ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2e02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK104337.1| Oryza sativa (japonica cultivar-group) cDNA clon... 186 2e-44
2dbj|AK100593.1| Oryza sativa (japonica cultivar-group) cDNA clon... 186 2e-44
3dbj|AK099238.1| Oryza sativa (japonica cultivar-group) cDNA clon... 186 2e-44
4dbj|AK067750.1| Oryza sativa (japonica cultivar-group) cDNA clon... 186 2e-44
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 105 6e-20
6dbj|AP004279.1| Oryza sativa (japonica cultivar-group) genomic D... 105 6e-20
7dbj|AK071030.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 3e-12
8emb|BX824117.1|CNS0A5LE Arabidopsis thaliana Full-length cDNA Co... 68 1e-08
9dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 66 5e-08
10gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 66 5e-08
11emb|AL831796.5|CNS08CA9 Oryza sativa chromosome 12, . BAC OSJNBa... 66 5e-08
12emb|AL844875.4|CNS08CAY Oryza sativa chromosome 12, . BAC OSJNBb... 66 5e-08
13ref|NM_179526.2| Arabidopsis thaliana unknown protein AT1G67800 ... 62 8e-07
14ref|NM_105448.3| Arabidopsis thaliana unknown protein AT1G67800 ... 62 8e-07
15ref|NM_202371.2| Arabidopsis thaliana unknown protein AT1G67800 ... 62 8e-07
16emb|BX816009.1|CNS0ADET Arabidopsis thaliana Full-length cDNA Co... 62 8e-07
17emb|BX816005.1|CNS0ADDB Arabidopsis thaliana Full-length cDNA Co... 62 8e-07
18emb|BX813899.1|CNS0ADN6 Arabidopsis thaliana Full-length cDNA Co... 62 8e-07
19emb|BX816031.1|CNS0AD8P Arabidopsis thaliana Full-length cDNA Co... 62 8e-07
20gb|AY087355.1| Arabidopsis thaliana clone 34552 mRNA, complete s... 62 8e-07
21ref|NM_111031.3| Arabidopsis thaliana unknown protein AT3G01650 ... 60 3e-06
22gb|AY110072.1| Zea mays CL26556_1 mRNA sequence 60 3e-06
23emb|BX815128.1|CNS0ACTW Arabidopsis thaliana Full-length cDNA Co... 54 2e-04
24emb|BX815118.1|CNS0ACTL Arabidopsis thaliana Full-length cDNA Co... 54 2e-04
25gb|AC149129.3| Medicago truncatula chromosome 7 BAC clone mth2-1... 48 0.011
26gb|AC009325.8|ATAC009325 Arabidopsis thaliana chromosome III BAC... 44 0.18
27gb|AC096374.7| Rattus norvegicus BAC CH230-17K7 (Children's Hos... 44 0.18
28ref|XM_463590.1| Oryza sativa (japonica cultivar-group), predic... 42 0.70
29gb|AC115789.9| Mus musculus chromosome 18, clone RP23-398N2, com... 42 0.70
30gb|AC116489.6| Mus musculus chromosome 18, clone RP24-137L16, co... 42 0.70
31gb|AC109253.9| Mus musculus, clone RP23-351D8, complete sequence 42 0.70
32emb|AL356495.15| Human DNA sequence from clone RP11-206L1 on chr... 42 0.70
33gb|AC154567.3| Mus musculus BAC clone RP23-245F1 from chromosome... 42 0.70
34ref|NM_106586.3| Arabidopsis thaliana ubiquitin-protein ligase/ ... 40 2.8
35ref|NM_189355.1| Oryza sativa (japonica cultivar-group), predic... 40 2.8
36gb|BT018541.1| Zea mays clone EL01N0437A03.d mRNA sequence 40 2.8
37gb|AC161480.9| Mus musculus chromosome 15, clone RP23-404I10, co... 40 2.8
38gb|AC124678.7| Mus musculus chromosome 15, clone RP24-107K17, co... 40 2.8
39gb|BT013465.1| Lycopersicon esculentum clone 132124R, mRNA sequence 40 2.8
40emb|CR940311.11| M.truncatula DNA sequence from clone MTH2-17E17... 40 2.8
41gb|AC131742.2| Mus musculus BAC clone RP23-67I3 from chromosome ... 40 2.8
42gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 40 2.8
43gb|AY133585.1| Arabidopsis thaliana At1g79380/T8K14_20 mRNA, com... 40 2.8
44gb|AE005874.1| Caulobacter crescentus CB15 section 200 of 359 of... 40 2.8
45gb|AC025155.20| Homo sapiens 3 BAC RP11-487M24 (Roswell Park Can... 40 2.8
46gb|AF372928.1|AF372928 Arabidopsis thaliana At1g79380/T8K14_20 m... 40 2.8
47emb|BX814966.1|CNS0ADYM Arabidopsis thaliana Full-length cDNA Co... 40 2.8
48emb|BX814990.1|CNS0ABCS Arabidopsis thaliana Full-length cDNA Co... 40 2.8
49gb|AE010301.1| Leptospira interrogans serovar Lai str. 56601 chr... 40 2.8
50dbj|AK065423.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
51emb|BX571837.10| Zebrafish DNA sequence from clone CH211-261O1 i... 40 2.8
52gb|AY105322.1| Zea mays PCO117029 mRNA sequence 40 2.8
53gb|AE016824.1| Leptospira interrogans serovar Copenhageni str. F... 40 2.8
54dbj|AK115025.1| Ciona intestinalis cDNA, clone:cieg027k09, full ... 40 2.8 
>dbj|AK104337.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-D06, full
            insert sequence
          Length = 2349

