insert sequence Length = 1731 Score = 40.1 bits (20), Expect = 2.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 12 gatggaccatgggatatgatgcataagtttgacgac 47 |||||||||||||||| ||||| ||||||||||| Sbjct: 867 gatggaccatgggataccatgcaccagtttgacgac 902 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,849,111 Number of Sequences: 3902068 Number of extensions: 1849111 Number of successful extensions: 131430 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 131176 Number of HSP's gapped (non-prelim): 254 length of query: 217 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 195 effective length of database: 17,147,199,772 effective search space: 3343703955540 effective search space used: 3343703955540 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)