Clone Name | basd2d23 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | AREG_HUMAN (P15514) Amphiregulin precursor (AR) (Colorectum cell... | 31 | 2.1 | 2 | MST2_DROHY (Q08696) Axoneme-associated protein mst101(2) | 30 | 4.6 | 3 | HD2C_ARATH (Q9LZR5) Histone deacetylase 2c (HD-tuins protein 3) | 30 | 4.6 | 4 | AREG_RAT (P24338) Amphiregulin precursor (AR) (Schwannoma-derive... | 29 | 7.8 | 5 | ZN706_MOUSE (Q9D115) Zinc finger protein 706 | 29 | 7.8 | 6 | ZN706_HUMAN (Q9Y5V0) Zinc finger protein 706 | 29 | 7.8 |
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>AREG_HUMAN (P15514) Amphiregulin precursor (AR) (Colorectum cell-derived| growth factor) (CRDGF) Length = 252 Score = 30.8 bits (68), Expect = 2.1 Identities = 20/57 (35%), Positives = 26/57 (45%) Frame = +2 Query: 11 NAQKSKMARERNLEKLKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 181 N +S+ ++ K KGGK + N+K N C Q F C E K EH EA Sbjct: 113 NKTESENTSDKPKRKKKGGKNGKNRRNRKKKN-PCNAEFQNF-CIHGECKYIEHLEA 167
>MST2_DROHY (Q08696) Axoneme-associated protein mst101(2)| Length = 1391 Score = 29.6 bits (65), Expect = 4.6 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 6/78 (7%) Frame = +2 Query: 14 AQKSKMARERNLEKLKGGKGSQ------LEANKKAMNIQCKICMQTFICTTSEAKCKEHA 175 A+K K A E+N K K GKG + ++ + A +C + ++ KC+E A Sbjct: 945 AKKEKKAGEKNKLKKKAGKGKKKCKKLGKKSKRAAEKKKCAEAAKKEKEAATKKKCEERA 1004 Query: 176 EAKHPKSDLVQCFPHLKQ 229 + + ++ QC K+ Sbjct: 1005 KKQKEAAEKKQCEERAKK 1022
>HD2C_ARATH (Q9LZR5) Histone deacetylase 2c (HD-tuins protein 3)| Length = 294 Score = 29.6 bits (65), Expect = 4.6 Identities = 19/55 (34%), Positives = 25/55 (45%) Frame = +2 Query: 23 SKMARERNLEKLKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEAKH 187 SK A + + G Q + K A CK C +TF TSE + H +AKH Sbjct: 239 SKQAGKNSGGGSTGETSKQQQTPKSAGAFGCKSCTRTF---TSEMGLQSHTKAKH 290
>AREG_RAT (P24338) Amphiregulin precursor (AR) (Schwannoma-derived growth| factor) (SDGF) Length = 243 Score = 28.9 bits (63), Expect = 7.8 Identities = 17/56 (30%), Positives = 25/56 (44%) Frame = +2 Query: 11 NAQKSKMARERNLEKLKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAE 178 N + + + E+ K KGGKG + N+K C Q F C E + E+ E Sbjct: 103 NKTEGEKSSEKPKRKKKGGKGGKGRRNRKKKKNPCAAKFQNF-CIHGECRYIENLE 157
>ZN706_MOUSE (Q9D115) Zinc finger protein 706| Length = 76 Score = 28.9 bits (63), Expect = 7.8 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Frame = +2 Query: 17 QKSKMARERNLEKLKGGKGSQ----LEANKKAMNIQCKICMQTFICTTSEAKCKEHAEAK 184 Q+ ++++N +K G K Q A K A+ C +C K+H E+K Sbjct: 5 QQKIQSQQKNAKKQAGQKKKQGHDQKAAAKAALIYTCTVCRTQM---PDPKTFKQHFESK 61 Query: 185 HPKSDL 202 HPK+ L Sbjct: 62 HPKTPL 67
>ZN706_HUMAN (Q9Y5V0) Zinc finger protein 706| Length = 76 Score = 28.9 bits (63), Expect = 7.8 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Frame = +2 Query: 17 QKSKMARERNLEKLKGGKGSQ----LEANKKAMNIQCKICMQTFICTTSEAKCKEHAEAK 184 Q+ ++++N +K G K Q A K A+ C +C K+H E+K Sbjct: 5 QQKIQSQQKNAKKQAGQKKKQGHDQKAAAKAALIYTCTVCRTQM---PDPKTFKQHFESK 61 Query: 185 HPKSDL 202 HPK+ L Sbjct: 62 HPKTPL 67 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,652,793 Number of Sequences: 219361 Number of extensions: 1010480 Number of successful extensions: 3046 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2955 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3045 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)