 Score =  186 bits (94), Expect = 2e-44
 Identities = 178/206 (86%)
 Strand = Plus / Plus

                                                                        
Query: 12   gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71
            |||||||||||||| ||||||||| ||||||| ||||| ||||| ||||| ||||| |||
Sbjct: 939  gatggaccatgggacatgatgcatcagtttgatgacaatatacctgctcgctcatttgac 998

                                                                        
Query: 72   aatttccagtttgtgaattttactgaaattatgtcaaagagcatagcagctgatagaaaa 131
            |||||||||||||||||||| || || || ||||||||||||||||||||||| || || 
Sbjct: 999  aatttccagtttgtgaatttcacggacatcatgtcaaagagcatagcagctgacaggaag 1058

                                                                        
Query: 132  gaggctgaatttgcgttgtcagcattgatggaaattcctacgcagtacaaagcaacactt 191
            ||||| ||||||||  | || || ||||||||||| || || || ||||| |||||||||
Sbjct: 1059 gaggcagaatttgcactatccgccttgatggaaatcccaacacaatacaaggcaacactt 1118

                                      
Query: 192  gatctccaactccttggtcgtcgcca 217
            ||||||||||| || || ||||||||
Sbjct: 1119 gatctccaacttctaggccgtcgcca 1144
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>dbj|AK100593.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106M02, full
            insert sequence
          Length = 2095

 Score =  186 bits (94), Expect = 2e-44
 Identities = 178/206 (86%)
 Strand = Plus / Plus

                                                                        
Query: 12   gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71
            |||||||||||||| ||||||||| ||||||| ||||| ||||| ||||| ||||| |||
Sbjct: 1237 gatggaccatgggacatgatgcatcagtttgatgacaatatacctgctcgctcatttgac 1296

                                                                        
Query: 72   aatttccagtttgtgaattttactgaaattatgtcaaagagcatagcagctgatagaaaa 131
            |||||||||||||||||||| || || || ||||||||||||||||||||||| || || 
Sbjct: 1297 aatttccagtttgtgaatttcacggacatcatgtcaaagagcatagcagctgacaggaag 1356

                                                                        
Query: 132  gaggctgaatttgcgttgtcagcattgatggaaattcctacgcagtacaaagcaacactt 191
            ||||| ||||||||  | || || ||||||||||| || || || ||||| |||||||||
Sbjct: 1357 gaggcagaatttgcactatccgccttgatggaaatcccaacacaatacaaggcaacactt 1416

                                      
Query: 192  gatctccaactccttggtcgtcgcca 217
            ||||||||||| || || ||||||||
Sbjct: 1417 gatctccaacttctaggccgtcgcca 1442
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>dbj|AK099238.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112G09, full
            insert sequence
          Length = 1790

 Score =  186 bits (94), Expect = 2e-44
 Identities = 178/206 (86%)
 Strand = Plus / Plus

                                                                        
Query: 12   gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71
            |||||||||||||| ||||||||| ||||||| ||||| ||||| ||||| ||||| |||
Sbjct: 901  gatggaccatgggacatgatgcatcagtttgatgacaatatacctgctcgctcatttgac 960

                                                                        
Query: 72   aatttccagtttgtgaattttactgaaattatgtcaaagagcatagcagctgatagaaaa 131
            |||||||||||||||||||| || || || ||||||||||||||||||||||| || || 
Sbjct: 961  aatttccagtttgtgaatttcacggacatcatgtcaaagagcatagcagctgacaggaag 1020

                                                                        
Query: 132  gaggctgaatttgcgttgtcagcattgatggaaattcctacgcagtacaaagcaacactt 191
            ||||| ||||||||  | || || ||||||||||| || || || ||||| |||||||||
Sbjct: 1021 gaggcagaatttgcactatccgccttgatggaaatcccaacacaatacaaggcaacactt 1080

                                      
Query: 192  gatctccaactccttggtcgtcgcca 217
            ||||||||||| || || ||||||||
Sbjct: 1081 gatctccaacttctaggccgtcgcca 1106
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>dbj|AK067750.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013115P09, full
            insert sequence
          Length = 1990

 Score =  186 bits (94), Expect = 2e-44
 Identities = 178/206 (86%)
 Strand = Plus / Plus

                                                                        
Query: 12   gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71
            |||||||||||||| ||||||||| ||||||| ||||| ||||| ||||| ||||| |||
Sbjct: 1133 gatggaccatgggacatgatgcatcagtttgatgacaatatacctgctcgctcatttgac 1192

                                                                        
Query: 72   aatttccagtttgtgaattttactgaaattatgtcaaagagcatagcagctgatagaaaa 131
            |||||||||||||||||||| || || || ||||||||||||||||||||||| || || 
Sbjct: 1193 aatttccagtttgtgaatttcacggacatcatgtcaaagagcatagcagctgacaggaag 1252

                                                                        
Query: 132  gaggctgaatttgcgttgtcagcattgatggaaattcctacgcagtacaaagcaacactt 191
            ||||| ||||||||  | || || ||||||||||| || || || ||||| |||||||||
Sbjct: 1253 gaggcagaatttgcactatccgccttgatggaaatcccaacacaatacaaggcaacactt 1312

                                      
Query: 192  gatctccaactccttggtcgtcgcca 217
            ||||||||||| || || ||||||||
Sbjct: 1313 gatctccaacttctaggccgtcgcca 1338
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  105 bits (53), Expect = 6e-20
 Identities = 107/125 (85%)
 Strand = Plus / Minus

                                                                            
Query: 78       cagtttgtgaattttactgaaattatgtcaaagagcatagcagctgatagaaaagaggct 137
                |||||||||||||| || || || ||||||||||||||||||||||| || || ||||| 
Sbjct: 23847248 cagtttgtgaatttcacggacatcatgtcaaagagcatagcagctgacaggaaggaggca 23847189

                                                                            
Query: 138      gaatttgcgttgtcagcattgatggaaattcctacgcagtacaaagcaacacttgatctc 197
                ||||||||  | || || ||||||||||| || || || ||||| |||||||||||||||
Sbjct: 23847188 gaatttgcactatccgccttgatggaaatcccaacacaatacaaggcaacacttgatctc 23847129

                     
Query: 198      caact 202
                |||||
Sbjct: 23847128 caact 23847124



 Score = 81.8 bits (41), Expect = 8e-13
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                            
Query: 12       gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71
                |||||||||||||| ||||||||| ||||||| ||||| ||||| ||||| ||||| |||
Sbjct: 23847407 gatggaccatgggacatgatgcatcagtttgatgacaatatacctgctcgctcatttgac 23847348

                         
Query: 72       aatttccag 80
                |||||||||
Sbjct: 23847347 aatttccag 23847339
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>dbj|AP004279.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0556B08
          Length = 136775

 Score =  105 bits (53), Expect = 6e-20
 Identities = 107/125 (85%)
 Strand = Plus / Minus

                                                                         
Query: 78    cagtttgtgaattttactgaaattatgtcaaagagcatagcagctgatagaaaagaggct 137
             |||||||||||||| || || || ||||||||||||||||||||||| || || ||||| 
Sbjct: 86913 cagtttgtgaatttcacggacatcatgtcaaagagcatagcagctgacaggaaggaggca 86854

                                                                         
Query: 138   gaatttgcgttgtcagcattgatggaaattcctacgcagtacaaagcaacacttgatctc 197
             ||||||||  | || || ||||||||||| || || || ||||| |||||||||||||||
Sbjct: 86853 gaatttgcactatccgccttgatggaaatcccaacacaatacaaggcaacacttgatctc 86794

                  
Query: 198   caact 202
             |||||
Sbjct: 86793 caact 86789



 Score = 81.8 bits (41), Expect = 8e-13
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                         
Query: 12    gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71
             |||||||||||||| ||||||||| ||||||| ||||| ||||| ||||| ||||| |||
Sbjct: 87072 gatggaccatgggacatgatgcatcagtttgatgacaatatacctgctcgctcatttgac 87013

                      
Query: 72    aatttccag 80
             |||||||||
Sbjct: 87012 aatttccag 87004
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>dbj|AK071030.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075N19, full
            insert sequence
          Length = 2114

 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 85/100 (85%)
 Strand = Plus / Plus

                                                                        
Query: 12   gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71
            ||||| ||||||||||||||| |  | ||||||||||||||||| ||| |||| || |||
Sbjct: 1298 gatggtccatgggatatgatgaaggaatttgacgacaacatacctgctaggtcttttgac 1357

                                                    
Query: 72   aatttccagtttgtgaattttactgaaattatgtcaaaga 111
            |||||||||||||| || || |||  ||| ||||||||||
Sbjct: 1358 aatttccagtttgtcaacttcacttcaataatgtcaaaga 1397
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>emb|BX824117.1|CNS0A5LE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH23ZF02 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1736

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 85/102 (83%)
 Strand = Plus / Plus

                                                                        
Query: 10   gggatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcg 69
            |||||||||||||||| ||||||||  | ||||| || |||||||| || ||  | ||||
Sbjct: 1089 gggatggaccatgggacatgatgcaggaatttgatgataacatacctgcccgagctttcg 1148

                                                      
Query: 70   acaatttccagtttgtgaattttactgaaattatgtcaaaga 111
            | || |||||||||||||| ||||| || || ||||||||||
Sbjct: 1149 ataacttccagtttgtgaactttacagagatcatgtcaaaga 1190
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                            
Query: 12       gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71
                ||||| ||||||||||||||| |  | ||||||||||||||||| ||| |||| || |||
Sbjct: 11046414 gatggtccatgggatatgatgaaggaatttgacgacaacatacctgctaggtcttttgac 11046355

                         
Query: 72       aatttccag 80
                |||||||||
Sbjct: 11046354 aatttccag 11046346
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                            
Query: 12       gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71
                ||||| ||||||||||||||| |  | ||||||||||||||||| ||| |||| || |||
Sbjct: 11046112 gatggtccatgggatatgatgaaggaatttgacgacaacatacctgctaggtcttttgac 11046053

                         
Query: 72       aatttccag 80
                |||||||||
Sbjct: 11046052 aatttccag 11046044
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>emb|AL831796.5|CNS08CA9 Oryza sativa chromosome 12, . BAC OSJNBa0012G19 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 157771

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                          
Query: 12     gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71
              ||||| ||||||||||||||| |  | ||||||||||||||||| ||| |||| || |||
Sbjct: 139762 gatggtccatgggatatgatgaaggaatttgacgacaacatacctgctaggtcttttgac 139821

                       
Query: 72     aatttccag 80
              |||||||||
Sbjct: 139822 aatttccag 139830
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>emb|AL844875.4|CNS08CAY Oryza sativa chromosome 12, . BAC OSJNBb0032I14 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 134082

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                         
Query: 12    gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71
             ||||| ||||||||||||||| |  | ||||||||||||||||| ||| |||| || |||
Sbjct: 59161 gatggtccatgggatatgatgaaggaatttgacgacaacatacctgctaggtcttttgac 59220

                      
Query: 72    aatttccag 80
             |||||||||
Sbjct: 59221 aatttccag 59229
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>ref|NM_179526.2| Arabidopsis thaliana unknown protein AT1G67800 transcript variant
            AT1G67800.2 mRNA, complete cds
          Length = 1704

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                        
Query: 37   agtttgacgacaacataccggctcggtcattcgacaatttccagtttgtgaattttactg 96
            ||||||| |||||||| || |||||  | || ||||||||||||||||||||||| || |
Sbjct: 984  agtttgatgacaacatccccgctcgtgcctttgacaatttccagtttgtgaatttcacgg 1043

                           
Query: 97   aaattatgtcaaaga 111
            | || ||||||||||
Sbjct: 1044 atataatgtcaaaga 1058
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>ref|NM_105448.3| Arabidopsis thaliana unknown protein AT1G67800 transcript variant
            AT1G67800.1 mRNA, complete cds
          Length = 1854

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                        
Query: 37   agtttgacgacaacataccggctcggtcattcgacaatttccagtttgtgaattttactg 96
            ||||||| |||||||| || |||||  | || ||||||||||||||||||||||| || |
Sbjct: 1122 agtttgatgacaacatccccgctcgtgcctttgacaatttccagtttgtgaatttcacgg 1181

                           
Query: 97   aaattatgtcaaaga 111
            | || ||||||||||
Sbjct: 1182 atataatgtcaaaga 1196
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>ref|NM_202371.2| Arabidopsis thaliana unknown protein AT1G67800 transcript variant
           AT1G67800.3 mRNA, complete cds
          Length = 1642

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                       
Query: 37  agtttgacgacaacataccggctcggtcattcgacaatttccagtttgtgaattttactg 96
           ||||||| |||||||| || |||||  | || ||||||||||||||||||||||| || |
Sbjct: 909 agtttgatgacaacatccccgctcgtgcctttgacaatttccagtttgtgaatttcacgg 968

                          
Query: 97  aaattatgtcaaaga 111
           | || ||||||||||
Sbjct: 969 atataatgtcaaaga 983
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>emb|BX816009.1|CNS0ADET Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH22ZE08 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1645

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                       
Query: 69   gacaatttccagtttgtgaattttactgaaattatgtcaaaga 111
            |||||||||||||||||||||||||| || || ||||||||||
Sbjct: 1017 gacaatttccagtttgtgaattttacggatataatgtcaaaga 1059
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>emb|BX816005.1|CNS0ADDB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH22ZC07 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1578

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                       
Query: 37  agtttgacgacaacataccggctcggtcattcgacaatttccagtttgtgaattttactg 96
           ||||||| |||||||| || |||||  | || ||||||||||||||||||||||| || |
Sbjct: 894 agtttgatgacaacatccccgctcgtgcctttgacaatttccagtttgtgaatttcacgg 953

                          
Query: 97  aaattatgtcaaaga 111
           | || ||||||||||
Sbjct: 954 atataatgtcaaaga 968
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>emb|BX813899.1|CNS0ADN6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB46ZB04 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1543

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                       
Query: 37  agtttgacgacaacataccggctcggtcattcgacaatttccagtttgtgaattttactg 96
           ||||||| |||||||| || |||||  | || ||||||||||||||||||||||| || |
Sbjct: 872 agtttgatgacaacatccccgctcgtgcctttgacaatttccagtttgtgaatttcacgg 931

                          
Query: 97  aaattatgtcaaaga 111
           | || ||||||||||
Sbjct: 932 atataatgtcaaaga 946
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>emb|BX816031.1|CNS0AD8P Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH23ZH08 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1655

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                        
Query: 37   agtttgacgacaacataccggctcggtcattcgacaatttccagtttgtgaattttactg 96
            ||||||| |||||||| || |||||  | || ||||||||||||||||||||||| || |
Sbjct: 975  agtttgatgacaacatccccgctcgtgcctttgacaatttccagtttgtgaatttcacgg 1034

                           
Query: 97   aaattatgtcaaaga 111
            | || ||||||||||
Sbjct: 1035 atataatgtcaaaga 1049
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>gb|AY087355.1| Arabidopsis thaliana clone 34552 mRNA, complete sequence
          Length = 1839

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                        
Query: 37   agtttgacgacaacataccggctcggtcattcgacaatttccagtttgtgaattttactg 96
            ||||||| |||||||| || |||||  | || ||||||||||||||||||||||| || |
Sbjct: 1122 agtttgatgacaacatccccgctcgtgcctttgacaatttccagtttgtgaatttcacgg 1181

                           
Query: 97   aaattatgtcaaaga 111
            | || ||||||||||
Sbjct: 1182 atataatgtcaaaga 1196
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>ref|NM_111031.3| Arabidopsis thaliana unknown protein AT3G01650 mRNA, complete cds
          Length = 1785

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 84/102 (82%)
 Strand = Plus / Plus

                                                                        
Query: 10   gggatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcg 69
            |||||||||||||||| ||||||||  | ||||| || |||||||| || ||  | ||||
Sbjct: 1089 gggatggaccatgggacatgatgcaggaatttgatgataacatacctgcccgagctttcg 1148

                                                      
Query: 70   acaatttccagtttgtgaattttactgaaattatgtcaaaga 111
            | || |||||||||||||| || || || || ||||||||||
Sbjct: 1149 ataacttccagtttgtgaacttcacagagatcatgtcaaaga 1190
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>gb|AY110072.1| Zea mays CL26556_1 mRNA sequence
          Length = 1213

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                       
Query: 12  gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71
           ||||| ||||||||||||||| |  | ||||| ||||| ||||| ||| |||| || |||
Sbjct: 803 gatggtccatgggatatgatgaaggaatttgatgacaatataccagctaggtcttttgac 744

                         
Query: 72  aatttccagtttgt 85
           ||||||||||||||
Sbjct: 743 aatttccagtttgt 730
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>emb|BX815128.1|CNS0ACTW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS36ZC03 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1562

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 69  gacaatttccagtttgtgaattttactgaaattatgtcaaaga 111
           ||||||||||||||||||||||| || || || ||||||||||
Sbjct: 895 gacaatttccagtttgtgaatttcacggatataatgtcaaaga 937
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>emb|BX815118.1|CNS0ACTL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS35ZA06 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1758

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                        
Query: 37   agtttgacgacaacataccggctcggtcattcgacaatttccagtttgtgaattttactg 96
            ||||||| |||||||| || |||||  | ||  |||||||||||||||||||||| || |
Sbjct: 1026 agtttgatgacaacatccccgctcgtgccttttacaatttccagtttgtgaatttcacgg 1085

                           
Query: 97   aaattatgtcaaaga 111
            | || ||||||||||
Sbjct: 1086 atataatgtcaaaga 1100
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>gb|AC149129.3| Medicago truncatula chromosome 7 BAC clone mth2-139m18, complete
             sequence
          Length = 106423

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 79    agtttgtgaattttactgaaattatgtcaaag 110
             ||||||||||||| || |||||||||||||||
Sbjct: 98146 agtttgtgaatttcacggaaattatgtcaaag 98115
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>gb|AC009325.8|ATAC009325 Arabidopsis thaliana chromosome III BAC F4P13 genomic sequence,
             complete sequence
          Length = 105543

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                           
Query: 10    gggatggaccatgggatatgatgcataagtttgacgacaacatacc 55
             |||||||||||||||| ||||||||  | ||||| || ||||||||
Sbjct: 66269 gggatggaccatgggacatgatgcaggaatttgatgataacatacc 66314
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>gb|AC096374.7| Rattus norvegicus  BAC CH230-17K7 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 239221

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 145    cgttgtcagcattgatggaaat 166
              ||||||||||||||||||||||
Sbjct: 168842 cgttgtcagcattgatggaaat 168821
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>ref|XM_463590.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1488

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                       
Query: 12  gatggaccatgggatatgatgcataagtttgacgacaacataccggctcggtcattcgac 71
           ||||| || ||||| |||||| |  |||||||||||||||| ||  ||||  | || |||
Sbjct: 895 gatggcccttgggacatgatgaaagagtttgacgacaacattccttctcgtgcttttgac 954

                                
Query: 72  aatttccagtttgtgaatttt 92
           ||||| || ||||||||||||
Sbjct: 955 aattttcaatttgtgaatttt 975
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>gb|AC115789.9| Mus musculus chromosome 18, clone RP23-398N2, complete sequence
          Length = 206108

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 161    ggaaattcctacgcagtacaa 181
              |||||||||||||||||||||
Sbjct: 188028 ggaaattcctacgcagtacaa 188048
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>gb|AC116489.6| Mus musculus chromosome 18, clone RP24-137L16, complete sequence
          Length = 198242

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 161    ggaaattcctacgcagtacaa 181
              |||||||||||||||||||||
Sbjct: 177157 ggaaattcctacgcagtacaa 177137
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>gb|AC109253.9| Mus musculus, clone RP23-351D8, complete sequence
          Length = 254578

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 81     tttgtgaattttactgaaatt 101
              |||||||||||||||||||||
Sbjct: 251725 tttgtgaattttactgaaatt 251745
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>emb|AL356495.15| Human DNA sequence from clone RP11-206L1 on chromosome 13 Contains the 5'
              end of the TRPC4 gene for transient receptor potential
              cation channel, subfamily C, member 4, a heat shock 60kD
              protein 1 (chaperonin) (HSPD1) pseudogene and a CpG island,
              complete sequence
          Length = 173774

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 87     aattttactgaaattatgtca 107
              |||||||||||||||||||||
Sbjct: 148309 aattttactgaaattatgtca 148329
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>gb|AC154567.3| Mus musculus BAC clone RP23-245F1 from chromosome 14, complete sequence
          Length = 155103

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 81     tttgtgaattttactgaaatt 101
              |||||||||||||||||||||
Sbjct: 102346 tttgtgaattttactgaaatt 102326
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>ref|NM_106586.3| Arabidopsis thaliana ubiquitin-protein ligase/ zinc ion binding
            AT1G79380 mRNA, complete cds
          Length = 2139

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 65   attcgacaatttccagtttgtgaattttactgaaattatg 104
            ||||||||| || |||||||||||||| || || ||||||
Sbjct: 1125 attcgacaactttcagtttgtgaatttcacagagattatg 1164
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>ref|NM_189355.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1209

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 69  gacaatttccagtttgtgaattttactgaaattatgtcaa 108
           |||||||| ||||||||||| || || || ||||||||||
Sbjct: 739 gacaattttcagtttgtgaacttcacagagattatgtcaa 778
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>gb|BT018541.1| Zea mays clone EL01N0437A03.d mRNA sequence
          Length = 1100

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 69  gacaatttccagtttgtgaattttactgaaattatgtcaa 108
           |||||||| ||||||||||| || ||||  ||||||||||
Sbjct: 395 gacaattttcagtttgtgaacttcactggtattatgtcaa 434
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>gb|AC161480.9| Mus musculus chromosome 15, clone RP23-404I10, complete sequence
          Length = 187202

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 107   aaagagcatagcagctgatagaaa 130
             ||||||||||||| ||||||||||
Sbjct: 28012 aaagagcatagcatctgatagaaa 28035
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>gb|AC124678.7| Mus musculus chromosome 15, clone RP24-107K17, complete sequence
          Length = 137248

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 107   aaagagcatagcagctgatagaaa 130
             ||||||||||||| ||||||||||
Sbjct: 64248 aaagagcatagcatctgatagaaa 64271
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>gb|BT013465.1| Lycopersicon esculentum clone 132124R, mRNA sequence
          Length = 1928

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                        
Query: 141  tttgcgttgtcagcattgatggaaattcctacgcagtacaaagc 184
            |||||| | ||||||||||||||||| ||| | || ||||||||
Sbjct: 1132 tttgcgctttcagcattgatggaaatcccttcacaatacaaagc 1175
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>emb|CR940311.11| M.truncatula DNA sequence from clone MTH2-17E17 on chromosome 3,
             complete sequence
          Length = 122868

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   cagcattgatggaaattcct 170
             ||||||||||||||||||||
Sbjct: 16530 cagcattgatggaaattcct 16511
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>gb|AC131742.2| Mus musculus BAC clone RP23-67I3 from chromosome 1, complete sequence
          Length = 196557

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    tcattcgacaatttccagtt 82
             ||||||||||||||||||||
Sbjct: 82767 tcattcgacaatttccagtt 82786
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>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 52      taccggctcggtcattcgac 71
               ||||||||||||||||||||
Sbjct: 1273236 taccggctcggtcattcgac 1273217
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>gb|AY133585.1| Arabidopsis thaliana At1g79380/T8K14_20 mRNA, complete cds
          Length = 1206

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 65  attcgacaatttccagtttgtgaattttactgaaattatg 104
           ||||||||| || |||||||||||||| || || ||||||
Sbjct: 804 attcgacaactttcagtttgtgaatttcacagagattatg 843
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>gb|AE005874.1| Caulobacter crescentus CB15 section 200 of 359 of the complete genome
          Length = 11292

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 57   gctcggtcattcgacaatttccag 80
            ||||||||||||||| ||||||||
Sbjct: 1087 gctcggtcattcgacgatttccag 1110
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>gb|AC025155.20| Homo sapiens 3 BAC RP11-487M24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 40307

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    tttccagtttgtgaatttta 93
             ||||||||||||||||||||
Sbjct: 36375 tttccagtttgtgaatttta 36356
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>gb|AF372928.1|AF372928 Arabidopsis thaliana At1g79380/T8K14_20 mRNA, complete cds
          Length = 1788

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 65   attcgacaatttccagtttgtgaattttactgaaattatg 104
            ||||||||| || |||||||||||||| || || ||||||
Sbjct: 1125 attcgacaactttcagtttgtgaatttcacagagattatg 1164
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>emb|BX814966.1|CNS0ADYM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS20ZE05 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1580

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 65  attcgacaatttccagtttgtgaattttactgaaattatg 104
           ||||||||| || |||||||||||||| || || ||||||
Sbjct: 885 attcgacaactttcagtttgtgaatttcacagagattatg 924
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>emb|BX814990.1|CNS0ABCS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS22ZE02 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1466

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 65  attcgacaatttccagtttgtgaattttactgaaattatg 104
           ||||||||| || |||||||||||||| || || ||||||
Sbjct: 846 attcgacaactttcagtttgtgaatttcacagagattatg 885
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>gb|AE010301.1| Leptospira interrogans serovar Lai str. 56601 chromosome II, complete
             sequence
          Length = 358943

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    tttccagtttgtgaatttta 93
             ||||||||||||||||||||
Sbjct: 26073 tttccagtttgtgaatttta 26092
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>dbj|AK065423.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013020F11, full
            insert sequence
          Length = 2065

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 69   gacaatttccagtttgtgaattttactgaaattatgtcaa 108
            |||||||| ||||||||||| || || || ||||||||||
Sbjct: 1009 gacaattttcagtttgtgaacttcacagagattatgtcaa 1048
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>emb|BX571837.10| Zebrafish DNA sequence from clone CH211-261O1 in linkage group 19,
              complete sequence
          Length = 190521

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     ttactgaaattatgtcaaag 110
              ||||||||||||||||||||
Sbjct: 108879 ttactgaaattatgtcaaag 108898
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>gb|AY105322.1| Zea mays PCO117029 mRNA sequence
          Length = 1865

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 69   gacaatttccagtttgtgaattttactgaaattatgtcaa 108
            |||||||| ||||||||||| || ||||  ||||||||||
Sbjct: 1095 gacaattttcagtttgtgaacttcactggtattatgtcaa 1134
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>gb|AE016824.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130,
             chromosome II, complete sequence
          Length = 350181

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    tttccagtttgtgaatttta 93
             ||||||||||||||||||||
Sbjct: 24604 tttccagtttgtgaatttta 24623
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>dbj|AK115025.1| Ciona intestinalis cDNA, clone:cieg027k09, full insert sequence
          Length = 1731

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 12  gatggaccatgggatatgatgcataagtttgacgac 47
           ||||||||||||||||  |||||  |||||||||||
Sbjct: 867 gatggaccatgggataccatgcaccagtttgacgac 902


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,849,111
Number of Sequences: 3902068
Number of extensions: 1849111
Number of successful extensions: 131430
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 131176
Number of HSP's gapped (non-prelim): 254
length of query: 217
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 195
effective length of database: 17,147,199,772
effective search space: 3343703955540
effective search space used: 3343703955540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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